RNA–Protein interactions for RNA: YKL124W

SSH4, Transcript of Specificity factor required for Rsp5p-dependent ubiquitination, yeast

Gene SSH4, Length 1,740 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SSH4	YKL124W	IST2	P38250	946 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	EGD2	P38879	174 aa	Known RBP	4.05	□□□□□ -1.76
SSH4	YKL124W	SUR2	P38992	349 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	SSO2	P39926	295 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	PIG2	P40187	538 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	CIN1	P40987	1014 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	YGL185C	P53100	379 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	YGR079W	P53249	370 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	TWF1	P53250	332 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	YNL092W	P53934	400 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	SWP1	Q02795	286 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	WTM2	Q12206	467 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	YDL177C	Q12257	170 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	MTR10	Q99189	972 aa		4.05	□□□□□ -1.76
SSH4	YKL124W	ZWF1	P11412	505 aa	Known RBP	4.04	□□□□□ -1.76
SSH4	YKL124W	ERD1	P16151	362 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	YCK1	P23291	538 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	GIT1	P25346	518 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	NFS1	P25374	497 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	MKK1	P32490	508 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	SIP1	P32578	815 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	TSC10	P38342	320 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	QDR2	P40474	542 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	RPE1	P46969	238 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	BNA3	P47039	444 aa	Known RBP	4.04	□□□□□ -1.76
SSH4	YKL124W	TMA22	P47089	198 aa	Predicted RBP	4.04	□□□□□ -1.76
SSH4	YKL124W	SLI1	P53304	468 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	MPA43	P53583	542 aa	Predicted RBP	4.04	□□□□□ -1.76
SSH4	YKL124W	CUZ1	P53899	274 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	NCE101	Q02820	53 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	ATP25	Q03153	612 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	HSP31	Q04432	237 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	SEI1	Q06058	285 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	YOR214C	Q12282	236 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	THP2	O13539	261 aa	Known RBP	4.04	□□□□□ -1.76
SSH4	YKL124W	GPH1	P06738	902 aa	Known RBP	4.04	□□□□□ -1.76
SSH4	YKL124W	RAD7	P06779	565 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	HTS1	P07263	546 aa	Known RBP	4.04	□□□□□ -1.76
SSH4	YKL124W	MSN1	P22148	382 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	ATP7	P30902	174 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	HCS1	P34243	683 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	MAE1	P36013	669 aa	Known RBP	4.04	□□□□□ -1.76
SSH4	YKL124W	SOK1	P40317	901 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	MPH1	P40562	993 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	PPT1	P53043	513 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	RHO5	P53879	331 aa	Known RBP	4.04	□□□□□ -1.76
SSH4	YKL124W	DIA1	P54005	336 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	RAD30	Q04049	632 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	YDL114W	Q07530	308 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	MFG1	Q07684	458 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	MSH5	Q12175	901 aa		4.04	□□□□□ -1.76
SSH4	YKL124W	RPS1B	P23248	255 aa	Known RBP	4.03	□□□□□ -1.76
SSH4	YKL124W	YME2	P32843	850 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	YKR073C	P36153	106 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	RCK1	P38622	512 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	GRE3	P38715	327 aa	Known RBP RIP-Chip data	4.03	□□□□□ -1.76	not detected
SSH4	YKL124W	ANS1	P38832	159 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	CIN4	P39110	191 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	IRC5	P43610	853 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	MNN5	P46982	586 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	PGU1	P47180	361 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	COG2	P53271	262 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	IGO1	P53897	168 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	DYN3	Q04949	312 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	PAL1	Q05518	499 aa	Known RBP	4.03	□□□□□ -1.76
SSH4	YKL124W	CTS2	Q06350	511 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	SDO1	Q07953	250 aa	Known RBP	4.03	□□□□□ -1.76
SSH4	YKL124W	DIA2	Q08496	732 aa	Predicted RBP	4.03	□□□□□ -1.76
SSH4	YKL124W	SNX3	Q08826	162 aa	Known RBP	4.03	□□□□□ -1.76
SSH4	YKL124W	GRE1	Q08969	168 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	RCN2	Q12044	265 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	INP53	Q12271	1107 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	COX17	Q12287	69 aa		4.03	□□□□□ -1.76
SSH4	YKL124W	FLO9	P39712	1322 aa		4.03	□□□□□ -1.77
SSH4	YKL124W	YFR010W-A	P0C5N0	62 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	ARF1	P11076	181 aa	Known RBP	4.02	□□□□□ -1.77
SSH4	YKL124W	GAL3	P13045	520 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	ATS1	P31386	333 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	MRP20	P32387	263 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	MAL32	P38158	584 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	ZTA1	P38230	334 aa	Known RBP	4.02	□□□□□ -1.77
SSH4	YKL124W	MED8	P38304	223 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	TDA11	P38854	504 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	SLZ1	P40167	298 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	MET28	P40573	187 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	CAK1	P43568	368 aa	Predicted RBP	4.02	□□□□□ -1.77
SSH4	YKL124W	COX16	P47081	118 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	NIT3	P49954	291 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	LSG1	P53145	640 aa	Known RBP	4.02	□□□□□ -1.77
SSH4	YKL124W	USE1	P53146	245 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	MAL12	P53341	584 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	YDR249C	Q03787	373 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	NAT4	Q04751	285 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	ARO10	Q06408	635 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	HNT3	Q08702	217 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	RDR1	Q08904	546 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	YPR202W	Q08993	238 aa		4.02	□□□□□ -1.77
SSH4	YKL124W	PRS5	Q12265	496 aa	Known RBP	4.02	□□□□□ -1.77
SSH4	YKL124W	TFB5	Q3E7C1	72 aa	Predicted RBP	4.02	□□□□□ -1.77
SSH4	YKL124W	RPL6B	P05739	176 aa	Known RBP	4.01	□□□□□ -1.77

Retrieved 100 of 5,963 RNA–protein pairs in 63.2 ms