RNA–Protein interactions for RNA: ENST00000329231.8

ATPAF1-201, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2 BASIC

Gene ATPAF1, Length 1,241 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-201ENST00000329231 IL17AQ16552 155 aa30.66■■■□□ 2.5
ATPAF1-201ENST00000329231 CSPP1Q1MSJ5 1256 aa30.66■■■□□ 2.5
ATPAF1-201ENST00000329231 MAEAQ7L5Y9 396 aa30.66■■■□□ 2.5
ATPAF1-201ENST00000329231 LRRC43Q8N309 656 aa30.66■■■□□ 2.5
ATPAF1-201ENST00000329231 RSPH1Q8WYR4 309 aa30.66■■■□□ 2.5
ATPAF1-201ENST00000329231 SYMPKQ92797 1274 aaKnown RBP30.66■■■□□ 2.5
ATPAF1-201ENST00000329231 INTS4Q96HW7 963 aaKnown RBP30.66■■■□□ 2.5
ATPAF1-201ENST00000329231 NFKBIZQ9BYH8 718 aa30.66■■■□□ 2.5
ATPAF1-201ENST00000329231 NSUN3Q9H649 340 aaKnown RBP30.66■■■□□ 2.5
ATPAF1-201ENST00000329231 ALG13Q9NP73 1137 aaKnown RBP30.66■■■□□ 2.5
ATPAF1-201ENST00000329231 KIAA1024Q9UPX6 916 aa30.66■■■□□ 2.5
ATPAF1-201ENST00000329231 ZNF623O75123 536 aa30.65■■■□□ 2.5
ATPAF1-201ENST00000329231 ITGB1P05556 798 aa30.65■■■□□ 2.5
ATPAF1-201ENST00000329231 LAG3P18627 525 aa30.65■■■□□ 2.5
ATPAF1-201ENST00000329231 NCBP1Q09161 790 aaKnown RBP30.65■■■□□ 2.5
ATPAF1-201ENST00000329231 ECM1Q16610 540 aa30.65■■■□□ 2.5
ATPAF1-201ENST00000329231 CLLU1OSQ5K130 101 aa30.65■■■□□ 2.5
ATPAF1-201ENST00000329231 CWH43Q9H720 699 aa30.65■■■□□ 2.5
ATPAF1-201ENST00000329231 GPRC5CQ9NQ84 441 aa30.65■■■□□ 2.5
ATPAF1-201ENST00000329231 DDX19AQ9NUU7 478 aaKnown RBP30.65■■■□□ 2.5
ATPAF1-201ENST00000329231 VPS37CA5D8V6 355 aaPredicted RBP30.64■■■□□ 2.5
ATPAF1-201ENST00000329231 INO80B-WBP1J3KQ70 363 aa30.64■■■□□ 2.5
ATPAF1-201ENST00000329231 K7ELQ4 463 aaPredicted RBP30.64■■■□□ 2.5
ATPAF1-201ENST00000329231 CYP11B2P19099 503 aa30.64■■■□□ 2.5
ATPAF1-201ENST00000329231 AXLP30530 894 aa30.64■■■□□ 2.5
ATPAF1-201ENST00000329231 HOXA11P31270 313 aaPredicted RBP30.64■■■□□ 2.5
ATPAF1-201ENST00000329231 ARL6IP4Q66PJ3 421 aaKnown RBP30.64■■■□□ 2.5
ATPAF1-201ENST00000329231 SPPL3Q8TCT6 385 aa30.64■■■□□ 2.5
ATPAF1-201ENST00000329231 HELQQ8TDG4 1101 aa30.64■■■□□ 2.5
ATPAF1-201ENST00000329231 COL25A1Q9BXS0 654 aaPredicted RBP30.64■■■□□ 2.5
ATPAF1-201ENST00000329231 COLGALT1Q8NBJ5 622 aa30.63■■■□□ 2.49
ATPAF1-201ENST00000329231 PGBD4Q96DM1 585 aa30.63■■■□□ 2.49
ATPAF1-201ENST00000329231 MRPL9Q9BYD2 267 aaKnown RBP30.63■■■□□ 2.49
ATPAF1-201ENST00000329231 BHMT2Q9H2M3 363 aa30.63■■■□□ 2.49
ATPAF1-201ENST00000329231 HCSTQ9UBK5 93 aa30.63■■■□□ 2.49
ATPAF1-201ENST00000329231 PCDHB2Q9Y5E7 798 aa30.63■■■□□ 2.49
ATPAF1-201ENST00000329231 PP2D1A8MPX8 630 aa30.62■■■□□ 2.49
ATPAF1-201ENST00000329231 TFF2Q03403 129 aa30.62■■■□□ 2.49
ATPAF1-201ENST00000329231 MBTD1Q05BQ5 628 aa30.62■■■□□ 2.49
ATPAF1-201ENST00000329231 TCEAL5Q5H9L2 206 aa30.62■■■□□ 2.49
ATPAF1-201ENST00000329231 LRRC55Q6ZSA7 311 aa30.62■■■□□ 2.49
ATPAF1-201ENST00000329231 DNM3Q9UQ16 869 aa30.62■■■□□ 2.49
ATPAF1-201ENST00000329231 KIAA1671Q9BY89 1806 aa30.61■■■□□ 2.49
ATPAF1-201ENST00000329231 LRRIQ4A6NIV6 560 aa30.61■■■□□ 2.49
ATPAF1-201ENST00000329231 TSPAN1O60635 241 aa30.61■■■□□ 2.49
ATPAF1-201ENST00000329231 BMP15O95972 392 aa30.61■■■□□ 2.49
ATPAF1-201ENST00000329231 CDC25AP30304 524 aa30.61■■■□□ 2.49
ATPAF1-201ENST00000329231 NOTUMQ6P988 496 aa30.61■■■□□ 2.49
ATPAF1-201ENST00000329231 GLB1LQ6UWU2 654 aa30.61■■■□□ 2.49
ATPAF1-201ENST00000329231 THNSL1Q8IYQ7 743 aa30.61■■■□□ 2.49
ATPAF1-201ENST00000329231 LPPQ93052 612 aa30.61■■■□□ 2.49
ATPAF1-201ENST00000329231 CCDC51Q96ER9 411 aa30.61■■■□□ 2.49
ATPAF1-201ENST00000329231 VWA3AA6NCI4 1184 aa30.6■■■□□ 2.49
ATPAF1-201ENST00000329231 UBE3AQ05086 875 aa30.6■■■□□ 2.49
ATPAF1-201ENST00000329231 POF1BQ8WVV4 589 aa30.6■■■□□ 2.49
ATPAF1-201ENST00000329231 FGF18O76093 207 aa30.59■■■□□ 2.49
ATPAF1-201ENST00000329231 EYA4O95677 639 aa30.59■■■□□ 2.49
ATPAF1-201ENST00000329231 SYT1P21579 422 aa30.59■■■□□ 2.49
ATPAF1-201ENST00000329231 CAMK1Q14012 370 aa30.59■■■□□ 2.49
ATPAF1-201ENST00000329231 LONRF3Q496Y0 759 aa30.59■■■□□ 2.49
ATPAF1-201ENST00000329231 UBXN11Q5T124 520 aa30.59■■■□□ 2.49
ATPAF1-201ENST00000329231 MRPL10Q7Z7H8 261 aaKnown RBP30.59■■■□□ 2.49
ATPAF1-201ENST00000329231 ZBTB8OSQ8IWT0 167 aa30.59■■■□□ 2.49
ATPAF1-201ENST00000329231 CNNM3Q8NE01 707 aa30.59■■■□□ 2.49
ATPAF1-201ENST00000329231 SNX21Q969T3 373 aa30.59■■■□□ 2.49
ATPAF1-201ENST00000329231 ZNF558Q96NG5 402 aa30.59■■■□□ 2.49
ATPAF1-201ENST00000329231 MMTAG2Q9BU76 263 aaKnown RBP30.59■■■□□ 2.49
