RNA–Protein interactions for RNA: ENST00000544967.5

USP28-213, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 3,498 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-213ENST00000544967 C10orf62Q5T681 223 aaPredicted RBP5.68□□□□□ -1.5
USP28-213ENST00000544967 CPLX4Q7Z7G2 160 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 RALYLQ86SE5 291 aaKnown RBP5.68□□□□□ -1.5
USP28-213ENST00000544967 ALDH16A1Q8IZ83 802 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 LRRC43Q8N309 656 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 KIAA1958Q8N8K9 716 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 NKX2-3Q8TAU0 364 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 AZIN2Q96A70 460 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 CAPZA3Q96KX2 299 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 NOX5Q96PH1 765 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 NAP1L4Q99733 375 aaKnown RBP5.68□□□□□ -1.5
USP28-213ENST00000544967 IER2Q9BTL4 223 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 TIPINQ9BVW5 301 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 LRRC2Q9BYS8 371 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 RNF41Q9H4P4 317 aaPredicted RBP5.68□□□□□ -1.5
USP28-213ENST00000544967 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.68□□□□□ -1.5
USP28-213ENST00000544967 EXOC1Q9NV70 894 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 MTMR4Q9NYA4 1195 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 AIPL1Q9NZN9 384 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 SAMD15Q9P1V8 674 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 AGTPBP1Q9UPW5 1226 aa5.68□□□□□ -1.5
USP28-213ENST00000544967 ALDH1A1P00352 501 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 RPSAP08865 295 aaKnown RBP5.67□□□□□ -1.5
USP28-213ENST00000544967 PARP1P09874 1014 aaKnown RBP5.67□□□□□ -1.5
USP28-213ENST00000544967 GNAT1P11488 350 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 BACE1P56817 501 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 NCALDP61601 193 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 AMPD3Q01432 767 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 SREBF2Q12772 1141 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 TOMM20Q15388 145 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 QPCTQ16769 361 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 SPRED3Q2MJR0 410 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 PABPC1LQ4VXU2 614 aaKnown RBP5.67□□□□□ -1.5
USP28-213ENST00000544967 TNFAIP8L3Q5GJ75 292 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 WASHC2DQ5SRD0 308 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 PHLDB3Q6NSJ2 640 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP5.67□□□□□ -1.5
USP28-213ENST00000544967 STKLD1Q8NE28 680 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 ACTRT1Q8TDG2 376 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 CPLX3Q8WVH0 158 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 TEKT4Q8WW24 435 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 TAF4BQ92750 862 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 GRAMD1AQ96CP6 724 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 THOC1Q96FV9 657 aaKnown RBP5.67□□□□□ -1.5
USP28-213ENST00000544967 CAPNS2Q96L46 248 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 INPP4AQ96PE3 977 aaPredicted RBP5.67□□□□□ -1.5
USP28-213ENST00000544967 PTPN18Q99952 460 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 DUSP9Q99956 384 aaKnown RBP5.67□□□□□ -1.5
USP28-213ENST00000544967 TXLNGYQ9BZA5 131 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 LACRTQ9GZZ8 138 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 VCX3BQ9H321 246 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 CUEDC2Q9H467 287 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 KANSL2Q9H9L4 492 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 VCX3AQ9NNX9 186 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 AVENQ9NQS1 362 aaPredicted RBP5.67□□□□□ -1.5
USP28-213ENST00000544967 FAM114A2Q9NRY5 505 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 MCM9Q9NXL9 1143 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 ATXN10Q9UBB4 475 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 PCDHA13Q9Y5I0 950 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 RNF225M0QZC1 329 aaPredicted RBP5.67□□□□□ -1.5
USP28-213ENST00000544967 DEXIO95424 95 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 GJB6O95452 261 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 CCDC166P0CW27 439 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 BCRP11274 1271 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 CETPP11597 493 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 ECHS1P30084 290 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 HSD17B3P37058 310 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 PDE6CP51160 858 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 RBM5P52756 815 aaKnown RBP eCLIP5.67□□□□□ -1.5
USP28-213ENST00000544967 OAZ1P54368 228 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 DEUP1Q05D60 604 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 SSRP1Q08945 709 aaKnown RBP5.67□□□□□ -1.5
USP28-213ENST00000544967 SNAPC2Q13487 334 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 DEFB115Q30KQ5 88 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 SH2D4BQ5SQS7 431 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 ODR4Q5SWX8 454 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 APOA5Q6Q788 366 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 DLK2Q6UY11 383 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 IFNL1Q8IU54 200 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 ADSSL1Q8N142 457 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 ZNF280CQ8ND82 737 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 OXER1Q8TDS5 423 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 HDAC7Q8WUI4 952 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 CASKIN2Q8WXE0 1202 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 BRI3BPQ8WY22 251 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 INPP5DQ92835 1189 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 OPTNQ96CV9 577 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 CLMNQ96JQ2 1002 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 WRNIP1Q96S55 665 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 CENPOQ9BU64 300 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 TLR10Q9BXR5 811 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 TRIM7Q9C029 511 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 PPANQ9NQ55 473 aaKnown RBP5.67□□□□□ -1.5
USP28-213ENST00000544967 EMILIN3Q9NT22 766 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 IL1RAPL1Q9NZN1 696 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 PDP2Q9P2J9 529 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 TRIM10Q9UDY6 481 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 TTC7AQ9ULT0 858 aaPredicted RBP5.67□□□□□ -1.5
USP28-213ENST00000544967 FRMPD4Q14CM0 1322 aa5.67□□□□□ -1.5
USP28-213ENST00000544967 TRIM64CA6NLI5 447 aa5.67□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 70.3 ms