RNA–Protein interactions for RNA: YER018C

SPC25, Transcript of Component of the kinetochore-associated Ndc80 complex, yeast

Gene SPC25, Length 666 nt, Biotype protein coding.

RNA		Protein				Prediction (catRAPID)		Interaction (RIP-Chip)
Gene	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	Detected Interaction
SPC25	YER018C	SUI2	P20459	304 aa	Known RBP	13.73	□□□□□ -0.21
SPC25	YER018C	YNL050C	P53952	270 aa		13.73	□□□□□ -0.21
SPC25	YER018C	RTT109	Q07794	436 aa		13.72	□□□□□ -0.21
SPC25	YER018C	NUP145	P49687	1317 aa		13.71	□□□□□ -0.21
SPC25	YER018C	OSM1	P21375	501 aa	Known RBP	13.71	□□□□□ -0.21
SPC25	YER018C	RVB2	Q12464	471 aa	Known RBP	13.71	□□□□□ -0.21
SPC25	YER018C	RPN11	P43588	306 aa	Known RBP	13.7	□□□□□ -0.22
SPC25	YER018C	ZDS1	P50111	915 aa	Known RBP	13.7	□□□□□ -0.22
SPC25	YER018C	YJL181W	P46987	611 aa		13.69	□□□□□ -0.22
SPC25	YER018C	LAM6	Q08001	693 aa		13.69	□□□□□ -0.22
SPC25	YER018C	KCC4	P25389	1037 aa		13.68	□□□□□ -0.22
SPC25	YER018C	HEF3	P53978	1044 aa	Known RBP	13.68	□□□□□ -0.22
SPC25	YER018C	PRP40	P33203	583 aa	Known RBP	13.66	□□□□□ -0.22
SPC25	YER018C	YKR075C	P36155	307 aa		13.66	□□□□□ -0.22
SPC25	YER018C	RRT14	P40470	206 aa		13.66	□□□□□ -0.22
SPC25	YER018C	YBR287W	P38355	427 aa		13.65	□□□□□ -0.22
SPC25	YER018C	MAM1	P40065	302 aa		13.65	□□□□□ -0.22
SPC25	YER018C	UGA3	P26370	528 aa		13.64	□□□□□ -0.23
SPC25	YER018C	GYP7	P48365	746 aa		13.64	□□□□□ -0.23
SPC25	YER018C	YBP2	P53169	641 aa		13.64	□□□□□ -0.23
SPC25	YER018C	NSE3	Q05541	303 aa		13.64	□□□□□ -0.23
SPC25	YER018C	RIM15	P43565	1770 aa		13.63	□□□□□ -0.23
SPC25	YER018C	UBP1	P25037	809 aa		13.63	□□□□□ -0.23
SPC25	YER018C	FUN12	P39730	1002 aa	Known RBP	13.62	□□□□□ -0.23
SPC25	YER018C	ALE1	Q08548	619 aa		13.62	□□□□□ -0.23
SPC25	YER018C	BUD31	P25337	157 aa	Predicted RBP	13.61	□□□□□ -0.23
SPC25	YER018C	BMS1	Q08965	1183 aa	Known RBP	13.61	□□□□□ -0.23
SPC25	YER018C	YRB30	P53107	440 aa	Predicted RBP	13.6	□□□□□ -0.23
SPC25	YER018C	COQ4	O13525	335 aa		13.59	□□□□□ -0.23
SPC25	YER018C	NPR2	P39923	615 aa		13.58	□□□□□ -0.24
SPC25	YER018C	GRX1	P25373	110 aa	Known RBP	13.57	□□□□□ -0.24
SPC25	YER018C	RMT2	Q03305	412 aa		13.57	□□□□□ -0.24
SPC25	YER018C	EDE1	P34216	1381 aa		13.56	□□□□□ -0.24
SPC25	YER018C	SRT1	Q03175	343 aa		13.55	□□□□□ -0.24
SPC25	YER018C	NAB6	Q03735	1134 aa	Known RBP RIP-Chip data	13.55	□□□□□ -0.24	not detected
SPC25	YER018C	RAD4	P14736	754 aa		13.54	□□□□□ -0.24
SPC25	YER018C	TUM1	Q08686	304 aa	Known RBP	13.54	□□□□□ -0.24
SPC25	YER018C	MAK21	Q12176	1025 aa	Known RBP	13.54	□□□□□ -0.24
SPC25	YER018C	MSB4	Q12317	492 aa		13.53	□□□□□ -0.24
SPC25	YER018C	DAL5	P15365	543 aa		13.52	□□□□□ -0.25
SPC25	YER018C	LYS4	P49367	693 aa	Predicted RBP	13.52	□□□□□ -0.25
SPC25	YER018C	NOP53	Q12080	455 aa	Known RBP	13.52	□□□□□ -0.25
SPC25	YER018C	LYS2	P07702	1392 aa		13.51	□□□□□ -0.25
SPC25	YER018C	RAD2	P07276	1031 aa		13.51	□□□□□ -0.25
SPC25	YER018C	PRI1	P10363	409 aa		13.51	□□□□□ -0.25
SPC25	YER018C	YOL057W	Q08225	711 aa		13.49	□□□□□ -0.25
SPC25	YER018C	YIL092W	P40497	633 aa		13.48	□□□□□ -0.25
SPC25	YER018C	ZDS2	P54786	942 aa		13.48	□□□□□ -0.25
SPC25	YER018C	GRE2	Q12068	342 aa	Known RBP	13.48	□□□□□ -0.25
SPC25	YER018C	YFR016C	P43597	1233 aa	Known RBP	13.47	□□□□□ -0.25
SPC25	YER018C	TFA1	P36100	482 aa		13.46	□□□□□ -0.25
SPC25	YER018C	SSP2	Q08646	371 aa		13.46	□□□□□ -0.25
SPC25	YER018C	BUD27	P43573	796 aa	Known RBP RIP-Chip data	13.45	□□□□□ -0.26	not detected
SPC25	YER018C	VPS64	Q03944	604 aa		13.45	□□□□□ -0.26
SPC25	YER018C	MDG1	P53885	366 aa		13.44	□□□□□ -0.26
SPC25	YER018C	TEA1	P47988	759 aa		13.43	□□□□□ -0.26
SPC25	YER018C	NOP8	Q08287	484 aa	Predicted RBP	13.43	□□□□□ -0.26
SPC25	YER018C	MRP7	P12687	371 aa		13.42	□□□□□ -0.26
SPC25	YER018C	YPP1	P46951	817 aa		13.42	□□□□□ -0.26
SPC25	YER018C	ALD2	P47771	506 aa		13.42	□□□□□ -0.26
SPC25	YER018C	BUG1	Q12191	341 aa		13.42	□□□□□ -0.26
SPC25	YER018C	PHM7	Q12252	991 aa		13.42	□□□□□ -0.26
SPC25	YER018C	APL2	P36000	726 aa	Predicted RBP	13.41	□□□□□ -0.26
SPC25	YER018C	YBL086C	P38177	466 aa		13.41	□□□□□ -0.26
SPC25	YER018C	SER1	P33330	395 aa	Known RBP	13.4	□□□□□ -0.26
SPC25	YER018C	DNM1	P54861	757 aa		13.4	□□□□□ -0.26
SPC25	YER018C	FPR3	P38911	411 aa	Known RBP	13.39	□□□□□ -0.27
SPC25	YER018C	CTH1	P47976	325 aa		13.39	□□□□□ -0.27
SPC25	YER018C	YGL082W	P53155	381 aa		13.39	□□□□□ -0.27
SPC25	YER018C	YGR122W	P53272	402 aa		13.39	□□□□□ -0.27
SPC25	YER018C	CSI1	Q04368	295 aa		13.39	□□□□□ -0.27
SPC25	YER018C	BDF1	P35817	686 aa		13.38	□□□□□ -0.27
SPC25	YER018C	CST6	P40535	587 aa		13.38	□□□□□ -0.27
SPC25	YER018C	YDR306C	Q06640	478 aa		13.38	□□□□□ -0.27
SPC25	YER018C	NYV1	Q12255	253 aa		13.38	□□□□□ -0.27
SPC25	YER018C	TRP5	P00931	707 aa	Known RBP	13.37	□□□□□ -0.27
SPC25	YER018C	RAD24	P32641	659 aa		13.37	□□□□□ -0.27
SPC25	YER018C	NUP133	P36161	1157 aa		13.37	□□□□□ -0.27
SPC25	YER018C	UGA2	P38067	497 aa		13.37	□□□□□ -0.27
SPC25	YER018C	RPG1	P38249	964 aa	Known RBP	13.37	□□□□□ -0.27
SPC25	YER018C	SSA2	P10592	639 aa	Known RBP	13.36	□□□□□ -0.27
SPC25	YER018C	GTT3	P39996	337 aa		13.36	□□□□□ -0.27
SPC25	YER018C	YPR204W	Q08995	1032 aa		13.36	□□□□□ -0.27
SPC25	YER018C	ARG8	P18544	423 aa		13.35	□□□□□ -0.27
SPC25	YER018C	POL32	P47110	350 aa		13.35	□□□□□ -0.27
SPC25	YER018C	ALD3	P54114	506 aa		13.35	□□□□□ -0.27
SPC25	YER018C	SWI1	P09547	1314 aa		13.35	□□□□□ -0.27
SPC25	YER018C	PKH1	Q03407	766 aa		13.34	□□□□□ -0.27
SPC25	YER018C	PUF6	Q04373	656 aa	Known RBP	13.34	□□□□□ -0.27
SPC25	YER018C	SWC3	P31376	625 aa		13.33	□□□□□ -0.28
SPC25	YER018C	UTP22	P53254	1237 aa	Predicted RBP	13.33	□□□□□ -0.28
SPC25	YER018C	UTP10	P42945	1769 aa	Known RBP	13.32	□□□□□ -0.28
SPC25	YER018C	DCD1	P06773	312 aa		13.32	□□□□□ -0.28
SPC25	YER018C	YNG2	P38806	282 aa	Known RBP	13.32	□□□□□ -0.28
SPC25	YER018C	CTI6	Q08923	506 aa		13.32	□□□□□ -0.28
SPC25	YER018C	RPS19A	P07280	144 aa	Known RBP	13.31	□□□□□ -0.28
SPC25	YER018C	RPS19B	P07281	144 aa	Predicted RBP	13.31	□□□□□ -0.28
SPC25	YER018C	HPC2	Q01448	625 aa		13.31	□□□□□ -0.28
SPC25	YER018C	YLR271W	Q06152	274 aa		13.3	□□□□□ -0.28
SPC25	YER018C	YJR008W	P47085	338 aa		13.29	□□□□□ -0.28

Retrieved 100 of 5,963 RNA–protein pairs in 28.5 ms