RNA–Protein interactions for RNA: ENST00000372405.1

PTPRF-202, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 1,962 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-202ENST00000372405 GJB7Q6PEY0 223 aa15.02■□□□□ -0
PTPRF-202ENST00000372405 CCDC170Q8IYT3 715 aa15.02■□□□□ -0
PTPRF-202ENST00000372405 MSL3Q8N5Y2 521 aaKnown RBP15.02■□□□□ -0
PTPRF-202ENST00000372405 LMO3Q8TAP4 145 aa15.02■□□□□ -0
PTPRF-202ENST00000372405 DEPTORQ8TB45 409 aa15.02■□□□□ -0
PTPRF-202ENST00000372405 POMGNT1Q8WZA1 660 aa15.02■□□□□ -0
PTPRF-202ENST00000372405 SYN2Q92777 582 aaPredicted RBP15.02■□□□□ -0
PTPRF-202ENST00000372405 PRIMPOLQ96LW4 560 aa15.02■□□□□ -0
PTPRF-202ENST00000372405 SUGCTQ9HAC7 445 aa15.02■□□□□ -0
PTPRF-202ENST00000372405 KCNG1Q9UIX4 513 aa15.02■□□□□ -0
PTPRF-202ENST00000372405 ABT1Q9ULW3 272 aaKnown RBP15.02■□□□□ -0
PTPRF-202ENST00000372405 TFR2Q9UP52 801 aa15.02■□□□□ -0
PTPRF-202ENST00000372405 STYXL1Q9Y6J8 313 aa15.02■□□□□ -0
PTPRF-202ENST00000372405 CENPFP49454 3210 aa15.02■□□□□ -0
PTPRF-202ENST00000372405 TTLL13PA6NNM8 815 aa15.02□□□□□ -0.01
PTPRF-202ENST00000372405 EIF3CLB5ME19 914 aaKnown RBP15.02□□□□□ -0.01
PTPRF-202ENST00000372405 ADCY3O60266 1144 aa15.02□□□□□ -0.01
PTPRF-202ENST00000372405 LRRN2O75325 713 aa15.02□□□□□ -0.01
PTPRF-202ENST00000372405 PIGRP01833 764 aa15.02□□□□□ -0.01
PTPRF-202ENST00000372405 GJB1P08034 283 aa15.02□□□□□ -0.01
PTPRF-202ENST00000372405 HOXD8P13378 290 aaPredicted RBP15.02□□□□□ -0.01
PTPRF-202ENST00000372405 KRT13P13646 458 aa15.02□□□□□ -0.01
PTPRF-202ENST00000372405 GARTP22102 1010 aa15.02□□□□□ -0.01
PTPRF-202ENST00000372405 EIF4A3P38919 411 aaKnown RBP15.02□□□□□ -0.01
PTPRF-202ENST00000372405 CCL14Q16627 93 aa15.02□□□□□ -0.01
PTPRF-202ENST00000372405 ASTE1Q2TB18 679 aaPredicted RBP15.02□□□□□ -0.01
PTPRF-202ENST00000372405 IER5Q5VY09 327 aa15.02□□□□□ -0.01
PTPRF-202ENST00000372405 BICD1Q96G01 975 aa15.02□□□□□ -0.01
PTPRF-202ENST00000372405 WDR24Q96S15 920 aa15.02□□□□□ -0.01
PTPRF-202ENST00000372405 EIF3CQ99613 913 aaKnown RBP15.02□□□□□ -0.01
PTPRF-202ENST00000372405 GPBP1L1Q9HC44 474 aaPredicted RBP15.02□□□□□ -0.01
PTPRF-202ENST00000372405 FBXL5Q9UKA1 691 aa15.02□□□□□ -0.01
PTPRF-202ENST00000372405 GJD2Q9UKL4 321 aa15.02□□□□□ -0.01
PTPRF-202ENST00000372405 K7ERI5 159 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 RIOK3O14730 519 aaKnown RBP15.01□□□□□ -0.01
PTPRF-202ENST00000372405 C22orf31O95567 290 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 IGHA2P01877 340 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 ABCD1P33897 745 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 JAM2P57087 298 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 MYL7Q01449 175 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 CYP27A1Q02318 531 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 LAMTOR4Q0VGL1 99 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 SFMBT2Q5VUG0 894 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 CDCA2Q69YH5 1023 aaPredicted RBP15.01□□□□□ -0.01
PTPRF-202ENST00000372405 IQSEC1Q6DN90 963 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 CCDC102AQ96A19 550 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 ZBTB45Q96K62 511 aaPredicted RBP15.01□□□□□ -0.01
PTPRF-202ENST00000372405 MFSD14AQ96MC6 490 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 TMEM134Q9H6X4 195 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 AIPL1Q9NZN9 384 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 DNAI1Q9UI46 699 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 PAXBP1Q9Y5B6 917 aa15.01□□□□□ -0.01
