RNA–Protein interactions for RNA: ENST00000609587.1

SMCHD1-213, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

Gene SMCHD1, Length 460 nt, Biotype processed transcript, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-213ENST00000609587 LARP6Q9BRS8 491 aaKnown RBP11.34□□□□□ -0.59
SMCHD1-213ENST00000609587 SOWAHBA6NEL2 793 aa11.32□□□□□ -0.6
SMCHD1-213ENST00000609587 MAP3K9P80192 1104 aa11.32□□□□□ -0.6
SMCHD1-213ENST00000609587 GTPBP6O43824 516 aaPredicted RBP11.29□□□□□ -0.6
SMCHD1-213ENST00000609587 LAPTM4BQ86VI4 370 aa11.29□□□□□ -0.6
SMCHD1-213ENST00000609587 Q6ZNB5 142 aa11.28□□□□□ -0.6
SMCHD1-213ENST00000609587 ZFRQ96KR1 1074 aaKnown RBP11.28□□□□□ -0.6
SMCHD1-213ENST00000609587 WBP1LQ9NX94 342 aa11.28□□□□□ -0.6
SMCHD1-213ENST00000609587 TYW1BQ6NUM6 668 aa11.27□□□□□ -0.61
SMCHD1-213ENST00000609587 FBXW7Q969H0 707 aa11.27□□□□□ -0.61
SMCHD1-213ENST00000609587 PHF14O94880 888 aa11.26□□□□□ -0.61
SMCHD1-213ENST00000609587 NYAP1Q6ZVC0 841 aa11.26□□□□□ -0.61
SMCHD1-213ENST00000609587 KIAA1468Q9P260 1216 aa11.26□□□□□ -0.61
SMCHD1-213ENST00000609587 SEPT9Q9UHD8 586 aaPredicted RBP11.26□□□□□ -0.61
SMCHD1-213ENST00000609587 LCE2BO14633 110 aa11.22□□□□□ -0.61
SMCHD1-213ENST00000609587 KCNC4Q03721 635 aa11.22□□□□□ -0.61
SMCHD1-213ENST00000609587 CADPS2Q86UW7 1296 aa11.2□□□□□ -0.62
SMCHD1-213ENST00000609587 ONECUT3O60422 494 aaPredicted RBP11.19□□□□□ -0.62
SMCHD1-213ENST00000609587 TRIM6-TRIM34B2RNG4 842 aa11.18□□□□□ -0.62
SMCHD1-213ENST00000609587 FAM98CQ17RN3 349 aaKnown RBP11.18□□□□□ -0.62
SMCHD1-213ENST00000609587 C6orf132Q5T0Z8 1188 aa11.18□□□□□ -0.62
SMCHD1-213ENST00000609587 HPS5Q9UPZ3 1129 aa11.16□□□□□ -0.62
SMCHD1-213ENST00000609587 EPAS1Q99814 870 aa11.15□□□□□ -0.62
SMCHD1-213ENST00000609587 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.15□□□□□ -0.62
SMCHD1-213ENST00000609587 TSR3Q9UJK0 312 aaKnown RBP11.15□□□□□ -0.62
SMCHD1-213ENST00000609587 LRCH3Q96II8 777 aa11.14□□□□□ -0.63
SMCHD1-213ENST00000609587 DPYSL4O14531 572 aa11.13□□□□□ -0.63
SMCHD1-213ENST00000609587 CAMK2BQ13554 666 aa11.13□□□□□ -0.63
SMCHD1-213ENST00000609587 RBM33Q96EV2 1170 aaKnown RBP11.12□□□□□ -0.63
SMCHD1-213ENST00000609587 DCAF8L2P0C7V8 631 aa11.11□□□□□ -0.63
SMCHD1-213ENST00000609587 LAPTM4AQ15012 233 aa11.1□□□□□ -0.63
SMCHD1-213ENST00000609587 DDX12PQ92771 950 aa11.08□□□□□ -0.64
SMCHD1-213ENST00000609587 TSKSQ9UJT2 592 aa11.08□□□□□ -0.64
SMCHD1-213ENST00000609587 GFRA3O60609 400 aa11.06□□□□□ -0.64
SMCHD1-213ENST00000609587 TSR1Q2NL82 804 aaKnown RBP11.06□□□□□ -0.64
SMCHD1-213ENST00000609587 TJAP1Q5JTD0 557 aa11.05□□□□□ -0.64
SMCHD1-213ENST00000609587 EN1Q05925 392 aaPredicted RBP11.04□□□□□ -0.64
SMCHD1-213ENST00000609587 TRAF7Q6Q0C0 670 aa11.04□□□□□ -0.64
SMCHD1-213ENST00000609587 NBR1Q14596 966 aa11.02□□□□□ -0.65
SMCHD1-213ENST00000609587 PRKD2Q9BZL6 878 aa11.02□□□□□ -0.65
SMCHD1-213ENST00000609587 NRG2O14511 850 aaPredicted RBP11□□□□□ -0.65
SMCHD1-213ENST00000609587 MAP3K7O43318 606 aa11□□□□□ -0.65
SMCHD1-213ENST00000609587 PPP4CP60510 307 aa11□□□□□ -0.65
SMCHD1-213ENST00000609587 SAMD7Q7Z3H4 446 aa11□□□□□ -0.65
SMCHD1-213ENST00000609587 PACS2Q86VP3 889 aa11□□□□□ -0.65
SMCHD1-213ENST00000609587 FAM198AQ9UFP1 575 aa11□□□□□ -0.65
SMCHD1-213ENST00000609587 C3orf80F5H4A9 247 aa10.99□□□□□ -0.65
SMCHD1-213ENST00000609587 SMAPO00193 183 aa10.99□□□□□ -0.65
SMCHD1-213ENST00000609587 MTRQ99707 1265 aa10.99□□□□□ -0.65
SMCHD1-213ENST00000609587 PDIA6Q15084 440 aa10.97□□□□□ -0.65
SMCHD1-213ENST00000609587 PPP1R18Q6NYC8 613 aa10.96□□□□□ -0.65
SMCHD1-213ENST00000609587 PRIM1P49642 420 aaKnown RBP10.95□□□□□ -0.66
SMCHD1-213ENST00000609587 BBXQ8WY36 941 aaPredicted RBP10.95□□□□□ -0.66
SMCHD1-213ENST00000609587 CDCA7LQ96GN5 454 aa10.95□□□□□ -0.66
SMCHD1-213ENST00000609587 IL21Q9HBE4 155 aa10.95□□□□□ -0.66
SMCHD1-213ENST00000609587 V9GY48 417 aaPredicted RBP10.94□□□□□ -0.66
SMCHD1-213ENST00000609587 PRSS12P56730 875 aa10.93□□□□□ -0.66
SMCHD1-213ENST00000609587 ZNF516Q92618 1163 aa10.93□□□□□ -0.66
SMCHD1-213ENST00000609587 NBPF26B4DH59 902 aa10.9□□□□□ -0.66
SMCHD1-213ENST00000609587 SLC24A1O60721 1099 aa10.9□□□□□ -0.66
SMCHD1-213ENST00000609587 APLP1P51693 650 aa10.9□□□□□ -0.66
SMCHD1-213ENST00000609587 TATDN2Q93075 761 aa10.89□□□□□ -0.67
SMCHD1-213ENST00000609587 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.89□□□□□ -0.67
SMCHD1-213ENST00000609587 PNMA3Q9UL41 463 aa10.88□□□□□ -0.67
SMCHD1-213ENST00000609587 RNF40O75150 1001 aa10.87□□□□□ -0.67
SMCHD1-213ENST00000609587 NKX2-3Q8TAU0 364 aa10.87□□□□□ -0.67
SMCHD1-213ENST00000609587 CDHR5Q9HBB8 845 aa10.86□□□□□ -0.67
SMCHD1-213ENST00000609587 PDZRN3Q9UPQ7 1066 aa10.86□□□□□ -0.67
SMCHD1-213ENST00000609587 SPDYE16A6NNV3 312 aaPredicted RBP10.85□□□□□ -0.67
SMCHD1-213ENST00000609587 CERKQ8TCT0 537 aa10.85□□□□□ -0.67
SMCHD1-213ENST00000609587 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.85□□□□□ -0.67
SMCHD1-213ENST00000609587 ZNF787Q6DD87 383 aa10.83□□□□□ -0.68
SMCHD1-213ENST00000609587 NUDT18Q6ZVK8 323 aa10.82□□□□□ -0.68
SMCHD1-213ENST00000609587 COPS2P61201 443 aa10.8□□□□□ -0.68
SMCHD1-213ENST00000609587 RBM27Q9P2N5 1060 aaKnown RBP10.8□□□□□ -0.68
SMCHD1-213ENST00000609587 GRXCR2A6NFK2 248 aa10.79□□□□□ -0.68
SMCHD1-213ENST00000609587 SPRYD3Q8NCJ5 442 aa10.79□□□□□ -0.68
SMCHD1-213ENST00000609587 TRIM67Q6ZTA4 783 aa10.78□□□□□ -0.68
SMCHD1-213ENST00000609587 ZNF775Q96BV0 537 aaPredicted RBP10.78□□□□□ -0.68
SMCHD1-213ENST00000609587 OSBPP22059 807 aa10.77□□□□□ -0.69
SMCHD1-213ENST00000609587 SWT1Q5T5J6 900 aaKnown RBP10.76□□□□□ -0.69
SMCHD1-213ENST00000609587 TTC13Q8NBP0 860 aa10.76□□□□□ -0.69
SMCHD1-213ENST00000609587 GGCXP38435 758 aa10.75□□□□□ -0.69
SMCHD1-213ENST00000609587 EMID1Q96A84 441 aaPredicted RBP10.75□□□□□ -0.69
SMCHD1-213ENST00000609587 ARIH1Q9Y4X5 557 aaPredicted RBP10.75□□□□□ -0.69
SMCHD1-213ENST00000609587 PADI6Q6TGC4 694 aa10.73□□□□□ -0.69
SMCHD1-213ENST00000609587 PAXIP1Q6ZW49 1069 aaPredicted RBP10.73□□□□□ -0.69
SMCHD1-213ENST00000609587 TMUB1Q9BVT8 246 aa10.73□□□□□ -0.69
SMCHD1-213ENST00000609587 ZPR1O75312 459 aa10.72□□□□□ -0.69
SMCHD1-213ENST00000609587 HDGFP51858 240 aaKnown RBP10.72□□□□□ -0.69
SMCHD1-213ENST00000609587 E2F4Q16254 413 aa10.72□□□□□ -0.69
SMCHD1-213ENST00000609587 SLF2Q8IX21 1173 aa10.72□□□□□ -0.69
SMCHD1-213ENST00000609587 NECTIN2Q92692 538 aa10.72□□□□□ -0.69
SMCHD1-213ENST00000609587 CFAP44Q96MT7 982 aa10.71□□□□□ -0.69
SMCHD1-213ENST00000609587 NPDC1Q9NQX5 325 aaPredicted RBP10.7□□□□□ -0.7
SMCHD1-213ENST00000609587 RNF223E7ERA6 249 aa10.69□□□□□ -0.7
SMCHD1-213ENST00000609587 TLL1O43897 1013 aa10.68□□□□□ -0.7
SMCHD1-213ENST00000609587 PLCB2Q00722 1185 aa10.68□□□□□ -0.7
SMCHD1-213ENST00000609587 MYT1Q01538 1121 aa10.67□□□□□ -0.7
SMCHD1-213ENST00000609587 BLOC1S3Q6QNY0 202 aa10.67□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 101.6 ms