RNA–Protein interactions for RNA: ENST00000543048.5

TNFRSF1A-214, Transcript of TNF receptor superfamily member 1A, humanhuman

TSL 5

Gene TNFRSF1A, Length 571 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TNFRSF1A-214ENST00000543048 DGAT1O75907 488 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 LINC00271P0C7V0 271 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 SFPQP23246 707 aaKnown RBP eCLIP10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 RPA1P27694 616 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 GATMP50440 423 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 EMP3P54852 163 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 PTGDRQ13258 359 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 MXD4Q14582 209 aaPredicted RBP10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 EMC2Q15006 297 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 PAN2Q504Q3 1202 aaKnown RBP10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 LARP1BQ659C4 914 aaKnown RBP10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 CATSPER4Q7RTX7 472 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 SRGAP1Q7Z6B7 1085 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 FERMT3Q86UX7 667 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 ECHDC2Q86YB7 292 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 PIGOQ8TEQ8 1089 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 SYMPKQ92797 1274 aaKnown RBP10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 NLRP4Q96MN2 994 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 CCDC43Q96MW1 224 aaKnown RBP10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 MTRQ99707 1265 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 C11orf84Q9BUA3 381 aaPredicted RBP10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 LMAN2LQ9H0V9 348 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 IFT122Q9HBG6 1241 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 AAASQ9NRG9 546 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 THEGQ9P2T0 379 aa10.84□□□□□ -0.67
TNFRSF1A-214ENST00000543048 LAD1O00515 517 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 HOXA2O43364 376 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 MED24O75448 989 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 SKIP12755 728 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 HOXB1P14653 301 aaPredicted RBP10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 MUTP22033 750 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 ARL2P36404 184 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 RARRES1P49788 294 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 POU5F1BQ06416 359 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 NBR1Q14596 966 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 AAK1Q2M2I8 961 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 RILPL1Q5EBL4 403 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 TJAP1Q5JTD0 557 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 SPOUT1Q5T280 376 aaKnown RBP10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 P2RX5Q93086 422 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 HLA-CQ95604 372 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 DDX27Q96GQ7 796 aaKnown RBP10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 ASB2Q96Q27 587 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 TRAIPQ9BWF2 469 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 RAB34Q9BZG1 259 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 TMEM117Q9H0C3 514 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 XPNPEP1Q9NQW7 623 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 TYW1Q9NV66 732 aaKnown RBP10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 LRWD1Q9UFC0 647 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 DBR1Q9UK59 544 aaKnown RBP10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 PLAGL2Q9UPG8 496 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 PCDHB6Q9Y5E3 794 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 PCDHB12Q9Y5F1 795 aa10.83□□□□□ -0.68
TNFRSF1A-214ENST00000543048 GRM6O15303 877 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 FGFR1P11362 822 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 CCT6AP40227 531 aaKnown RBP10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 PRPHP41219 470 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 PHKA2P46019 1235 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 PTENP60484 403 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 CUL4AQ13619 759 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 TFDP1Q14186 410 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 TWF2Q6IBS0 349 aaKnown RBP10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 DTHD1Q6ZMT9 781 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 ZNF598Q86UK7 904 aaKnown RBP10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 ABI1Q8IZP0 508 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 KLHL23Q8NBE8 558 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 RNF149Q8NC42 400 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 RNF169Q8NCN4 708 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 SPPL3Q8TCT6 385 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 CASD1Q96PB1 797 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 COL25A1Q9BXS0 654 aaPredicted RBP10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 ALG13Q9NP73 1137 aaKnown RBP10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 TRIP11Q15643 1979 aa10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 TDRD15B5MCY1 1934 aaKnown RBP10.82□□□□□ -0.68
TNFRSF1A-214ENST00000543048 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 ZNF623O75123 536 aa10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 NCBP1Q09161 790 aaKnown RBP10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 PCBP1Q15365 356 aaKnown RBP eCLIP10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 CSPP1Q1MSJ5 1256 aa10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 TIGD5Q53EQ6 642 aa10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 ARSIQ5FYB1 569 aa10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 HAUS3Q68CZ6 603 aa10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 IGSF22Q8N9C0 903 aa10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 MCPH1Q8NEM0 835 aa10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 NSUN3Q9H649 340 aaKnown RBP10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 CWH43Q9H720 699 aa10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 MINDY3Q9H8M7 445 aa10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 RNF19AQ9NV58 838 aa10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 KIAA1024Q9UPX6 916 aa10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 PIN4Q9Y237 131 aaKnown RBP10.81□□□□□ -0.68
TNFRSF1A-214ENST00000543048 TTC28Q96AY4 2481 aa10.8□□□□□ -0.68
TNFRSF1A-214ENST00000543048 ARHGEF35A5YM69 484 aa10.8□□□□□ -0.68
TNFRSF1A-214ENST00000543048 NCK2O43639 380 aa10.8□□□□□ -0.68
TNFRSF1A-214ENST00000543048 ITGB1P05556 798 aa10.8□□□□□ -0.68
TNFRSF1A-214ENST00000543048 BMP1P13497 986 aa10.8□□□□□ -0.68
TNFRSF1A-214ENST00000543048 LAG3P18627 525 aa10.8□□□□□ -0.68
TNFRSF1A-214ENST00000543048 CYP11B2P19099 503 aa10.8□□□□□ -0.68
TNFRSF1A-214ENST00000543048 PDCP20941 246 aa10.8□□□□□ -0.68
TNFRSF1A-214ENST00000543048 GLRA2P23416 452 aa10.8□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 23.9 ms