PTPRF-202ENST00000372405 RCCD1A6NED2 376 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 GAS2O43903 313 aaKnown RBP15□□□□□ -0.01
PTPRF-202ENST00000372405 MMP3P08254 477 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 INSRRP14616 1297 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 SCP2P22307 547 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 CYLC1P35663 651 aaPredicted RBP15□□□□□ -0.01
PTPRF-202ENST00000372405 TM4SF4P48230 202 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 GCLMP48507 274 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 LIG4P49917 911 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 CLCN3P51790 818 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 TERF1P54274 439 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 MAPK8IP2Q13387 824 aaPredicted RBP15□□□□□ -0.01
PTPRF-202ENST00000372405 RAPGEF1Q13905 1077 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 IQCEQ6IPM2 695 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 KIF18AQ8NI77 898 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 PARD3BQ8TEW8 1205 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 PSPC1Q8WXF1 523 aaKnown RBP15□□□□□ -0.01
PTPRF-202ENST00000372405 CCDC42Q96M95 316 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 TARS2Q9BW92 718 aaKnown RBP15□□□□□ -0.01
PTPRF-202ENST00000372405 CCDC113Q9H0I3 377 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 NUCKS1Q9H1E3 243 aaKnown RBP15□□□□□ -0.01
PTPRF-202ENST00000372405 ZFYVE28Q9HCC9 887 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 SLC5A4Q9NY91 659 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 TRIM10Q9UDY6 481 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 PHLPP2Q6ZVD8 1323 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 PPFIA4O75335 1185 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 TUBB4AP04350 444 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 ZNF865P0CJ78 1059 aaPredicted RBP15□□□□□ -0.01
PTPRF-202ENST00000372405 CYP2C19P33261 490 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 KIF11P52732 1056 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 CYP24A1Q07973 514 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 SREBF2Q12772 1141 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 STRN3Q13033 797 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 IRF2BP2Q7Z5L9 587 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 GPD1LQ8N335 351 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 OR6J1Q8NGC5 347 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 TCP11Q8WWU5 503 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 POP1Q99575 1024 aaKnown RBP15□□□□□ -0.01
PTPRF-202ENST00000372405 TMEM117Q9H0C3 514 aa15□□□□□ -0.01
PTPRF-202ENST00000372405 INTS2Q9H0H0 1204 aaKnown RBP15□□□□□ -0.01
PTPRF-202ENST00000372405 LRRIQ3A6PVS8 624 aaPredicted RBP14.99□□□□□ -0.01
PTPRF-202ENST00000372405 MSCO60682 206 aa14.99□□□□□ -0.01
PTPRF-202ENST00000372405 LCA5LO95447 670 aa14.99□□□□□ -0.01
PTPRF-202ENST00000372405 SRGAP2CP0DJJ0 459 aa14.99□□□□□ -0.01
PTPRF-202ENST00000372405 CYP2B6P20813 491 aa14.99□□□□□ -0.01
PTPRF-202ENST00000372405 WNT7BP56706 349 aa14.99□□□□□ -0.01
PTPRF-202ENST00000372405 GNG11P61952 73 aa14.99□□□□□ -0.01
PTPRF-202ENST00000372405 IGBP1P78318 339 aa14.99□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 86 ms