RNA–Protein interactions for RNA: ENST00000641523.1

CASC19-238, Transcript of cancer susceptibility 19, human

BASIC

Gene CASC19, Length 1,558 nt, Biotype lincRNA.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CASC19-238	ENST00000641523	PTGER2	P43116	358 aa		10.99	□□□□□ -0.65
CASC19-238	ENST00000641523	ERICH6	Q7L0X2	663 aa		10.99	□□□□□ -0.65
CASC19-238	ENST00000641523	TOPBP1	Q92547	1522 aa		10.98	□□□□□ -0.65
CASC19-238	ENST00000641523	EVI5	O60447	810 aa		10.98	□□□□□ -0.65
CASC19-238	ENST00000641523	PDE4D	Q08499	809 aa		10.98	□□□□□ -0.65
CASC19-238	ENST00000641523	METRN	Q9UJH8	293 aa		10.98	□□□□□ -0.65
CASC19-238	ENST00000641523	C14orf37	Q86TY3	774 aa		10.97	□□□□□ -0.65
CASC19-238	ENST00000641523	KDM4C	Q9H3R0	1056 aa		10.97	□□□□□ -0.65
CASC19-238	ENST00000641523	DNMBP	Q6XZF7	1577 aa		10.96	□□□□□ -0.65
CASC19-238	ENST00000641523	PRIM1	P49642	420 aa	Known RBP	10.96	□□□□□ -0.65
CASC19-238	ENST00000641523	POTEI	P0CG38	1075 aa		10.95	□□□□□ -0.66
CASC19-238	ENST00000641523	C3orf67	Q6ZVT6	689 aa		10.95	□□□□□ -0.66
CASC19-238	ENST00000641523	IL27	Q8NEV9	243 aa		10.95	□□□□□ -0.66
CASC19-238	ENST00000641523	MINK1	Q8N4C8	1332 aa	Predicted RBP	10.94	□□□□□ -0.66
CASC19-238	ENST00000641523	PTCD2	Q8WV60	388 aa	Known RBP	10.93	□□□□□ -0.66
CASC19-238	ENST00000641523	GNPAT	O15228	680 aa		10.92	□□□□□ -0.66
CASC19-238	ENST00000641523	FECH	P22830	423 aa		10.92	□□□□□ -0.66
CASC19-238	ENST00000641523	FCHSD2	O94868	740 aa		10.91	□□□□□ -0.66
CASC19-238	ENST00000641523	MAP2K5	Q13163	448 aa		10.91	□□□□□ -0.66
CASC19-238	ENST00000641523	CCDC102A	Q96A19	550 aa		10.91	□□□□□ -0.66
CASC19-238	ENST00000641523	IRF6	O14896	467 aa		10.9	□□□□□ -0.66
CASC19-238	ENST00000641523	HIC1	Q14526	733 aa		10.9	□□□□□ -0.67
CASC19-238	ENST00000641523	ZNF608	Q9ULD9	1512 aa	Predicted RBP	10.89	□□□□□ -0.67
CASC19-238	ENST00000641523	ARX	Q96QS3	562 aa		10.88	□□□□□ -0.67
CASC19-238	ENST00000641523	ANO8	Q9HCE9	1232 aa	Predicted RBP	10.88	□□□□□ -0.67
CASC19-238	ENST00000641523	POLA1	P09884	1462 aa	Predicted RBP	10.87	□□□□□ -0.67
CASC19-238	ENST00000641523	ZNF316	A6NFI3	1004 aa	Predicted RBP	10.87	□□□□□ -0.67
CASC19-238	ENST00000641523	SLC34A2	O95436	690 aa		10.87	□□□□□ -0.67
CASC19-238	ENST00000641523	SUPT5H	O00267	1087 aa	Known RBP	10.86	□□□□□ -0.67
CASC19-238	ENST00000641523	PLSCR2	Q9NRY7	297 aa		10.86	□□□□□ -0.67
CASC19-238	ENST00000641523	EIF4G3	O43432	1585 aa	Known RBP	10.86	□□□□□ -0.67
CASC19-238	ENST00000641523	PTGDR	Q13258	359 aa		10.86	□□□□□ -0.67
