RNA–Protein interactions for RNA: ENST00000540469.5

SFSWAP-209, Transcript of splicing factor SWAP, humanhuman

TSL 3

Gene SFSWAP, Length 3,536 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-209ENST00000540469 EDRF1Q3B7T1 1238 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 PARP10Q53GL7 1025 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 ARHGEF18Q6ZSZ5 1173 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 SEPT14Q6ZU15 432 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 FRMD5Q7Z6J6 570 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 DLGAP2Q9P1A6 1054 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 CHORDC1Q9UHD1 332 aaPredicted RBP13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 HAO1Q9UJM8 370 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 AJAP1Q9UKB5 411 aaPredicted RBP13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 INTUQ9ULD6 942 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 TNS2Q63HR2 1409 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 MEIS1O00470 390 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 KLC1Q07866 573 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 TBC1D16Q8TBP0 767 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 SH3RF3Q8TEJ3 882 aaPredicted RBP13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 PIGOQ8TEQ8 1089 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 ARHGEF26Q96DR7 871 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 KCNMB3Q9NPA1 279 aa13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 NKX1-2Q9UD57 310 aaPredicted RBP13.81□□□□□ -0.2
SFSWAP-209ENST00000540469 DOCK2Q92608 1830 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 IGSF9BQ9UPX0 1349 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 DDX3YO15523 660 aaKnown RBP13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 TBCAO75347 108 aaKnown RBP13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 TMEM253P0C7T8 217 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 ALDH3A1P30838 453 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 CASP4P49662 377 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 CASP5P51878 434 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 DRAP1Q14919 205 aaPredicted RBP13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 KNOP1Q1ED39 458 aaKnown RBP13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 SFR1Q86XK3 245 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 LNX1Q8TBB1 728 aaPredicted RBP13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 KCTD10Q9H3F6 313 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 CDC42EP4Q9H3Q1 356 aaKnown RBP13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 RNPEPL1Q9HAU8 725 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 METTL14Q9HCE5 456 aaKnown RBP13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 GRHL1Q9NZI5 618 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 DNAJC12Q9UKB3 198 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 ZMYND8Q9ULU4 1186 aaPredicted RBP13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 ALG6Q9Y672 507 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 PFASO15067 1338 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 POTEFA5A3E0 1075 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 USP17L5A8MUK1 530 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 AKAP3O75969 853 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 UNC5CO95185 931 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 BAG3O95817 575 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 POTEIP0CG38 1075 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 TRIP13Q15645 432 aaPredicted RBP13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 GALNTL6Q49A17 601 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 POTEGQ6S5H5 508 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 POTEEQ6S8J3 1075 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 NGLY1Q96IV0 654 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 SLC4A9Q96Q91 983 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 PICK1Q9NRD5 415 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 GOLGB1Q14789 3259 aaKnown RBP13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 SPDYE5A6NIY4 337 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 BHMG1C9JSJ3 638 aaPredicted RBP13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 NR3C1P04150 777 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 HSPA6P17066 643 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 CALB2P22676 271 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 ANXA13P27216 316 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 MARSP56192 900 aaKnown RBP13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 DIXDC1Q155Q3 683 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 CNBD1Q8NA66 436 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 LRRC37BQ96QE4 947 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 TTC7AQ9ULT0 858 aaPredicted RBP13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 MINPP1Q9UNW1 487 aa13.8□□□□□ -0.2
SFSWAP-209ENST00000540469 COL1A1P02452 1464 aaPredicted RBP13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 ECEL1O95672 775 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 LDHBP07195 334 aaKnown RBP13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 FESP07332 822 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 SOX5P35711 763 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 STRN3Q13033 797 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 TRAF1Q13077 416 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 DNAJC9Q8WXX5 260 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 KRT35Q92764 455 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 ROPN1BQ9BZX4 212 aaPredicted RBP13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 ROPN1Q9HAT0 212 aaPredicted RBP13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 CCDC88AQ3V6T2 1871 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 CICQ96RK0 1608 aaPredicted RBP13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 PLCH1Q4KWH8 1693 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 PYGLP06737 847 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 CYP11B2P19099 503 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 STAT3P40763 770 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 MARCKSL1P49006 195 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 IL9RQ01113 521 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 PRELID2Q8N945 189 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 CKAP2Q8WWK9 683 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 USP40Q9NVE5 1235 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 PITPNM2Q9BZ72 1349 aa13.79□□□□□ -0.2
SFSWAP-209ENST00000540469 DRG2P55039 364 aaKnown RBP13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 EPHA7Q15375 998 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 KYNUQ16719 465 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 ANO7Q6IWH7 933 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 FOXR2Q6PJQ5 311 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 LRRC47Q8N1G4 583 aaKnown RBP13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 STK32AQ8WU08 396 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 RPS6KC1Q96S38 1066 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 GJB6O95452 261 aa13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 CTTNQ14247 550 aaKnown RBP13.78□□□□□ -0.2
SFSWAP-209ENST00000540469 ECHDC2Q86YB7 292 aa13.78□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms