RNA–Protein interactions for RNA: ENST00000374426.6

CXCL12-202, Transcript of C-X-C motif chemokine ligand 12, humanhuman

TSL 1 (best) BASIC

Gene CXCL12, Length 470 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CXCL12-202ENST00000374426 UBXN11Q5T124 520 aa15.44■□□□□ 0.06
CXCL12-202ENST00000374426 KRT25Q7Z3Z0 450 aa15.44■□□□□ 0.06
CXCL12-202ENST00000374426 MRPL10Q7Z7H8 261 aaKnown RBP15.44■□□□□ 0.06
CXCL12-202ENST00000374426 PRPF31Q8WWY3 499 aaKnown RBP15.44■□□□□ 0.06
CXCL12-202ENST00000374426 SLC7A3Q8WY07 619 aa15.44■□□□□ 0.06
CXCL12-202ENST00000374426 TMEM143Q96AN5 459 aa15.44■□□□□ 0.06
CXCL12-202ENST00000374426 PGBD4Q96DM1 585 aa15.44■□□□□ 0.06
CXCL12-202ENST00000374426 DHX33Q9H6R0 707 aaKnown RBP15.44■□□□□ 0.06
CXCL12-202ENST00000374426 KCNJ14Q9UNX9 436 aa15.44■□□□□ 0.06
CXCL12-202ENST00000374426 CYP46A1Q9Y6A2 500 aa15.44■□□□□ 0.06
CXCL12-202ENST00000374426 LILRB3O75022 631 aa15.43■□□□□ 0.06
CXCL12-202ENST00000374426 CNPP09543 421 aaKnown RBP15.43■□□□□ 0.06
CXCL12-202ENST00000374426 SRGAP2CP0DJJ0 459 aa15.43■□□□□ 0.06
CXCL12-202ENST00000374426 CLCN4P51793 760 aa15.43■□□□□ 0.06
CXCL12-202ENST00000374426 STK3Q13188 491 aa15.43■□□□□ 0.06
CXCL12-202ENST00000374426 SRGAP1Q7Z6B7 1085 aa15.43■□□□□ 0.06
CXCL12-202ENST00000374426 GPR149Q86SP6 731 aa15.43■□□□□ 0.06
CXCL12-202ENST00000374426 PPFIBP1Q86W92 1011 aa15.43■□□□□ 0.06
CXCL12-202ENST00000374426 PLCD3Q8N3E9 789 aa15.43■□□□□ 0.06
CXCL12-202ENST00000374426 URGCPQ8TCY9 931 aa15.43■□□□□ 0.06
CXCL12-202ENST00000374426 PSPC1Q8WXF1 523 aaKnown RBP15.43■□□□□ 0.06
CXCL12-202ENST00000374426 CEP170P1Q96L14 293 aa15.43■□□□□ 0.06
CXCL12-202ENST00000374426 FAM20AQ96MK3 541 aa15.43■□□□□ 0.06
CXCL12-202ENST00000374426 KLHL5Q96PQ7 755 aa15.43■□□□□ 0.06
CXCL12-202ENST00000374426 SFXN1Q9H9B4 322 aa15.43■□□□□ 0.06
CXCL12-202ENST00000374426 RSAD1Q9HA92 442 aa15.43■□□□□ 0.06
CXCL12-202ENST00000374426 SSBP05455 408 aaKnown RBP eCLIP15.42■□□□□ 0.06
CXCL12-202ENST00000374426 P4HBP07237 508 aaKnown RBP15.42■□□□□ 0.06
CXCL12-202ENST00000374426 LAMTOR4Q0VGL1 99 aa15.42■□□□□ 0.06
CXCL12-202ENST00000374426 PPP4R3AQ6IN85 833 aa15.42■□□□□ 0.06
CXCL12-202ENST00000374426 CPLX2Q6PUV4 134 aaKnown RBP15.42■□□□□ 0.06
CXCL12-202ENST00000374426 HAS1Q92839 578 aa15.42■□□□□ 0.06
CXCL12-202ENST00000374426 PHF20Q9BVI0 1012 aa15.42■□□□□ 0.06
CXCL12-202ENST00000374426 SLKQ9H2G2 1235 aaPredicted RBP15.42■□□□□ 0.06
CXCL12-202ENST00000374426 BMP2KQ9NSY1 1161 aaPredicted RBP15.42■□□□□ 0.06
CXCL12-202ENST00000374426 STK39Q9UEW8 545 aa15.42■□□□□ 0.06
CXCL12-202ENST00000374426 PPME1Q9Y570 386 aa15.42■□□□□ 0.06
CXCL12-202ENST00000374426 DENND4AQ7Z401 1863 aa15.42■□□□□ 0.06
CXCL12-202ENST00000374426 CNTNAP2Q9UHC6 1331 aa15.42■□□□□ 0.06
CXCL12-202ENST00000374426 PROB1E7EW31 1015 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 NRP1O14786 923 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 EPB41L2O43491 1005 aaKnown RBP15.41■□□□□ 0.06
CXCL12-202ENST00000374426 DKC1O60832 514 aaKnown RBP eCLIP15.41■□□□□ 0.06
CXCL12-202ENST00000374426 POMCP01189 267 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 ALDH2P05091 517 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 GCFC2P16383 781 aaKnown RBP15.41■□□□□ 0.06
CXCL12-202ENST00000374426 KLRC2P26717 231 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 RFC5P40937 340 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 ASTLQ6HA08 431 aaPredicted RBP15.41■□□□□ 0.06
