RNA–Protein interactions for RNA: ENST00000563400.1

VPS35P1-201, Transcript of VPS35, retromer complex component pseudogene 1, humanhuman

BASIC

Gene VPS35P1, Length 1,518 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35P1-201ENST00000563400 ZNF428Q96B54 188 aa8.3□□□□□ -1.08
VPS35P1-201ENST00000563400 MTMR7Q9Y216 660 aa8.3□□□□□ -1.08
VPS35P1-201ENST00000563400 MFSD10Q14728 455 aa8.29□□□□□ -1.08
VPS35P1-201ENST00000563400 KDM4CQ9H3R0 1056 aa8.29□□□□□ -1.08
VPS35P1-201ENST00000563400 ZNF316A6NFI3 1004 aaPredicted RBP8.29□□□□□ -1.08
VPS35P1-201ENST00000563400 BARGINQ6ZT62 677 aa8.28□□□□□ -1.08
VPS35P1-201ENST00000563400 CDAN1Q8IWY9 1227 aa8.28□□□□□ -1.08
VPS35P1-201ENST00000563400 HS3ST6Q96QI5 342 aa8.28□□□□□ -1.08
VPS35P1-201ENST00000563400 AEBP1Q8IUX7 1158 aa8.27□□□□□ -1.09
VPS35P1-201ENST00000563400 ARHGEF1Q92888 912 aaKnown RBP8.27□□□□□ -1.09
VPS35P1-201ENST00000563400 PSDA5PKW4 1024 aaPredicted RBP8.26□□□□□ -1.09
VPS35P1-201ENST00000563400 NUDT7P0C024 238 aa8.26□□□□□ -1.09
VPS35P1-201ENST00000563400 VARS2Q5ST30 1063 aaKnown RBP8.25□□□□□ -1.09
VPS35P1-201ENST00000563400 FOXD4L5Q5VV16 416 aaPredicted RBP8.25□□□□□ -1.09
VPS35P1-201ENST00000563400 FOXD4L4Q8WXT5 416 aaPredicted RBP8.25□□□□□ -1.09
VPS35P1-201ENST00000563400 UPF1Q92900 1129 aaKnown RBP eCLIP8.25□□□□□ -1.09
VPS35P1-201ENST00000563400 OXER1Q8TDS5 423 aa8.24□□□□□ -1.09
VPS35P1-201ENST00000563400 KHSRPQ92945 711 aaKnown RBP eCLIP8.24□□□□□ -1.09
VPS35P1-201ENST00000563400 AK7Q96M32 723 aa8.24□□□□□ -1.09
VPS35P1-201ENST00000563400 NACADO15069 1562 aa8.24□□□□□ -1.09
VPS35P1-201ENST00000563400 RBM25P49756 843 aaKnown RBP8.24□□□□□ -1.09
VPS35P1-201ENST00000563400 MAP3K9P80192 1104 aa8.24□□□□□ -1.09
VPS35P1-201ENST00000563400 TRAIPQ9BWF2 469 aa8.24□□□□□ -1.09
VPS35P1-201ENST00000563400 MYO15BQ96JP2 1530 aa8.23□□□□□ -1.09
VPS35P1-201ENST00000563400 RB1CC1Q8TDY2 1594 aa8.22□□□□□ -1.09
VPS35P1-201ENST00000563400 CDK11BP21127 795 aaKnown RBP8.22□□□□□ -1.09
VPS35P1-201ENST00000563400 CDK11AQ9UQ88 783 aaPredicted RBP8.22□□□□□ -1.09
VPS35P1-201ENST00000563400 CLUAP1Q96AJ1 413 aa8.21□□□□□ -1.1
VPS35P1-201ENST00000563400 ZNF687Q8N1G0 1237 aa8.2□□□□□ -1.1
VPS35P1-201ENST00000563400 LHX6Q9UPM6 363 aa8.2□□□□□ -1.1
VPS35P1-201ENST00000563400 TRAK2O60296 914 aa8.19□□□□□ -1.1