CASC19-238	ENST00000641523	TARBP1	Q13395	1621 aa	Known RBP	10.85	□□□□□ -0.67
CASC19-238	ENST00000641523	FAM117A	Q9C073	453 aa		10.85	□□□□□ -0.67
CASC19-238	ENST00000641523	WDR97	A6NE52	1622 aa		10.84	□□□□□ -0.67
CASC19-238	ENST00000641523	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	10.84	□□□□□ -0.67
CASC19-238	ENST00000641523	SOGA1	O94964	1423 aa		10.84	□□□□□ -0.67
CASC19-238	ENST00000641523	AMHR2	Q16671	573 aa		10.83	□□□□□ -0.68
CASC19-238	ENST00000641523	CDHR5	Q9HBB8	845 aa		10.83	□□□□□ -0.68
CASC19-238	ENST00000641523	AQR	O60306	1485 aa	Known RBP eCLIP	10.82	□□□□□ -0.68	3e-6	■■■■□ 24.7
CASC19-238	ENST00000641523	PARP9	Q8IXQ6	854 aa		10.82	□□□□□ -0.68
CASC19-238	ENST00000641523	RBM33	Q96EV2	1170 aa	Known RBP	10.82	□□□□□ -0.68
CASC19-238	ENST00000641523	FGD5	Q6ZNL6	1462 aa		10.81	□□□□□ -0.68
CASC19-238	ENST00000641523	PHF14	O94880	888 aa		10.81	□□□□□ -0.68
CASC19-238	ENST00000641523	PCDHGA4	Q9Y5G9	962 aa		10.81	□□□□□ -0.68
CASC19-238	ENST00000641523	EN1	Q05925	392 aa	Predicted RBP	10.8	□□□□□ -0.68
CASC19-238	ENST00000641523	EPAS1	Q99814	870 aa		10.8	□□□□□ -0.68
CASC19-238	ENST00000641523	NPDC1	Q9NQX5	325 aa	Predicted RBP	10.8	□□□□□ -0.68
CASC19-238	ENST00000641523	PCDHGA10	Q9Y5H3	936 aa		10.8	□□□□□ -0.68
CASC19-238	ENST00000641523	CUX1	P39880	1505 aa		10.8	□□□□□ -0.68
CASC19-238	ENST00000641523	MAP3K7	O43318	606 aa		10.79	□□□□□ -0.68
CASC19-238	ENST00000641523	RAD54L2	Q9Y4B4	1467 aa		10.79	□□□□□ -0.68
CASC19-238	ENST00000641523	TDRD9	Q8NDG6	1382 aa	Known RBP	10.78	□□□□□ -0.68
CASC19-238	ENST00000641523	PLEKHG3	A1L390	1219 aa		10.77	□□□□□ -0.68
CASC19-238	ENST00000641523	SP7	Q8TDD2	431 aa	Predicted RBP	10.77	□□□□□ -0.68
CASC19-238	ENST00000641523	TTLL12	Q14166	644 aa	Predicted RBP	10.77	□□□□□ -0.69
CASC19-238	ENST00000641523	TSR1	Q2NL82	804 aa	Known RBP	10.77	□□□□□ -0.69
CASC19-238	ENST00000641523	SLAIN1	Q8ND83	568 aa		10.77	□□□□□ -0.69
CASC19-238	ENST00000641523	MAGI1	Q96QZ7	1491 aa	Predicted RBP	10.76	□□□□□ -0.69
CASC19-238	ENST00000641523	GRIN2B	Q13224	1484 aa		10.76	□□□□□ -0.69
CASC19-238	ENST00000641523	TYW1B	Q6NUM6	668 aa		10.75	□□□□□ -0.69
CASC19-238	ENST00000641523	DDRGK1	Q96HY6	314 aa		10.74	□□□□□ -0.69
CASC19-238	ENST00000641523	ARHGEF11	O15085	1522 aa		10.74	□□□□□ -0.69
CASC19-238	ENST00000641523	KDM4F	A0A1W2PPD8	638 aa		10.73	□□□□□ -0.69
CASC19-238	ENST00000641523	SNAPC4	Q5SXM2	1469 aa		10.73	□□□□□ -0.69
CASC19-238	ENST00000641523	REPIN1	Q9BWE0	567 aa	Known RBP	10.73	□□□□□ -0.69
