RNA–Protein interactions for RNA: ENST00000597396.5

SHKBP1-214, Transcript of SH3KBP1 binding protein 1, humanhuman

TSL 3

Gene SHKBP1, Length 1,019 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHKBP1-214ENST00000597396 PBX4Q9BYU1 374 aa21.74■■□□□ 1.07
SHKBP1-214ENST00000597396 C2orf40Q9H1Z8 148 aa21.74■■□□□ 1.07
SHKBP1-214ENST00000597396 TSHZ2Q9NRE2 1034 aa21.74■■□□□ 1.07
SHKBP1-214ENST00000597396 CHMP5Q9NZZ3 219 aa21.74■■□□□ 1.07
SHKBP1-214ENST00000597396 PIN4Q9Y237 131 aaKnown RBP21.74■■□□□ 1.07
SHKBP1-214ENST00000597396 PCDHA11Q9Y5I1 949 aa21.74■■□□□ 1.07
SHKBP1-214ENST00000597396 MYO9BQ13459 2157 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 A0A087X0B3 334 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 GJB5O95377 273 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 DNAJB2P25686 324 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 PBX2P40425 430 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 PEX3P56589 373 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 MAPK7Q13164 816 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 DMP1Q13316 513 aaPredicted RBP21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 RESP18Q5W5W9 173 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 SV2BQ7L1I2 683 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 DAW1Q8N136 415 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 TOP1MTQ969P6 601 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 GDPD2Q9HCC8 539 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 CHST12Q9NRB3 414 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 RGS18Q9NS28 235 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 DACT1Q9NYF0 836 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 LRFN2Q9ULH4 789 aa21.73■■□□□ 1.07
SHKBP1-214ENST00000597396 NPHP3-ACAD11A0A0J9YXS1 232 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 CCDC169A6NNP5 214 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 SFI1A8K8P3 1242 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 STAG3L1P0CL83 205 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 SARSP49591 514 aaKnown RBP21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 CACNB1Q02641 598 aaPredicted RBP21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 MBTD1Q05BQ5 628 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 NCBP1Q09161 790 aaKnown RBP21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 PCBP1Q15365 356 aaKnown RBP eCLIP21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 NAALADL2Q58DX5 795 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 ARSHQ5FYA8 562 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 CDCA2Q69YH5 1023 aaPredicted RBP21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 ADALQ6DHV7 355 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 TWF2Q6IBS0 349 aaKnown RBP21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 SLC24A5Q71RS6 500 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 DHX58Q96C10 678 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 CDX2Q99626 313 aaPredicted RBP21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 REEP2Q9BRK0 252 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 SEMA6BQ9H3T3 888 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 C17orf75Q9HAS0 396 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 AGPAT5Q9NUQ2 364 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 RNF216Q9NWF9 866 aaPredicted RBP21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 ODF2LQ9ULJ1 636 aa21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 FNDC1Q4ZHG4 1894 aaPredicted RBP21.72■■□□□ 1.07
SHKBP1-214ENST00000597396 NLRC5Q86WI3 1866 aa21.71■■□□□ 1.07
SHKBP1-214ENST00000597396 FAM13AO94988 1023 aa21.71■■□□□ 1.07
SHKBP1-214ENST00000597396 MYOGP15173 224 aa21.71■■□□□ 1.07
SHKBP1-214ENST00000597396 LIG1P18858 919 aa21.71■■□□□ 1.07
SHKBP1-214ENST00000597396 TPRNQ4KMQ1 711 aa21.71■■□□□ 1.07
SHKBP1-214ENST00000597396 NPAS4Q8IUM7 802 aa21.71■■□□□ 1.07
SHKBP1-214ENST00000597396 IQUBQ8NA54 791 aa21.71■■□□□ 1.07
SHKBP1-214ENST00000597396 TIFAQ96CG3 184 aa21.71■■□□□ 1.07
SHKBP1-214ENST00000597396 RAD9AQ99638 391 aa21.71■■□□□ 1.07
SHKBP1-214ENST00000597396 KIFC3Q9BVG8 833 aa21.71■■□□□ 1.07
SHKBP1-214ENST00000597396 NKX2-4Q9H2Z4 354 aa21.71■■□□□ 1.07
SHKBP1-214ENST00000597396 KMT5AQ9NQR1 393 aa21.71■■□□□ 1.07
SHKBP1-214ENST00000597396 PRMT7Q9NVM4 692 aaPredicted RBP21.71■■□□□ 1.07
SHKBP1-214ENST00000597396 YBX2Q9Y2T7 364 aaKnown RBP21.71■■□□□ 1.07
SHKBP1-214ENST00000597396 C9IYK1 514 aa21.7■■□□□ 1.06
SHKBP1-214ENST00000597396 TBCAO75347 108 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-214ENST00000597396 YME1L1Q96TA2 773 aa21.7■■□□□ 1.06
SHKBP1-214ENST00000597396 PYM1Q9BRP8 204 aaKnown RBP21.7■■□□□ 1.06
SHKBP1-214ENST00000597396 CUEDC2Q9H467 287 aa21.7■■□□□ 1.06
SHKBP1-214ENST00000597396 ZHX3Q9H4I2 956 aa21.7■■□□□ 1.06
SHKBP1-214ENST00000597396 KCNG1Q9UIX4 513 aa21.7■■□□□ 1.06
SHKBP1-214ENST00000597396 INSL6Q9Y581 213 aa21.7■■□□□ 1.06
SHKBP1-214ENST00000597396 PCDHB7Q9Y5E2 793 aa21.7■■□□□ 1.06
SHKBP1-214ENST00000597396 POLR2DO15514 142 aaKnown RBP21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 TSPAN1O60635 241 aa21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 PRKCBP05771 671 aa21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 PLS3P13797 630 aa21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 AXLP30530 894 aa21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 NPTX2P47972 431 aa21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 EFNA5P52803 228 aa21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 SMTNP53814 917 aa21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 GIT2Q14161 759 aa21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 E2F4Q16254 413 aa21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 MAPK6Q16659 721 aa21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 TMEM132AQ24JP5 1023 aa21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 DYMQ7RTS9 669 aa21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 TTYH1Q9H313 450 aaPredicted RBP21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 SLC28A3Q9HAS3 691 aa21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 LARSQ9P2J5 1176 aaKnown RBP21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 ADGRA3Q8IWK6 1321 aa21.69■■□□□ 1.06
SHKBP1-214ENST00000597396 CA3P07451 260 aa21.68■■□□□ 1.06
SHKBP1-214ENST00000597396 CMA1P23946 247 aa21.68■■□□□ 1.06
SHKBP1-214ENST00000597396 NOTUMQ6P988 496 aa21.68■■□□□ 1.06
SHKBP1-214ENST00000597396 ECHDC2Q86YB7 292 aa21.68■■□□□ 1.06
SHKBP1-214ENST00000597396 MYCT1Q8N699 235 aa21.68■■□□□ 1.06
SHKBP1-214ENST00000597396 CPB2Q96IY4 423 aa21.68■■□□□ 1.06
SHKBP1-214ENST00000597396 PRIMPOLQ96LW4 560 aa21.68■■□□□ 1.06
SHKBP1-214ENST00000597396 PARVGQ9HBI0 331 aa21.68■■□□□ 1.06
SHKBP1-214ENST00000597396 TMEM161AQ9NX61 479 aa21.68■■□□□ 1.06
SHKBP1-214ENST00000597396 KCNH3Q9ULD8 1083 aa21.68■■□□□ 1.06
SHKBP1-214ENST00000597396 LAMA2P24043 3122 aaKnown RBP21.67■■□□□ 1.06
SHKBP1-214ENST00000597396 RALGAPA2Q2PPJ7 1873 aa21.67■■□□□ 1.06
SHKBP1-214ENST00000597396 PHLPP2Q6ZVD8 1323 aa21.67■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 35 ms