VPS35P1-201ENST00000563400 DCAF1Q9Y4B6 1507 aa8.19□□□□□ -1.1
VPS35P1-201ENST00000563400 E2F4Q16254 413 aa8.19□□□□□ -1.1
VPS35P1-201ENST00000563400 TMCO4Q5TGY1 634 aa8.19□□□□□ -1.1
VPS35P1-201ENST00000563400 HSP90B1P14625 803 aaKnown RBP8.18□□□□□ -1.1
VPS35P1-201ENST00000563400 MFAP1P55081 439 aaKnown RBP8.18□□□□□ -1.1
VPS35P1-201ENST00000563400 CAMK2BQ13554 666 aa8.18□□□□□ -1.1
VPS35P1-201ENST00000563400 FAM117AQ9C073 453 aa8.18□□□□□ -1.1
VPS35P1-201ENST00000563400 GZF1Q9H116 711 aaPredicted RBP8.18□□□□□ -1.1
VPS35P1-201ENST00000563400 EVI5O60447 810 aa8.17□□□□□ -1.1
VPS35P1-201ENST00000563400 PDE4DQ08499 809 aa8.17□□□□□ -1.1
VPS35P1-201ENST00000563400 FLIIQ13045 1269 aa8.17□□□□□ -1.1
VPS35P1-201ENST00000563400 PPP4R3BQ5MIZ7 849 aa8.17□□□□□ -1.1
VPS35P1-201ENST00000563400 KCNH8Q96L42 1107 aa8.17□□□□□ -1.1
VPS35P1-201ENST00000563400 POTEB3A0JP26 581 aa8.16□□□□□ -1.1
VPS35P1-201ENST00000563400 HMGB1P09429 215 aaKnown RBP8.16□□□□□ -1.1
VPS35P1-201ENST00000563400 PBX2P40425 430 aa8.16□□□□□ -1.1
VPS35P1-201ENST00000563400 POTEBQ6S5H4 581 aa8.16□□□□□ -1.1
VPS35P1-201ENST00000563400 KRI1Q8N9T8 703 aaKnown RBP8.16□□□□□ -1.1
VPS35P1-201ENST00000563400 KDM4FA0A1W2PPD8 638 aa8.15□□□□□ -1.1
VPS35P1-201ENST00000563400 TRIM66O15016 1216 aa8.15□□□□□ -1.1
VPS35P1-201ENST00000563400 EMILIN3Q9NT22 766 aa8.15□□□□□ -1.1
VPS35P1-201ENST00000563400 ZCCHC6Q5VYS8 1495 aaKnown RBP8.14□□□□□ -1.11
VPS35P1-201ENST00000563400 A6NJR5 290 aa8.13□□□□□ -1.11
VPS35P1-201ENST00000563400 ONECUT3O60422 494 aaPredicted RBP8.13□□□□□ -1.11
VPS35P1-201ENST00000563400 ANO8Q9HCE9 1232 aaPredicted RBP8.13□□□□□ -1.11
VPS35P1-201ENST00000563400 DPYSL4O14531 572 aa8.13□□□□□ -1.11
VPS35P1-201ENST00000563400 PUS7Q96PZ0 661 aaKnown RBP8.13□□□□□ -1.11
VPS35P1-201ENST00000563400 PLEKHG3A1L390 1219 aa8.12□□□□□ -1.11
VPS35P1-201ENST00000563400 ZNF454Q8N9F8 522 aa8.12□□□□□ -1.11
VPS35P1-201ENST00000563400 ZNF777Q9ULD5 760 aaPredicted RBP8.12□□□□□ -1.11
VPS35P1-201ENST00000563400 SPDYE16A6NNV3 312 aaPredicted RBP8.11□□□□□ -1.11
VPS35P1-201ENST00000563400 SMYD5Q6GMV2 418 aa8.11□□□□□ -1.11
VPS35P1-201ENST00000563400 CHMP4AQ9BY43 222 aa8.11□□□□□ -1.11
VPS35P1-201ENST00000563400 RBM26Q5T8P6 1007 aaKnown RBP8.1□□□□□ -1.11