ATPAF1-201ENST00000329231 UBE2ZQ9H832 354 aaPredicted RBP30.59■■■□□ 2.49
ATPAF1-201ENST00000329231 NCK2O43639 380 aa30.58■■■□□ 2.49
ATPAF1-201ENST00000329231 CSPG5O95196 566 aa30.58■■■□□ 2.49
ATPAF1-201ENST00000329231 DNAJB1P25685 340 aa30.58■■■□□ 2.49
ATPAF1-201ENST00000329231 PPP2R5AQ15172 486 aa30.58■■■□□ 2.49
ATPAF1-201ENST00000329231 AMHR2Q16671 573 aa30.58■■■□□ 2.49
ATPAF1-201ENST00000329231 CDCA2Q69YH5 1023 aaPredicted RBP30.58■■■□□ 2.49
ATPAF1-201ENST00000329231 KCNT2Q6UVM3 1135 aa30.58■■■□□ 2.49
ATPAF1-201ENST00000329231 PPP2R3CQ969Q6 453 aa30.58■■■□□ 2.49
ATPAF1-201ENST00000329231 C2orf40Q9H1Z8 148 aa30.58■■■□□ 2.49
ATPAF1-201ENST00000329231 REV3LO60673 3130 aa30.58■■■□□ 2.49
ATPAF1-201ENST00000329231 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP30.57■■■□□ 2.48
ATPAF1-201ENST00000329231 E9PMD0 336 aa30.57■■■□□ 2.48
ATPAF1-201ENST00000329231 PPM1AP35813 382 aa30.57■■■□□ 2.48
ATPAF1-201ENST00000329231 NOMO2Q5JPE7 1267 aa30.57■■■□□ 2.48
ATPAF1-201ENST00000329231 KCTD17Q8N5Z5 321 aa30.57■■■□□ 2.48
ATPAF1-201ENST00000329231 KIFAP3Q92845 792 aa30.57■■■□□ 2.48
ATPAF1-201ENST00000329231 CPB2Q96IY4 423 aa30.57■■■□□ 2.48
ATPAF1-201ENST00000329231 NT5C3AQ9H0P0 336 aa30.57■■■□□ 2.48
ATPAF1-201ENST00000329231 CSRNP2Q9H175 543 aa30.57■■■□□ 2.48
ATPAF1-201ENST00000329231 CNTNAP2Q9UHC6 1331 aa30.56■■■□□ 2.48
ATPAF1-201ENST00000329231 MEIS3P2A8K0S8 358 aa30.56■■■□□ 2.48
ATPAF1-201ENST00000329231 OFD1O75665 1012 aa30.56■■■□□ 2.48
ATPAF1-201ENST00000329231 ARF4P18085 180 aaPredicted RBP30.56■■■□□ 2.48
ATPAF1-201ENST00000329231 NCLP19338 710 aaKnown RBP30.56■■■□□ 2.48
ATPAF1-201ENST00000329231 NAMPTP43490 491 aa30.56■■■□□ 2.48
ATPAF1-201ENST00000329231 PLCB3Q01970 1234 aa30.56■■■□□ 2.48
ATPAF1-201ENST00000329231 ZRSR1Q15695 479 aaKnown RBP30.56■■■□□ 2.48
ATPAF1-201ENST00000329231 BSNDQ8WZ55 320 aa30.56■■■□□ 2.48
ATPAF1-201ENST00000329231 IFT74Q96LB3 600 aa30.56■■■□□ 2.48
ATPAF1-201ENST00000329231 PRIMPOLQ96LW4 560 aa30.56■■■□□ 2.48
ATPAF1-201ENST00000329231 AK8Q96MA6 479 aa30.56■■■□□ 2.48
ATPAF1-201ENST00000329231 FOXD4L1Q9NU39 408 aa30.56■■■□□ 2.48
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms