RNA–Protein interactions for RNA: snR56

snR56, Transcript of C/D box small nucleolar RNA (snoRNA), yeast

Gene snR56, Length 88 nt, Biotype snoRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
snR56	snR56	TRM7	P38238	310 aa	Known RBP	0.54	□□□□□ -2.32
snR56	snR56	NUP57	P48837	541 aa		0.54	□□□□□ -2.32
snR56	snR56	COS6	P53344	381 aa		0.54	□□□□□ -2.32
snR56	snR56	BIO4	P53630	237 aa		0.54	□□□□□ -2.32
snR56	snR56	ALG9	P53868	555 aa	Known RBP	0.54	□□□□□ -2.32
snR56	snR56	SLM2	P53955	656 aa		0.54	□□□□□ -2.32
snR56	snR56	AIM33	Q04516	312 aa		0.54	□□□□□ -2.32
snR56	snR56	YDL121C	Q07541	149 aa		0.54	□□□□□ -2.32
snR56	snR56	EMC6	Q12431	108 aa		0.54	□□□□□ -2.32
snR56	snR56	PDX1	P16451	410 aa		0.53	□□□□□ -2.32
snR56	snR56	SMP3	Q04174	516 aa		0.53	□□□□□ -2.32
snR56	snR56	GRH1	Q04410	372 aa	Known RBP	0.53	□□□□□ -2.32
snR56	snR56	FSH3	Q99369	266 aa		0.53	□□□□□ -2.32
snR56	snR56	BUD2	P33314	1104 aa		0.52	□□□□□ -2.33
snR56	snR56	KTI12	P34253	313 aa	Known RBP	0.52	□□□□□ -2.33
snR56	snR56	MLH1	P38920	769 aa		0.52	□□□□□ -2.33
snR56	snR56	MPS2	P53159	387 aa		0.52	□□□□□ -2.33
snR56	snR56	RMT2	Q03305	412 aa		0.52	□□□□□ -2.33
snR56	snR56	ARF2	P19146	181 aa	Known RBP	0.51	□□□□□ -2.33
snR56	snR56	RPC53	P25441	422 aa		0.51	□□□□□ -2.33
snR56	snR56	CIK1	Q01649	594 aa		0.51	□□□□□ -2.33
snR56	snR56	CTS2	Q06350	511 aa		0.51	□□□□□ -2.33
snR56	snR56	VPH2	P32341	215 aa		0.5	□□□□□ -2.33
snR56	snR56	SUR1	P33300	382 aa		0.5	□□□□□ -2.33
snR56	snR56	MMS21	P38632	267 aa		0.5	□□□□□ -2.33
snR56	snR56	YHR045W	P38775	560 aa		0.5	□□□□□ -2.33
snR56	snR56	FYV8	P46949	817 aa	Known RBP	0.5	□□□□□ -2.33
snR56	snR56	YGR266W	P53326	701 aa		0.5	□□□□□ -2.33
snR56	snR56	APC5	Q08683	685 aa		0.5	□□□□□ -2.33
snR56	snR56	GPM3	Q12326	303 aa		0.5	□□□□□ -2.33
snR56	snR56	AGC1	Q12482	902 aa		0.5	□□□□□ -2.33
snR56	snR56	PSO2	P30620	661 aa		0.49	□□□□□ -2.33
snR56	snR56	MND1	P53102	219 aa		0.49	□□□□□ -2.33
snR56	snR56	YNR066C	P53752	436 aa		0.49	□□□□□ -2.33
snR56	snR56	PRM4	Q12498	284 aa		0.49	□□□□□ -2.33
snR56	snR56	GRR1	P24814	1151 aa		0.48	□□□□□ -2.33
snR56	snR56	ERG9	P29704	444 aa		0.48	□□□□□ -2.33
snR56	snR56	COY1	P34237	679 aa		0.48	□□□□□ -2.33
snR56	snR56	AIM29	P36154	155 aa		0.48	□□□□□ -2.33
snR56	snR56	SYS1	P41544	203 aa		0.48	□□□□□ -2.33
snR56	snR56	MRX9	Q07349	420 aa	Known RBP	0.48	□□□□□ -2.33
snR56	snR56	PEX27	Q08580	376 aa		0.48	□□□□□ -2.33
snR56	snR56	YPL245W	Q12179	454 aa	Known RBP	0.48	□□□□□ -2.33
snR56	snR56	AIM45	Q12480	344 aa	Known RBP	0.48	□□□□□ -2.33
snR56	snR56	BOL1	Q3E793	110 aa		0.48	□□□□□ -2.33
snR56	snR56	TDH1	P00360	332 aa	Known RBP	0.47	□□□□□ -2.33
snR56	snR56	REP1	P03871	373 aa		0.47	□□□□□ -2.33
snR56	snR56	CKI1	P20485	582 aa		0.47	□□□□□ -2.33
snR56	snR56	YOR062C	P36025	268 aa		0.47	□□□□□ -2.33