VPS35P1-201ENST00000563400 JPH4Q96JJ6 628 aa8.1□□□□□ -1.11
VPS35P1-201ENST00000563400 KRTAP3-3Q9BYR6 98 aa8.1□□□□□ -1.11
VPS35P1-201ENST00000563400 KRTAP3-2Q9BYR7 98 aa8.1□□□□□ -1.11
VPS35P1-201ENST00000563400 ARHGAP33O14559 1287 aa8.09□□□□□ -1.11
VPS35P1-201ENST00000563400 IRF5Q13568 498 aa8.09□□□□□ -1.11
VPS35P1-201ENST00000563400 ARIH1Q9Y4X5 557 aaPredicted RBP8.09□□□□□ -1.11
VPS35P1-201ENST00000563400 FOSBP53539 338 aa8.08□□□□□ -1.12
VPS35P1-201ENST00000563400 RETREG2Q8NC44 543 aa8.08□□□□□ -1.12
VPS35P1-201ENST00000563400 E9PSI1 815 aa8.08□□□□□ -1.12
VPS35P1-201ENST00000563400 ZDHHC16Q969W1 377 aa8.08□□□□□ -1.12
VPS35P1-201ENST00000563400 LSM11P83369 360 aaKnown RBP eCLIP8.07□□□□□ -1.12
VPS35P1-201ENST00000563400 ANKRD13DQ6ZTN6 518 aa8.07□□□□□ -1.12
VPS35P1-201ENST00000563400 FBXW7Q969H0 707 aa8.07□□□□□ -1.12
VPS35P1-201ENST00000563400 PHF14O94880 888 aa8.06□□□□□ -1.12
VPS35P1-201ENST00000563400 PTPREP23469 700 aa8.06□□□□□ -1.12
VPS35P1-201ENST00000563400 PTGER2P43116 358 aa8.06□□□□□ -1.12
VPS35P1-201ENST00000563400 PDIA6Q15084 440 aa8.06□□□□□ -1.12
VPS35P1-201ENST00000563400 GPIHBP1Q8IV16 184 aa8.06□□□□□ -1.12
VPS35P1-201ENST00000563400 EPAS1Q99814 870 aa8.06□□□□□ -1.12
VPS35P1-201ENST00000563400 TYW1BQ6NUM6 668 aa8.05□□□□□ -1.12
VPS35P1-201ENST00000563400 SPNS2Q8IVW8 549 aa8.05□□□□□ -1.12
VPS35P1-201ENST00000563400 BCL2L12Q9HB09 334 aa8.05□□□□□ -1.12
VPS35P1-201ENST00000563400 KCNK17Q96T54 332 aa8.04□□□□□ -1.12
VPS35P1-201ENST00000563400 AXIN2Q9Y2T1 843 aa8.04□□□□□ -1.12
VPS35P1-201ENST00000563400 USP35Q9P2H5 1018 aa8.03□□□□□ -1.12
VPS35P1-201ENST00000563400 PCDHGA10Q9Y5H3 936 aa8.03□□□□□ -1.12
VPS35P1-201ENST00000563400 DDX12PQ92771 950 aa8.02□□□□□ -1.13
VPS35P1-201ENST00000563400 CCDC97Q96F63 343 aaPredicted RBP8.02□□□□□ -1.13
VPS35P1-201ENST00000563400 STAC3Q96MF2 364 aa8.02□□□□□ -1.13
VPS35P1-201ENST00000563400 SERPINA10Q9UK55 444 aa8.02□□□□□ -1.13
VPS35P1-201ENST00000563400 TK2O00142 265 aa8.01□□□□□ -1.13
VPS35P1-201ENST00000563400 PSEN2P49810 448 aa8.01□□□□□ -1.13
VPS35P1-201ENST00000563400 MLLT3P42568 568 aaPredicted RBP8□□□□□ -1.13
VPS35P1-201ENST00000563400 DDRGK1Q96HY6 314 aa8□□□□□ -1.13
VPS35P1-201ENST00000563400 ADAM33Q9BZ11 813 aa8□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 29.7 ms