RNA–Protein interactions for RNA: ENST00000555535.1

SRP54-207, Transcript of signal recognition particle 54, humanhuman

TSL 4

Gene SRP54, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-207ENST00000555535 KCNC4Q03721 635 aa11.71□□□□□ -0.53
SRP54-207ENST00000555535 TYW1BQ6NUM6 668 aa11.69□□□□□ -0.54
SRP54-207ENST00000555535 LARP6Q9BRS8 491 aaKnown RBP11.69□□□□□ -0.54
SRP54-207ENST00000555535 PCDHGA10Q9Y5H3 936 aa11.69□□□□□ -0.54
SRP54-207ENST00000555535 BCAMP50895 628 aa11.68□□□□□ -0.54
SRP54-207ENST00000555535 PROX2Q3B8N5 592 aa11.68□□□□□ -0.54
SRP54-207ENST00000555535 PHF14O94880 888 aa11.67□□□□□ -0.54
SRP54-207ENST00000555535 ZFRQ96KR1 1074 aaKnown RBP11.67□□□□□ -0.54
SRP54-207ENST00000555535 MFSD10Q14728 455 aa11.66□□□□□ -0.54
SRP54-207ENST00000555535 COL9A1P20849 921 aa11.64□□□□□ -0.55
SRP54-207ENST00000555535 KIAA1468Q9P260 1216 aa11.64□□□□□ -0.55
SRP54-207ENST00000555535 WBP1LQ9NX94 342 aa11.62□□□□□ -0.55
SRP54-207ENST00000555535 EPAS1Q99814 870 aa11.61□□□□□ -0.55
SRP54-207ENST00000555535 FAM98CQ17RN3 349 aaKnown RBP11.6□□□□□ -0.55
SRP54-207ENST00000555535 TSR3Q9UJK0 312 aaKnown RBP11.6□□□□□ -0.55
SRP54-207ENST00000555535 EMILIN3Q9NT22 766 aa11.59□□□□□ -0.55
SRP54-207ENST00000555535 LRCH3Q96II8 777 aa11.58□□□□□ -0.56
SRP54-207ENST00000555535 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.58□□□□□ -0.56
SRP54-207ENST00000555535 TRIM6-TRIM34B2RNG4 842 aa11.56□□□□□ -0.56
SRP54-207ENST00000555535 C6orf132Q5T0Z8 1188 aa11.56□□□□□ -0.56
SRP54-207ENST00000555535 TRAF7Q6Q0C0 670 aa11.55□□□□□ -0.56
SRP54-207ENST00000555535 SEPT9Q9UHD8 586 aaPredicted RBP11.55□□□□□ -0.56
SRP54-207ENST00000555535 GTPBP6O43824 516 aaPredicted RBP11.54□□□□□ -0.56
SRP54-207ENST00000555535 HPS5Q9UPZ3 1129 aa11.54□□□□□ -0.56
SRP54-207ENST00000555535 GFRA3O60609 400 aa11.53□□□□□ -0.56
SRP54-207ENST00000555535 PACS2Q86VP3 889 aa11.49□□□□□ -0.57
SRP54-207ENST00000555535 NRG2O14511 850 aaPredicted RBP11.48□□□□□ -0.57
SRP54-207ENST00000555535 PPP4CP60510 307 aa11.48□□□□□ -0.57
SRP54-207ENST00000555535 V9GY48 417 aaPredicted RBP11.45□□□□□ -0.58
SRP54-207ENST00000555535 CAMK2BQ13554 666 aa11.44□□□□□ -0.58
SRP54-207ENST00000555535 PRKD2Q9BZL6 878 aa11.44□□□□□ -0.58
SRP54-207ENST00000555535 TJAP1Q5JTD0 557 aa11.41□□□□□ -0.58
SRP54-207ENST00000555535 RBM33Q96EV2 1170 aaKnown RBP11.41□□□□□ -0.58
SRP54-207ENST00000555535 LCE2BO14633 110 aa11.4□□□□□ -0.58
SRP54-207ENST00000555535 IL21Q9HBE4 155 aa11.4□□□□□ -0.58
SRP54-207ENST00000555535 DPYSL4O14531 572 aa11.39□□□□□ -0.59
SRP54-207ENST00000555535 EN1Q05925 392 aaPredicted RBP11.38□□□□□ -0.59
SRP54-207ENST00000555535 CERKQ8TCT0 537 aa11.37□□□□□ -0.59
SRP54-207ENST00000555535 MAP3K7O43318 606 aa11.36□□□□□ -0.59
SRP54-207ENST00000555535 DDX12PQ92771 950 aa11.36□□□□□ -0.59
SRP54-207ENST00000555535 TSKSQ9UJT2 592 aa11.36□□□□□ -0.59
SRP54-207ENST00000555535 PPP1R18Q6NYC8 613 aa11.35□□□□□ -0.59
SRP54-207ENST00000555535 NECTIN2Q92692 538 aa11.35□□□□□ -0.59
SRP54-207ENST00000555535 MTRQ99707 1265 aa11.35□□□□□ -0.59
SRP54-207ENST00000555535 SAMD7Q7Z3H4 446 aa11.34□□□□□ -0.59
SRP54-207ENST00000555535 EIF4ENIF1Q9NRA8 985 aaKnown RBP11.34□□□□□ -0.59
SRP54-207ENST00000555535 GGCXP38435 758 aa11.33□□□□□ -0.6
SRP54-207ENST00000555535 HDGFP51858 240 aaKnown RBP11.33□□□□□ -0.6