snR56	snR56	AYR1	P40471	297 aa		0.47	□□□□□ -2.33
snR56	snR56	RSM27	P53305	110 aa		0.47	□□□□□ -2.33
snR56	snR56	YAL063C-A	Q3E791	96 aa		0.47	□□□□□ -2.33
snR56	snR56	RSC1	P53236	928 aa		0.46	□□□□□ -2.34
snR56	snR56	UTR1	P21373	530 aa		0.45	□□□□□ -2.34
snR56	snR56	SNL1	P40548	159 aa		0.45	□□□□□ -2.34
snR56	snR56	MRPL49	P40858	161 aa	Predicted RBP	0.45	□□□□□ -2.34
snR56	snR56	NAT4	Q04751	285 aa		0.45	□□□□□ -2.34
snR56	snR56	DTD1	Q07648	150 aa	Known RBP	0.45	□□□□□ -2.34
snR56	snR56	RAD1	P06777	1100 aa		0.44	□□□□□ -2.34
snR56	snR56	RPL1A	P0CX43	217 aa	Known RBP	0.44	□□□□□ -2.34
snR56	snR56	RPL1B	P0CX44	217 aa	Known RBP	0.44	□□□□□ -2.34
snR56	snR56	SPS100	P13130	326 aa		0.44	□□□□□ -2.34
snR56	snR56	PET8	P38921	284 aa		0.44	□□□□□ -2.34
snR56	snR56	YPL247C	Q12523	523 aa		0.44	□□□□□ -2.34
snR56	snR56	MXR2	P25566	168 aa		0.43	□□□□□ -2.34
snR56	snR56	YCR102C	P25608	368 aa		0.43	□□□□□ -2.34
snR56	snR56	YBL028C	P38202	106 aa		0.43	□□□□□ -2.34
snR56	snR56	HCH1	P53834	153 aa		0.43	□□□□□ -2.34
snR56	snR56	FCF1	Q05498	189 aa	Predicted RBP	0.43	□□□□□ -2.34
snR56	snR56	YOR292C	Q08743	309 aa		0.43	□□□□□ -2.34
snR56	snR56	DSE2	P38844	325 aa		0.42	□□□□□ -2.34
snR56	snR56	UTP25	P40498	721 aa	Known RBP	0.42	□□□□□ -2.34
snR56	snR56	SEC13	Q04491	297 aa	Known RBP	0.42	□□□□□ -2.34
snR56	snR56	ARC18	Q05933	178 aa	Known RBP	0.42	□□□□□ -2.34
snR56	snR56	COG3	P40094	801 aa		0.41	□□□□□ -2.34
snR56	snR56	OST3	P48439	350 aa		0.41	□□□□□ -2.34
snR56	snR56	LIF1	P53150	421 aa		0.41	□□□□□ -2.34
snR56	snR56	INH1	P01097	85 aa		0.4	□□□□□ -2.35
snR56	snR56	IML3	P38265	245 aa		0.4	□□□□□ -2.35
snR56	snR56	YER135C	P40082	130 aa		0.4	□□□□□ -2.35
snR56	snR56	BUD27	P43573	796 aa	Known RBP RIP-Chip data	0.4	□□□□□ -2.35	not detected
snR56	snR56	CAB4	P53332	305 aa		0.4	□□□□□ -2.35
snR56	snR56	YOR268C	Q08734	132 aa		0.4	□□□□□ -2.35
snR56	snR56	RDL2	Q08742	149 aa	Known RBP	0.4	□□□□□ -2.35
snR56	snR56	VIK1	Q12045	647 aa		0.4	□□□□□ -2.35
snR56	snR56	SPE3	Q12074	293 aa	Known RBP	0.4	□□□□□ -2.35
snR56	snR56	SFG1	Q12507	346 aa		0.4	□□□□□ -2.35
snR56	snR56	ATG15	P25641	520 aa		0.39	□□□□□ -2.35
snR56	snR56	SRB7	P47822	140 aa		0.39	□□□□□ -2.35
snR56	snR56	RAD10	P06838	210 aa		0.38	□□□□□ -2.35
snR56	snR56	DCC1	P25559	380 aa		0.38	□□□□□ -2.35
snR56	snR56	CDC13	P32797	924 aa	Known RBP	0.38	□□□□□ -2.35
snR56	snR56	MBA1	P38300	278 aa		0.38	□□□□□ -2.35
snR56	snR56	PES4	P39684	611 aa		0.38	□□□□□ -2.35
snR56	snR56	NUP49	Q02199	472 aa		0.38	□□□□□ -2.35
snR56	snR56	NNT1	Q05874	261 aa		0.38	□□□□□ -2.35
snR56	snR56	CDC7	P06243	507 aa		0.37	□□□□□ -2.35
snR56	snR56	GAL7	P08431	366 aa		0.37	□□□□□ -2.35
snR56	snR56	YOL162W	P0CF19	215 aa		0.37	□□□□□ -2.35
snR56	snR56	YFL064C	P43540	174 aa		0.37	□□□□□ -2.35

Retrieved 100 of 5,963 RNA–protein pairs in 52.9 ms