CXCL12-202ENST00000374426 CCDC149Q6ZUS6 474 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 NEK8Q86SG6 692 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 C4orf19Q8IY42 314 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 EXOC8Q8IYI6 725 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 LXNQ9BS40 222 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 TMEM175Q9BSA9 504 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 EMILIN2Q9BXX0 1053 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 TM6SF1Q9BZW5 370 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 RGL1Q9NZL6 768 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 KANSL3Q9P2N6 904 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 FAN1Q9Y2M0 1017 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 PLXNA3P51805 1871 aa15.41■□□□□ 0.06
CXCL12-202ENST00000374426 CCDC194A0A1B0GVG4 234 aa15.4■□□□□ 0.06
CXCL12-202ENST00000374426 ZBTB39O15060 712 aa15.4■□□□□ 0.06
CXCL12-202ENST00000374426 NCLP19338 710 aaKnown RBP15.4■□□□□ 0.06
CXCL12-202ENST00000374426 YWHABP31946 246 aaKnown RBP15.4■□□□□ 0.06
CXCL12-202ENST00000374426 SPIRE1Q08AE8 756 aa15.4■□□□□ 0.06
CXCL12-202ENST00000374426 EMC2Q15006 297 aa15.4■□□□□ 0.06
CXCL12-202ENST00000374426 EPHA7Q15375 998 aa15.4■□□□□ 0.06
CXCL12-202ENST00000374426 OTOP3Q7RTS5 596 aa15.4■□□□□ 0.06
CXCL12-202ENST00000374426 FERMT3Q86UX7 667 aa15.4■□□□□ 0.06
CXCL12-202ENST00000374426 RNF149Q8NC42 400 aa15.4■□□□□ 0.06
CXCL12-202ENST00000374426 SMG8Q8ND04 991 aaKnown RBP15.4■□□□□ 0.06
CXCL12-202ENST00000374426 OXER1Q8TDS5 423 aa15.4■□□□□ 0.06
CXCL12-202ENST00000374426 ACSF2Q96CM8 615 aaPredicted RBP15.4■□□□□ 0.06
CXCL12-202ENST00000374426 FAM193BQ96PV7 902 aaPredicted RBP15.4■□□□□ 0.06
CXCL12-202ENST00000374426 MRPL17Q9NRX2 175 aaKnown RBP15.4■□□□□ 0.06
CXCL12-202ENST00000374426 GJB4Q9NTQ9 266 aa15.4■□□□□ 0.06
CXCL12-202ENST00000374426 MARCH5Q9NX47 278 aa15.4■□□□□ 0.06
CXCL12-202ENST00000374426 ZNF292O60281 2723 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 SPDYE4A6NLX3 237 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 C2CD2LO14523 706 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 TBX3O15119 743 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 GAS2O43903 313 aaKnown RBP15.39■□□□□ 0.05
CXCL12-202ENST00000374426 CCNT1O60563 726 aaKnown RBP15.39■□□□□ 0.05
CXCL12-202ENST00000374426 DTNBO60941 627 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 SOD2P04179 222 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 CLCN5P51795 746 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 SCRN1Q12765 414 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 CWF19L1Q69YN2 538 aaKnown RBP15.39■□□□□ 0.05
CXCL12-202ENST00000374426 C15orf39Q6ZRI6 1047 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 PIK3AP1Q6ZUJ8 805 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 ASCL5Q7RTU5 278 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 TAS1R1Q7RTX1 841 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 POTEDQ86YR6 584 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 COLGALT2Q8IYK4 626 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 TCP11Q8WWU5 503 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 DYDC2Q96IM9 177 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 EIF2AQ9BY44 585 aaKnown RBP15.39■□□□□ 0.05
CXCL12-202ENST00000374426 RNF39Q9H2S5 420 aa15.39■□□□□ 0.05
CXCL12-202ENST00000374426 MFSD1Q9H3U5 465 aa15.39■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms