RNA–Protein interactions for RNA: ENST00000555402.1

VRK1-205, Transcript of vaccinia related kinase 1, humanhuman

TSL 3

Gene VRK1, Length 415 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK1-205ENST00000555402 FBXW7Q969H0 707 aa14.6□□□□□ -0.07
VRK1-205ENST00000555402 IRX2Q9BZI1 471 aaPredicted RBP14.59□□□□□ -0.07
VRK1-205ENST00000555402 CADPS2Q86UW7 1296 aa14.58□□□□□ -0.08
VRK1-205ENST00000555402 LAPTM4BQ86VI4 370 aa14.55□□□□□ -0.08
VRK1-205ENST00000555402 BCAMP50895 628 aa14.54□□□□□ -0.08
VRK1-205ENST00000555402 KIAA1468Q9P260 1216 aa14.54□□□□□ -0.08
VRK1-205ENST00000555402 ITGBL1O95965 494 aaPredicted RBP14.53□□□□□ -0.08
VRK1-205ENST00000555402 DCAF8L2P0C7V8 631 aa14.53□□□□□ -0.08
VRK1-205ENST00000555402 SOWAHBA6NEL2 793 aa14.52□□□□□ -0.09
VRK1-205ENST00000555402 ONECUT3O60422 494 aaPredicted RBP14.51□□□□□ -0.09
VRK1-205ENST00000555402 ZFRQ96KR1 1074 aaKnown RBP14.51□□□□□ -0.09
VRK1-205ENST00000555402 C6orf132Q5T0Z8 1188 aa14.5□□□□□ -0.09
VRK1-205ENST00000555402 CAMK2BQ13554 666 aa14.49□□□□□ -0.09
VRK1-205ENST00000555402 EPAS1Q99814 870 aa14.49□□□□□ -0.09
VRK1-205ENST00000555402 NYAP1Q6ZVC0 841 aa14.46□□□□□ -0.09
VRK1-205ENST00000555402 DPYSL4O14531 572 aa14.45□□□□□ -0.1
VRK1-205ENST00000555402 WBP1LQ9NX94 342 aa14.45□□□□□ -0.1
VRK1-205ENST00000555402 SEPT9Q9UHD8 586 aaPredicted RBP14.45□□□□□ -0.1
VRK1-205ENST00000555402 TRIM6-TRIM34B2RNG4 842 aa14.42□□□□□ -0.1
VRK1-205ENST00000555402 RBM33Q96EV2 1170 aaKnown RBP14.41□□□□□ -0.1
VRK1-205ENST00000555402 KCNC4Q03721 635 aa14.4□□□□□ -0.1
VRK1-205ENST00000555402 FAM98CQ17RN3 349 aaKnown RBP14.39□□□□□ -0.11
VRK1-205ENST00000555402 DDX12PQ92771 950 aa14.38□□□□□ -0.11
VRK1-205ENST00000555402 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.36□□□□□ -0.11
VRK1-205ENST00000555402 TSR3Q9UJK0 312 aaKnown RBP14.36□□□□□ -0.11
VRK1-205ENST00000555402 LRCH3Q96II8 777 aa14.34□□□□□ -0.11
VRK1-205ENST00000555402 HPS5Q9UPZ3 1129 aa14.33□□□□□ -0.12
VRK1-205ENST00000555402 EN1Q05925 392 aaPredicted RBP14.3□□□□□ -0.12
VRK1-205ENST00000555402 PACS2Q86VP3 889 aa14.3□□□□□ -0.12
VRK1-205ENST00000555402 TSKSQ9UJT2 592 aa14.3□□□□□ -0.12
VRK1-205ENST00000555402 NBR1Q14596 966 aa14.29□□□□□ -0.12
VRK1-205ENST00000555402 TSR1Q2NL82 804 aaKnown RBP14.28□□□□□ -0.12
VRK1-205ENST00000555402 Q6ZNB5 142 aa14.28□□□□□ -0.12
VRK1-205ENST00000555402 MAP3K7O43318 606 aa14.27□□□□□ -0.13
VRK1-205ENST00000555402 PDIA6Q15084 440 aa14.25□□□□□ -0.13
VRK1-205ENST00000555402 PPP4CP60510 307 aa14.23□□□□□ -0.13
VRK1-205ENST00000555402 SPDYE16A6NNV3 312 aaPredicted RBP14.21□□□□□ -0.13
VRK1-205ENST00000555402 BBXQ8WY36 941 aaPredicted RBP14.2□□□□□ -0.14
VRK1-205ENST00000555402 CDCA7LQ96GN5 454 aa14.2□□□□□ -0.14
VRK1-205ENST00000555402 SMAPO00193 183 aa14.18□□□□□ -0.14
VRK1-205ENST00000555402 PRSS12P56730 875 aa14.18□□□□□ -0.14
VRK1-205ENST00000555402 SAMD7Q7Z3H4 446 aa14.18□□□□□ -0.14
VRK1-205ENST00000555402 TJAP1Q5JTD0 557 aa14.17□□□□□ -0.14
VRK1-205ENST00000555402 FAM198AQ9UFP1 575 aa14.17□□□□□ -0.14
VRK1-205ENST00000555402 LAPTM4AQ15012 233 aa14.16□□□□□ -0.14
VRK1-205ENST00000555402 CERKQ8TCT0 537 aa14.15□□□□□ -0.14
VRK1-205ENST00000555402 PRIM1P49642 420 aaKnown RBP14.13□□□□□ -0.15
VRK1-205ENST00000555402 C3orf80F5H4A9 247 aa14.12□□□□□ -0.15
VRK1-205ENST00000555402 TATDN2Q93075 761 aa14.12□□□□□ -0.15
VRK1-205ENST00000555402 GFRA3O60609 400 aa14.11□□□□□ -0.15
VRK1-205ENST00000555402 PNMA3Q9UL41 463 aa14.11□□□□□ -0.15
VRK1-205ENST00000555402 GRXCR2A6NFK2 248 aa14.1□□□□□ -0.15
VRK1-205ENST00000555402 E2F4Q16254 413 aa14.1□□□□□ -0.15
VRK1-205ENST00000555402 MTRQ99707 1265 aa14.09□□□□□ -0.15
VRK1-205ENST00000555402 IL21Q9HBE4 155 aa14.09□□□□□ -0.15
VRK1-205ENST00000555402 NBPF26B4DH59 902 aa14.08□□□□□ -0.16
VRK1-205ENST00000555402 ARIH1Q9Y4X5 557 aaPredicted RBP14.08□□□□□ -0.16
VRK1-205ENST00000555402 SPRYD3Q8NCJ5 442 aa14.07□□□□□ -0.16
VRK1-205ENST00000555402 PRKD2Q9BZL6 878 aa14.07□□□□□ -0.16
VRK1-205ENST00000555402 LCE2BO14633 110 aa14.06□□□□□ -0.16
VRK1-205ENST00000555402 PPP1R18Q6NYC8 613 aa14.05□□□□□ -0.16
VRK1-205ENST00000555402 TRAF7Q6Q0C0 670 aa14.05□□□□□ -0.16
VRK1-205ENST00000555402 HDGFP51858 240 aaKnown RBP14.04□□□□□ -0.16
VRK1-205ENST00000555402 NUDT18Q6ZVK8 323 aa14.04□□□□□ -0.16
VRK1-205ENST00000555402 OSBPP22059 807 aa14.03□□□□□ -0.16
VRK1-205ENST00000555402 ZNF516Q92618 1163 aa14.03□□□□□ -0.16
VRK1-205ENST00000555402 CDHR5Q9HBB8 845 aa14.03□□□□□ -0.16
VRK1-205ENST00000555402 RNF40O75150 1001 aa14.01□□□□□ -0.17
VRK1-205ENST00000555402 APLP1P51693 650 aa14□□□□□ -0.17
VRK1-205ENST00000555402 EIF4ENIF1Q9NRA8 985 aaKnown RBP14□□□□□ -0.17
VRK1-205ENST00000555402 WDR70Q9NW82 654 aa14□□□□□ -0.17
VRK1-205ENST00000555402 RBM27Q9P2N5 1060 aaKnown RBP14□□□□□ -0.17
VRK1-205ENST00000555402 V9GY48 417 aaPredicted RBP14□□□□□ -0.17
VRK1-205ENST00000555402 NRG2O14511 850 aaPredicted RBP13.99□□□□□ -0.17
VRK1-205ENST00000555402 ZBTB4Q9P1Z0 1013 aaPredicted RBP13.97□□□□□ -0.17
VRK1-205ENST00000555402 TTC13Q8NBP0 860 aa13.94□□□□□ -0.18
VRK1-205ENST00000555402 NKX2-3Q8TAU0 364 aa13.94□□□□□ -0.18
VRK1-205ENST00000555402 SWT1Q5T5J6 900 aaKnown RBP13.92□□□□□ -0.18
VRK1-205ENST00000555402 NECTIN2Q92692 538 aa13.92□□□□□ -0.18
VRK1-205ENST00000555402 NPDC1Q9NQX5 325 aaPredicted RBP13.92□□□□□ -0.18
VRK1-205ENST00000555402 PADI6Q6TGC4 694 aa13.9□□□□□ -0.18
VRK1-205ENST00000555402 SLF2Q8IX21 1173 aa13.9□□□□□ -0.18
VRK1-205ENST00000555402 COPS2P61201 443 aa13.89□□□□□ -0.19
VRK1-205ENST00000555402 GGCXP38435 758 aa13.87□□□□□ -0.19
VRK1-205ENST00000555402 CFAP44Q96MT7 982 aa13.87□□□□□ -0.19
VRK1-205ENST00000555402 PDZRN3Q9UPQ7 1066 aa13.87□□□□□ -0.19
VRK1-205ENST00000555402 PAXIP1Q6ZW49 1069 aaPredicted RBP13.86□□□□□ -0.19
VRK1-205ENST00000555402 EYA1Q99502 592 aa13.84□□□□□ -0.19
VRK1-205ENST00000555402 ZPR1O75312 459 aa13.83□□□□□ -0.2
VRK1-205ENST00000555402 TMUB1Q9BVT8 246 aa13.83□□□□□ -0.2
VRK1-205ENST00000555402 SLC4A3P48751 1232 aa13.82□□□□□ -0.2
VRK1-205ENST00000555402 AMER1Q5JTC6 1135 aaPredicted RBP13.79□□□□□ -0.2
VRK1-205ENST00000555402 ZNF787Q6DD87 383 aa13.78□□□□□ -0.2
VRK1-205ENST00000555402 PRR14Q9BWN1 585 aa13.78□□□□□ -0.2
VRK1-205ENST00000555402 RTN4Q9NQC3 1192 aaKnown RBP13.77□□□□□ -0.21
VRK1-205ENST00000555402 PCDHB3Q9Y5E6 796 aa13.77□□□□□ -0.21
VRK1-205ENST00000555402 BLOC1S3Q6QNY0 202 aa13.73□□□□□ -0.21
VRK1-205ENST00000555402 RNF223E7ERA6 249 aa13.72□□□□□ -0.21
VRK1-205ENST00000555402 SLC19A1P41440 591 aa13.71□□□□□ -0.21
VRK1-205ENST00000555402 MLLT3P42568 568 aaPredicted RBP13.7□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 90.5 ms