SRP54-207ENST00000555535 NBR1Q14596 966 aa11.33□□□□□ -0.6
SRP54-207ENST00000555535 CADPS2Q86UW7 1296 aa11.33□□□□□ -0.6
SRP54-207ENST00000555535 ZNF787Q6DD87 383 aa11.32□□□□□ -0.6
SRP54-207ENST00000555535 NBPF26B4DH59 902 aa11.31□□□□□ -0.6
SRP54-207ENST00000555535 PRSS12P56730 875 aa11.31□□□□□ -0.6
SRP54-207ENST00000555535 CDCA7LQ96GN5 454 aa11.31□□□□□ -0.6
SRP54-207ENST00000555535 PDZRN3Q9UPQ7 1066 aa11.3□□□□□ -0.6
SRP54-207ENST00000555535 SPDYE16A6NNV3 312 aaPredicted RBP11.29□□□□□ -0.6
SRP54-207ENST00000555535 TSR1Q2NL82 804 aaKnown RBP11.29□□□□□ -0.6
SRP54-207ENST00000555535 PDIA6Q15084 440 aa11.28□□□□□ -0.6
SRP54-207ENST00000555535 TATDN2Q93075 761 aa11.26□□□□□ -0.61
SRP54-207ENST00000555535 TMUB1Q9BVT8 246 aa11.26□□□□□ -0.61
SRP54-207ENST00000555535 SMAPO00193 183 aa11.24□□□□□ -0.61
SRP54-207ENST00000555535 PNMA3Q9UL41 463 aa11.24□□□□□ -0.61
SRP54-207ENST00000555535 RBM27Q9P2N5 1060 aaKnown RBP11.23□□□□□ -0.61
SRP54-207ENST00000555535 RNF40O75150 1001 aa11.21□□□□□ -0.61
SRP54-207ENST00000555535 SLC4A3P48751 1232 aa11.21□□□□□ -0.61
SRP54-207ENST00000555535 ZNF516Q92618 1163 aa11.21□□□□□ -0.61
SRP54-207ENST00000555535 DCAF8L2P0C7V8 631 aa11.2□□□□□ -0.62
SRP54-207ENST00000555535 APLP1P51693 650 aa11.19□□□□□ -0.62
SRP54-207ENST00000555535 SLF2Q8IX21 1173 aa11.18□□□□□ -0.62
SRP54-207ENST00000555535 ZNF775Q96BV0 537 aaPredicted RBP11.18□□□□□ -0.62
SRP54-207ENST00000555535 PRR14Q9BWN1 585 aa11.18□□□□□ -0.62
SRP54-207ENST00000555535 FAM198AQ9UFP1 575 aa11.18□□□□□ -0.62
SRP54-207ENST00000555535 NUDT18Q6ZVK8 323 aa11.16□□□□□ -0.62
SRP54-207ENST00000555535 NKX2-3Q8TAU0 364 aa11.15□□□□□ -0.62
SRP54-207ENST00000555535 ZPR1O75312 459 aa11.12□□□□□ -0.63
SRP54-207ENST00000555535 DGAT1O75907 488 aa11.12□□□□□ -0.63
SRP54-207ENST00000555535 COPS2P61201 443 aa11.12□□□□□ -0.63
SRP54-207ENST00000555535 PKDCCQ504Y2 493 aa11.12□□□□□ -0.63
SRP54-207ENST00000555535 ARIH1Q9Y4X5 557 aaPredicted RBP11.12□□□□□ -0.63
SRP54-207ENST00000555535 C3orf80F5H4A9 247 aa11.11□□□□□ -0.63
SRP54-207ENST00000555535 GRXCR2A6NFK2 248 aa11.1□□□□□ -0.63
SRP54-207ENST00000555535 SLC19A1P41440 591 aa11.09□□□□□ -0.63
SRP54-207ENST00000555535 PRR20EP86478 221 aa11.08□□□□□ -0.64
SRP54-207ENST00000555535 PRR20CP86479 221 aa11.08□□□□□ -0.64
SRP54-207ENST00000555535 PRR20DP86480 221 aa11.08□□□□□ -0.64
SRP54-207ENST00000555535 PRR20BP86481 221 aa11.08□□□□□ -0.64
SRP54-207ENST00000555535 PRR20AP86496 221 aa11.08□□□□□ -0.64
SRP54-207ENST00000555535 SWT1Q5T5J6 900 aaKnown RBP11.08□□□□□ -0.64
SRP54-207ENST00000555535 E2F4Q16254 413 aa11.07□□□□□ -0.64
SRP54-207ENST00000555535 TTC13Q8NBP0 860 aa11.07□□□□□ -0.64
SRP54-207ENST00000555535 PCDHB3Q9Y5E6 796 aa11.06□□□□□ -0.64
SRP54-207ENST00000555535 PRIM1P49642 420 aaKnown RBP11.05□□□□□ -0.64
SRP54-207ENST00000555535 MYT1Q01538 1121 aa11.05□□□□□ -0.64
SRP54-207ENST00000555535 ZNF598Q86UK7 904 aaKnown RBP11.05□□□□□ -0.64
SRP54-207ENST00000555535 RNF223E7ERA6 249 aa11.04□□□□□ -0.64
SRP54-207ENST00000555535 OSBPP22059 807 aa11.04□□□□□ -0.64
SRP54-207ENST00000555535 TRIM67Q6ZTA4 783 aa11.04□□□□□ -0.64
SRP54-207ENST00000555535 SPRYD7Q5W111 196 aa11.03□□□□□ -0.64
SRP54-207ENST00000555535 ANKLE1Q8NAG6 615 aa11.03□□□□□ -0.64
SRP54-207ENST00000555535 CDHR5Q9HBB8 845 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms