RNA–Protein interactions for RNA: ENST00000557548.1

TRAV28-201, Transcript of T cell receptor alpha variable 28 (pseudogene), humanhuman

BASIC

Gene TRAV28, Length 323 nt, Biotype TR V pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV28-201ENST00000557548 VPS9D1Q9Y2B5 631 aa6.15□□□□□ -1.42
TRAV28-201ENST00000557548 TESPA1A2RU30 521 aaPredicted RBP6.14□□□□□ -1.43
TRAV28-201ENST00000557548 EFCAB3Q8N7B9 438 aa6.14□□□□□ -1.43
TRAV28-201ENST00000557548 FBXO22Q8NEZ5 403 aa6.14□□□□□ -1.43
TRAV28-201ENST00000557548 KCNH8Q96L42 1107 aa6.14□□□□□ -1.43
TRAV28-201ENST00000557548 SLC24A3Q9HC58 644 aa6.14□□□□□ -1.43
TRAV28-201ENST00000557548 SLC34A2O95436 690 aa6.13□□□□□ -1.43
TRAV28-201ENST00000557548 NLRP6P59044 892 aa6.13□□□□□ -1.43
TRAV28-201ENST00000557548 PHF8Q9UPP1 1060 aa6.13□□□□□ -1.43
TRAV28-201ENST00000557548 KCNC4Q03721 635 aa6.12□□□□□ -1.43
TRAV28-201ENST00000557548 NCKAP5LQ9HCH0 1330 aa6.1□□□□□ -1.43
TRAV28-201ENST00000557548 SOX12O15370 315 aa6.1□□□□□ -1.43
TRAV28-201ENST00000557548 HOMEZQ8IX15 550 aa6.09□□□□□ -1.43
TRAV28-201ENST00000557548 LARP6Q9BRS8 491 aaKnown RBP6.09□□□□□ -1.43
TRAV28-201ENST00000557548 PRKD2Q9BZL6 878 aa6.09□□□□□ -1.43
TRAV28-201ENST00000557548 BHMG1C9JSJ3 638 aaPredicted RBP6.08□□□□□ -1.44
TRAV28-201ENST00000557548 PPP4R3BQ5MIZ7 849 aa6.08□□□□□ -1.44
TRAV28-201ENST00000557548 SLC4A5Q9BY07 1137 aa6.08□□□□□ -1.44
TRAV28-201ENST00000557548 PDZRN3Q9UPQ7 1066 aa6.08□□□□□ -1.44
TRAV28-201ENST00000557548 WIPF1O43516 503 aa6.07□□□□□ -1.44
TRAV28-201ENST00000557548 ZMYND10O75800 440 aa6.07□□□□□ -1.44
TRAV28-201ENST00000557548 MRPL50Q8N5N7 158 aaKnown RBP6.07□□□□□ -1.44
TRAV28-201ENST00000557548 KCNK17Q96T54 332 aa6.07□□□□□ -1.44
TRAV28-201ENST00000557548 DAXXQ9UER7 740 aaPredicted RBP6.07□□□□□ -1.44
TRAV28-201ENST00000557548 POTECB2RU33 542 aa6.06□□□□□ -1.44
TRAV28-201ENST00000557548 SMYD5Q6GMV2 418 aa6.06□□□□□ -1.44
TRAV28-201ENST00000557548 V9GY48 417 aaPredicted RBP6.06□□□□□ -1.44
TRAV28-201ENST00000557548 SUPT5HO00267 1087 aaKnown RBP6.05□□□□□ -1.44
TRAV28-201ENST00000557548 WFS1O76024 890 aa6.05□□□□□ -1.44
TRAV28-201ENST00000557548 PDE4AP27815 886 aa6.05□□□□□ -1.44
TRAV28-201ENST00000557548 MFSD10Q14728 455 aa6.05□□□□□ -1.44
TRAV28-201ENST00000557548 MS4A4AQ96JQ5 239 aa6.05□□□□□ -1.44
TRAV28-201ENST00000557548 NYAP1Q6ZVC0 841 aa6.04□□□□□ -1.44
TRAV28-201ENST00000557548 DDX27Q96GQ7 796 aaKnown RBP6.04□□□□□ -1.44
TRAV28-201ENST00000557548 CRISPLD2Q9H0B8 497 aa6.04□□□□□ -1.44
TRAV28-201ENST00000557548 BARGINQ6ZT62 677 aa6.03□□□□□ -1.44
TRAV28-201ENST00000557548 ARIH1Q9Y4X5 557 aaPredicted RBP6.02□□□□□ -1.45
TRAV28-201ENST00000557548 KDM4FA0A1W2PPD8 638 aa6.01□□□□□ -1.45
TRAV28-201ENST00000557548 KIF3CO14782 793 aa6.01□□□□□ -1.45
TRAV28-201ENST00000557548 CAMK2BQ13554 666 aa6.01□□□□□ -1.45
TRAV28-201ENST00000557548 RBM26Q5T8P6 1007 aaKnown RBP6.01□□□□□ -1.45
TRAV28-201ENST00000557548 FAM181BA6NEQ2 426 aa6□□□□□ -1.45
TRAV28-201ENST00000557548 MLLT3P42568 568 aaPredicted RBP6□□□□□ -1.45
TRAV28-201ENST00000557548 GPIHBP1Q8IV16 184 aa6□□□□□ -1.45
TRAV28-201ENST00000557548 GPBP1L1Q9HC44 474 aaPredicted RBP6□□□□□ -1.45
TRAV28-201ENST00000557548 AK7Q96M32 723 aa5.99□□□□□ -1.45
TRAV28-201ENST00000557548 NBPF3Q9H094 633 aa5.99□□□□□ -1.45
TRAV28-201ENST00000557548 C2orf72A6NCS6 295 aa5.98□□□□□ -1.45
TRAV28-201ENST00000557548 MYT1Q01538 1121 aa5.98□□□□□ -1.45
TRAV28-201ENST00000557548 KRI1Q8N9T8 703 aaKnown RBP5.98□□□□□ -1.45
TRAV28-201ENST00000557548 ANKK1Q8NFD2 765 aa5.97□□□□□ -1.45
TRAV28-201ENST00000557548 PPP1R15BQ5SWA1 713 aa5.96□□□□□ -1.46
TRAV28-201ENST00000557548 IL27Q8NEV9 243 aa5.96□□□□□ -1.46
TRAV28-201ENST00000557548 KRTAP4-8Q9BYQ9 185 aa5.96□□□□□ -1.46
TRAV28-201ENST00000557548 PKDCCQ504Y2 493 aa5.95□□□□□ -1.46
TRAV28-201ENST00000557548 KDM4CQ9H3R0 1056 aa5.95□□□□□ -1.46
TRAV28-201ENST00000557548 DPYSL4O14531 572 aa5.94□□□□□ -1.46
TRAV28-201ENST00000557548 DGAT1O75907 488 aa5.94□□□□□ -1.46
TRAV28-201ENST00000557548 TRIM66O15016 1216 aa5.93□□□□□ -1.46
TRAV28-201ENST00000557548 PDE4DQ08499 809 aa5.93□□□□□ -1.46
TRAV28-201ENST00000557548 GPHNQ9NQX3 736 aaPredicted RBP5.93□□□□□ -1.46
TRAV28-201ENST00000557548 ZBED2Q9BTP6 218 aa5.92□□□□□ -1.46
TRAV28-201ENST00000557548 EMILIN3Q9NT22 766 aa5.92□□□□□ -1.46
TRAV28-201ENST00000557548 NFX1Q12986 1120 aaKnown RBP5.91□□□□□ -1.46
TRAV28-201ENST00000557548 PDIA6Q15084 440 aa5.91□□□□□ -1.46
TRAV28-201ENST00000557548 SPDYE16A6NNV3 312 aaPredicted RBP5.9□□□□□ -1.46
TRAV28-201ENST00000557548 BCAMP50895 628 aa5.9□□□□□ -1.46
TRAV28-201ENST00000557548 DSG2Q14126 1118 aa5.9□□□□□ -1.46
TRAV28-201ENST00000557548 SOWAHBA6NEL2 793 aa5.89□□□□□ -1.47
TRAV28-201ENST00000557548 GPR37O15354 613 aa5.89□□□□□ -1.47
TRAV28-201ENST00000557548 PTCD2Q8WV60 388 aaKnown RBP5.89□□□□□ -1.47
TRAV28-201ENST00000557548 ZMYND15Q9H091 742 aa5.89□□□□□ -1.47
TRAV28-201ENST00000557548 BCL2L12Q9HB09 334 aa5.89□□□□□ -1.47
TRAV28-201ENST00000557548 WBP1LQ9NX94 342 aa5.88□□□□□ -1.47
TRAV28-201ENST00000557548 KRTAP9-1A8MXZ3 250 aaPredicted RBP5.87□□□□□ -1.47
TRAV28-201ENST00000557548 UBTFP17480 764 aaKnown RBP5.87□□□□□ -1.47
TRAV28-201ENST00000557548 XP32Q5T750 250 aa5.87□□□□□ -1.47
TRAV28-201ENST00000557548 FAM117AQ9C073 453 aa5.87□□□□□ -1.47
TRAV28-201ENST00000557548 RSPH6AQ9H0K4 717 aa5.87□□□□□ -1.47
TRAV28-201ENST00000557548 ANO8Q9HCE9 1232 aaPredicted RBP5.87□□□□□ -1.47
TRAV28-201ENST00000557548 PTPREP23469 700 aa5.86□□□□□ -1.47
TRAV28-201ENST00000557548 PPP1R18Q6NYC8 613 aa5.86□□□□□ -1.47
TRAV28-201ENST00000557548 TMC2Q8TDI7 906 aa5.86□□□□□ -1.47
TRAV28-201ENST00000557548 NUTM2FA1L443 756 aa5.85□□□□□ -1.47
TRAV28-201ENST00000557548 GRXCR2A6NFK2 248 aa5.85□□□□□ -1.47
TRAV28-201ENST00000557548 FOXK1P85037 733 aa5.85□□□□□ -1.47
TRAV28-201ENST00000557548 CCDC102AQ96A19 550 aa5.85□□□□□ -1.47
TRAV28-201ENST00000557548 MINK1Q8N4C8 1332 aaPredicted RBP5.84□□□□□ -1.47
TRAV28-201ENST00000557548 PLEKHG3A1L390 1219 aa5.84□□□□□ -1.47
TRAV28-201ENST00000557548 KRTAP9-2Q9BYQ4 174 aa5.84□□□□□ -1.47
TRAV28-201ENST00000557548 MAP2K5Q13163 448 aa5.83□□□□□ -1.48
TRAV28-201ENST00000557548 PLPP6Q8IY26 295 aa5.83□□□□□ -1.48
TRAV28-201ENST00000557548 ARID3AQ99856 593 aa5.83□□□□□ -1.48
TRAV28-201ENST00000557548 EIF4ENIF1Q9NRA8 985 aaKnown RBP5.83□□□□□ -1.48
TRAV28-201ENST00000557548 PODXL2Q9NZ53 605 aa5.83□□□□□ -1.48
TRAV28-201ENST00000557548 KRTAP9-6A0A140TA67 174 aa5.82□□□□□ -1.48
TRAV28-201ENST00000557548 KRTAP1-3Q8IUG1 177 aa5.82□□□□□ -1.48
TRAV28-201ENST00000557548 PARP9Q8IXQ6 854 aa5.82□□□□□ -1.48
TRAV28-201ENST00000557548 DDRGK1Q96HY6 314 aa5.82□□□□□ -1.48
TRAV28-201ENST00000557548 IRF6O14896 467 aa5.81□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms