RNA–Protein interactions for RNA: ENST00000561076.1

RTF1-207, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 3

Gene RTF1, Length 314 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-207ENST00000561076 BANK1Q8NDB2 785 aa3.05□□□□□ -1.92
RTF1-207ENST00000561076 PBXIP1Q96AQ6 731 aa3.05□□□□□ -1.92
RTF1-207ENST00000561076 AKT1S1Q96B36 256 aa3.05□□□□□ -1.92
RTF1-207ENST00000561076 COG6Q9Y2V7 657 aa3.05□□□□□ -1.92
RTF1-207ENST00000561076 MS4A1P11836 297 aa3.04□□□□□ -1.92
RTF1-207ENST00000561076 DIXDC1Q155Q3 683 aa3.04□□□□□ -1.92
RTF1-207ENST00000561076 SND1Q7KZF4 910 aaKnown RBP eCLIP3.04□□□□□ -1.92
RTF1-207ENST00000561076 GLMNQ92990 594 aa3.04□□□□□ -1.92
RTF1-207ENST00000561076 BEGAINQ9BUH8 593 aa3.04□□□□□ -1.92
RTF1-207ENST00000561076 GPCPD1Q9NPB8 672 aa3.04□□□□□ -1.92
RTF1-207ENST00000561076 IVNS1ABPQ9Y6Y0 642 aa3.04□□□□□ -1.92
RTF1-207ENST00000561076 G3V3G9 751 aa3.03□□□□□ -1.92
RTF1-207ENST00000561076 SSTR3P32745 418 aaPredicted RBP3.03□□□□□ -1.92
RTF1-207ENST00000561076 MDM2Q00987 491 aaPredicted RBP3.03□□□□□ -1.92
RTF1-207ENST00000561076 GDPD2Q9HCC8 539 aa3.03□□□□□ -1.92
RTF1-207ENST00000561076 GPHNQ9NQX3 736 aaPredicted RBP3.03□□□□□ -1.92
RTF1-207ENST00000561076 GPR37O15354 613 aa3.02□□□□□ -1.93
RTF1-207ENST00000561076 TBC1D12O60347 775 aa3.02□□□□□ -1.93
RTF1-207ENST00000561076 NCLP19338 710 aaKnown RBP3.02□□□□□ -1.93
RTF1-207ENST00000561076 CLK2P49760 499 aaKnown RBP3.02□□□□□ -1.93
RTF1-207ENST00000561076 PROCA1Q8NCQ7 364 aaPredicted RBP3.02□□□□□ -1.93
RTF1-207ENST00000561076 RFC5P40937 340 aa3.01□□□□□ -1.93
RTF1-207ENST00000561076 IFNL1Q8IU54 200 aa3.01□□□□□ -1.93
RTF1-207ENST00000561076 FAM177A1Q8N128 213 aaPredicted RBP3.01□□□□□ -1.93
RTF1-207ENST00000561076 CCER1Q8TC90 406 aaPredicted RBP3.01□□□□□ -1.93
RTF1-207ENST00000561076 DDX12PQ92771 950 aa3.01□□□□□ -1.93
RTF1-207ENST00000561076 CHMP4AQ9BY43 222 aa3.01□□□□□ -1.93
RTF1-207ENST00000561076 VRTNQ9H8Y1 702 aa3.01□□□□□ -1.93
RTF1-207ENST00000561076 SNRKQ9NRH2 765 aa3.01□□□□□ -1.93
RTF1-207ENST00000561076 EMILIN3Q9NT22 766 aa3.01□□□□□ -1.93
RTF1-207ENST00000561076 PPP1R1BQ9UD71 204 aaPredicted RBP3.01□□□□□ -1.93
RTF1-207ENST00000561076 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP3□□□□□ -1.93