CASC19-238	ENST00000641523	RIMBP3C	A6NJZ7	1639 aa		10.73	□□□□□ -0.69
CASC19-238	ENST00000641523	RIMBP3B	A6NNM3	1639 aa		10.73	□□□□□ -0.69
CASC19-238	ENST00000641523	RIMBP3	Q9UFD9	1639 aa		10.73	□□□□□ -0.69
CASC19-238	ENST00000641523	ABCA10	Q8WWZ4	1543 aa		10.73	□□□□□ -0.69
CASC19-238	ENST00000641523	WRN	Q14191	1432 aa	Predicted RBP eCLIP	10.73	□□□□□ -0.69
CASC19-238	ENST00000641523	CHMP7	Q8WUX9	453 aa	Predicted RBP	10.73	□□□□□ -0.69
CASC19-238	ENST00000641523	CHD1	O14646	1710 aa		10.72	□□□□□ -0.69
CASC19-238	ENST00000641523	GIGYF2	Q6Y7W6	1299 aa	Known RBP	10.72	□□□□□ -0.69
CASC19-238	ENST00000641523	JPH4	Q96JJ6	628 aa		10.71	□□□□□ -0.69
CASC19-238	ENST00000641523	SYNJ2	O15056	1496 aa		10.71	□□□□□ -0.7
CASC19-238	ENST00000641523	GAPVD1	Q14C86	1478 aa		10.71	□□□□□ -0.7
CASC19-238	ENST00000641523	MS4A1	P11836	297 aa		10.7	□□□□□ -0.7
CASC19-238	ENST00000641523	FBXW7	Q969H0	707 aa		10.7	□□□□□ -0.7
CASC19-238	ENST00000641523	SYNJ1	O43426	1573 aa		10.7	□□□□□ -0.7
CASC19-238	ENST00000641523	POTEJ	P0CG39	1038 aa		10.69	□□□□□ -0.7
CASC19-238	ENST00000641523	FOSB	P53539	338 aa		10.69	□□□□□ -0.7
CASC19-238	ENST00000641523	KHSRP	Q92945	711 aa	Known RBP eCLIP	10.69	□□□□□ -0.7	2e-6	■□□□□ 9.6
CASC19-238	ENST00000641523	PHOX2B	Q99453	314 aa		10.69	□□□□□ -0.7
CASC19-238	ENST00000641523	FAM161A	Q3B820	660 aa		10.68	□□□□□ -0.7
CASC19-238	ENST00000641523	TOP2B	Q02880	1626 aa		10.68	□□□□□ -0.7
CASC19-238	ENST00000641523	ABCA5	Q8WWZ7	1642 aa		10.67	□□□□□ -0.7
CASC19-238	ENST00000641523	NUDT7	P0C024	238 aa		10.67	□□□□□ -0.7
CASC19-238	ENST00000641523	MDM2	Q00987	491 aa	Predicted RBP	10.67	□□□□□ -0.7
CASC19-238	ENST00000641523	ZNF454	Q8N9F8	522 aa		10.67	□□□□□ -0.7
CASC19-238	ENST00000641523	ARSI	Q5FYB1	569 aa		10.66	□□□□□ -0.7
CASC19-238	ENST00000641523	C6orf132	Q5T0Z8	1188 aa		10.66	□□□□□ -0.7
CASC19-238	ENST00000641523	TMUB1	Q9BVT8	246 aa		10.66	□□□□□ -0.7
CASC19-238	ENST00000641523	BIVM-ERCC5	R4GMW8	1640 aa		10.66	□□□□□ -0.7
CASC19-238	ENST00000641523	ZDHHC16	Q969W1	377 aa		10.65	□□□□□ -0.7
CASC19-238	ENST00000641523	PBRM1	Q86U86	1689 aa		10.65	□□□□□ -0.7
CASC19-238	ENST00000641523	CLASP1	Q7Z460	1538 aa		10.65	□□□□□ -0.71
CASC19-238	ENST00000641523	HOXB3	P14651	431 aa	Predicted RBP	10.65	□□□□□ -0.71
CASC19-238	ENST00000641523	CYB5RL	Q6IPT4	315 aa		10.65	□□□□□ -0.71
CASC19-238	ENST00000641523	PADI6	Q6TGC4	694 aa		10.65	□□□□□ -0.71

Retrieved 100 of 20,778 RNA–protein pairs in 63 ms