RTF1-207ENST00000561076 ERCC3P19447 782 aa3□□□□□ -1.93
RTF1-207ENST00000561076 FECHP22830 423 aa3□□□□□ -1.93
RTF1-207ENST00000561076 WASHC4Q2M389 1173 aa3□□□□□ -1.93
RTF1-207ENST00000561076 HDGFL1Q5TGJ6 251 aa3□□□□□ -1.93
RTF1-207ENST00000561076 ARID4BQ4LE39 1312 aaPredicted RBP2.99□□□□□ -1.93
RTF1-207ENST00000561076 NUTM2BA6NNL0 878 aaPredicted RBP2.99□□□□□ -1.93
RTF1-207ENST00000561076 NUTM2EB1AL46 878 aaPredicted RBP2.99□□□□□ -1.93
RTF1-207ENST00000561076 MAP3K13O43283 966 aa2.99□□□□□ -1.93
RTF1-207ENST00000561076 AP1G2O75843 785 aa2.99□□□□□ -1.93
RTF1-207ENST00000561076 DSG2Q14126 1118 aa2.99□□□□□ -1.93
RTF1-207ENST00000561076 TSR1Q2NL82 804 aaKnown RBP2.99□□□□□ -1.93
RTF1-207ENST00000561076 NUTM2DQ5VT03 806 aaPredicted RBP2.99□□□□□ -1.93
RTF1-207ENST00000561076 NUTM2AQ8IVF1 878 aaPredicted RBP2.99□□□□□ -1.93
RTF1-207ENST00000561076 PLPP6Q8IY26 295 aa2.99□□□□□ -1.93
RTF1-207ENST00000561076 REM2Q8IYK8 340 aaPredicted RBP2.99□□□□□ -1.93
RTF1-207ENST00000561076 UPF1Q92900 1129 aaKnown RBP eCLIP2.99□□□□□ -1.93
RTF1-207ENST00000561076 MS4A4AQ96JQ5 239 aa2.99□□□□□ -1.93
RTF1-207ENST00000561076 DRC1Q96MC2 740 aa2.99□□□□□ -1.93
RTF1-207ENST00000561076 FARP1Q9Y4F1 1045 aaPredicted RBP2.99□□□□□ -1.93
RTF1-207ENST00000561076 CCDC61Q9Y6R9 512 aa2.99□□□□□ -1.93
RTF1-207ENST00000561076 OATP04181 439 aa2.98□□□□□ -1.93
RTF1-207ENST00000561076 OSBPP22059 807 aa2.98□□□□□ -1.93
RTF1-207ENST00000561076 LMOD1P29536 600 aaPredicted RBP2.98□□□□□ -1.93
RTF1-207ENST00000561076 PTGDRQ13258 359 aa2.98□□□□□ -1.93
RTF1-207ENST00000561076 CSPP1Q1MSJ5 1256 aa2.98□□□□□ -1.93
RTF1-207ENST00000561076 ZNF326Q5BKZ1 582 aaKnown RBP2.98□□□□□ -1.93
RTF1-207ENST00000561076 MYSM1Q5VVJ2 828 aa2.98□□□□□ -1.93
RTF1-207ENST00000561076 NUTM1Q86Y26 1132 aa2.98□□□□□ -1.93
RTF1-207ENST00000561076 PNMA1Q8ND90 353 aa2.98□□□□□ -1.93
RTF1-207ENST00000561076 MRRFQ96E11 262 aaKnown RBP2.98□□□□□ -1.93
RTF1-207ENST00000561076 TMEM106CQ9BVX2 250 aa2.98□□□□□ -1.93
RTF1-207ENST00000561076 TBC1D2Q9BYX2 928 aa2.98□□□□□ -1.93
RTF1-207ENST00000561076 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP2.98□□□□□ -1.93
RTF1-207ENST00000561076 NDUFB9Q9Y6M9 179 aa2.98□□□□□ -1.93
RTF1-207ENST00000561076 RBM47A0AV96 593 aaKnown RBP2.97□□□□□ -1.93
RTF1-207ENST00000561076 POM121CA8CG34 1229 aa2.97□□□□□ -1.93
RTF1-207ENST00000561076 MAP3K7O43318 606 aa2.97□□□□□ -1.93
RTF1-207ENST00000561076 FOXK1P85037 733 aa2.97□□□□□ -1.93
RTF1-207ENST00000561076 SF3A1Q15459 793 aaKnown RBP2.97□□□□□ -1.93
RTF1-207ENST00000561076 CHADLQ6NUI6 762 aa2.97□□□□□ -1.93
RTF1-207ENST00000561076 RIC3Q7Z5B4 369 aa2.97□□□□□ -1.93
RTF1-207ENST00000561076 CCDC125Q86Z20 511 aa2.97□□□□□ -1.93
RTF1-207ENST00000561076 ANKRD13AQ8IZ07 590 aa2.97□□□□□ -1.93
RTF1-207ENST00000561076 FAM9AQ8IZU1 332 aaPredicted RBP2.97□□□□□ -1.93
RTF1-207ENST00000561076 OXER1Q8TDS5 423 aa2.97□□□□□ -1.93
RTF1-207ENST00000561076 GNL3Q9BVP2 549 aaKnown RBP eCLIP2.97□□□□□ -1.93
RTF1-207ENST00000561076 REPIN1Q9BWE0 567 aaKnown RBP2.97□□□□□ -1.93
RTF1-207ENST00000561076 BCL2L13Q9BXK5 485 aa2.97□□□□□ -1.93
RTF1-207ENST00000561076 BIN2Q9UBW5 565 aaPredicted RBP2.97□□□□□ -1.93
RTF1-207ENST00000561076 TBC1D2BQ9UPU7 963 aa2.97□□□□□ -1.93
RTF1-207ENST00000561076 TCF3P15923 654 aa2.96□□□□□ -1.94
RTF1-207ENST00000561076 SEMA3FQ13275 785 aa2.96□□□□□ -1.94
RTF1-207ENST00000561076 CDCA8Q53HL2 280 aa2.96□□□□□ -1.94
RTF1-207ENST00000561076 MTMR14Q8NCE2 650 aa2.96□□□□□ -1.94
RTF1-207ENST00000561076 SREK1Q8WXA9 508 aaKnown RBP2.96□□□□□ -1.94
RTF1-207ENST00000561076 KIF12Q96FN5 646 aa2.96□□□□□ -1.94
RTF1-207ENST00000561076 PPP1R12CQ9BZL4 782 aa2.96□□□□□ -1.94
RTF1-207ENST00000561076 FAM217BQ9NTX9 383 aaPredicted RBP2.96□□□□□ -1.94
RTF1-207ENST00000561076 SMARCA5O60264 1052 aaPredicted RBP2.95□□□□□ -1.94
RTF1-207ENST00000561076 ARID4AP29374 1257 aaPredicted RBP2.95□□□□□ -1.94
RTF1-207ENST00000561076 SOX11P35716 441 aa2.95□□□□□ -1.94
RTF1-207ENST00000561076 PTGER2P43116 358 aa2.95□□□□□ -1.94
RTF1-207ENST00000561076 ZNF710Q8N1W2 664 aa2.95□□□□□ -1.94
RTF1-207ENST00000561076 GIPC2Q8TF65 315 aa2.95□□□□□ -1.94
RTF1-207ENST00000561076 TSC1Q92574 1164 aa2.95□□□□□ -1.94
RTF1-207ENST00000561076 SIRT1Q96EB6 747 aa2.95□□□□□ -1.94
RTF1-207ENST00000561076 RBM33Q96EV2 1170 aaKnown RBP2.95□□□□□ -1.94
RTF1-207ENST00000561076 TFIP11Q9UBB9 837 aaKnown RBP2.95□□□□□ -1.94
Retrieved 100 of 20,778 RNA–protein pairs in 19.1 ms