RNA–Protein interactions for RNA: ENST00000554776.5

SCFD1-213, Transcript of sec1 family domain containing 1, humanhuman

TSL 5

Gene SCFD1, Length 583 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-213ENST00000554776 PRIM1P49642 420 aaKnown RBP7.58□□□□□ -1.2
SCFD1-213ENST00000554776 PSEN2P49810 448 aa7.57□□□□□ -1.2
SCFD1-213ENST00000554776 KCNK17Q96T54 332 aa7.57□□□□□ -1.2
SCFD1-213ENST00000554776 LSM11P83369 360 aaKnown RBP eCLIP7.56□□□□□ -1.2
SCFD1-213ENST00000554776 RBM33Q96EV2 1170 aaKnown RBP7.56□□□□□ -1.2
SCFD1-213ENST00000554776 MAP3K7O43318 606 aa7.55□□□□□ -1.2
SCFD1-213ENST00000554776 C6orf132Q5T0Z8 1188 aa7.55□□□□□ -1.2
SCFD1-213ENST00000554776 DMRTA1Q5VZB9 504 aa7.55□□□□□ -1.2
SCFD1-213ENST00000554776 KCNH8Q96L42 1107 aa7.55□□□□□ -1.2
SCFD1-213ENST00000554776 TSR1Q2NL82 804 aaKnown RBP7.54□□□□□ -1.2
SCFD1-213ENST00000554776 PPP1R3GB7ZBB8 358 aa7.53□□□□□ -1.2
SCFD1-213ENST00000554776 COL9A1P20849 921 aa7.53□□□□□ -1.2
SCFD1-213ENST00000554776 SMYD5Q6GMV2 418 aa7.53□□□□□ -1.2
SCFD1-213ENST00000554776 TK2O00142 265 aa7.52□□□□□ -1.21
SCFD1-213ENST00000554776 SLC4A5Q9BY07 1137 aa7.52□□□□□ -1.21
SCFD1-213ENST00000554776 ANKRD13DQ6ZTN6 518 aa7.51□□□□□ -1.21
SCFD1-213ENST00000554776 ZBED2Q9BTP6 218 aa7.51□□□□□ -1.21
SCFD1-213ENST00000554776 CDHR5Q9HBB8 845 aa7.51□□□□□ -1.21
SCFD1-213ENST00000554776 ADGRD1Q6QNK2 874 aa7.5□□□□□ -1.21
SCFD1-213ENST00000554776 CERKQ8TCT0 537 aa7.49□□□□□ -1.21
SCFD1-213ENST00000554776 BCANQ96GW7 911 aa7.49□□□□□ -1.21
SCFD1-213ENST00000554776 VPS9D1Q9Y2B5 631 aa7.49□□□□□ -1.21
SCFD1-213ENST00000554776 RBM26Q5T8P6 1007 aaKnown RBP7.48□□□□□ -1.21
SCFD1-213ENST00000554776 SPNS2Q8IVW8 549 aa7.48□□□□□ -1.21
SCFD1-213ENST00000554776 NPDC1Q9NQX5 325 aaPredicted RBP7.48□□□□□ -1.21
SCFD1-213ENST00000554776 HRO43593 1189 aa7.47□□□□□ -1.21
SCFD1-213ENST00000554776 TULP1O00294 542 aaPredicted RBP7.46□□□□□ -1.22
SCFD1-213ENST00000554776 ONECUT3O60422 494 aaPredicted RBP7.46□□□□□ -1.22
SCFD1-213ENST00000554776 PTGDRQ13258 359 aa7.46□□□□□ -1.22
SCFD1-213ENST00000554776 PROX2Q3B8N5 592 aa7.46□□□□□ -1.22
SCFD1-213ENST00000554776 NUTM2FA1L443 756 aa7.45□□□□□ -1.22
SCFD1-213ENST00000554776 TRIM6-TRIM34B2RNG4 842 aa7.45□□□□□ -1.22
SCFD1-213ENST00000554776 PRSS12P56730 875 aa7.45□□□□□ -1.22
SCFD1-213ENST00000554776 RBM27Q9P2N5 1060 aaKnown RBP7.45□□□□□ -1.22
SCFD1-213ENST00000554776 BHMG1C9JSJ3 638 aaPredicted RBP7.44□□□□□ -1.22
SCFD1-213ENST00000554776 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.44□□□□□ -1.22
SCFD1-213ENST00000554776 CDCA7LQ96GN5 454 aa7.44□□□□□ -1.22
SCFD1-213ENST00000554776 RABGEF1Q9UJ41 708 aa7.44□□□□□ -1.22
SCFD1-213ENST00000554776 GPR37O15354 613 aa7.43□□□□□ -1.22
SCFD1-213ENST00000554776 FCHSD2O94868 740 aa7.43□□□□□ -1.22
SCFD1-213ENST00000554776 TSKSQ9UJT2 592 aa7.43□□□□□ -1.22
SCFD1-213ENST00000554776 TTC13Q8NBP0 860 aa7.42□□□□□ -1.22
SCFD1-213ENST00000554776 KIAA1468Q9P260 1216 aa7.42□□□□□ -1.22
SCFD1-213ENST00000554776 FAM198AQ9UFP1 575 aa7.42□□□□□ -1.22
SCFD1-213ENST00000554776 MMRN1Q13201 1228 aa7.41□□□□□ -1.22
SCFD1-213ENST00000554776 PADI6Q6TGC4 694 aa7.41□□□□□ -1.22
SCFD1-213ENST00000554776 GPIHBP1Q8IV16 184 aa7.41□□□□□ -1.22
SCFD1-213ENST00000554776 NBPF3Q9H094 633 aa7.41□□□□□ -1.22
SCFD1-213ENST00000554776 HIC1Q14526 733 aa7.4□□□□□ -1.22
SCFD1-213ENST00000554776 LMOD2Q6P5Q4 547 aa7.4□□□□□ -1.22
SCFD1-213ENST00000554776 PACS2Q86VP3 889 aa7.4□□□□□ -1.22
SCFD1-213ENST00000554776 MYT1LQ9UL68 1186 aa7.4□□□□□ -1.22
SCFD1-213ENST00000554776 LAPTM4BQ86VI4 370 aa7.38□□□□□ -1.23
SCFD1-213ENST00000554776 MRPL50Q8N5N7 158 aaKnown RBP7.38□□□□□ -1.23
SCFD1-213ENST00000554776 STAC3Q96MF2 364 aa7.38□□□□□ -1.23
SCFD1-213ENST00000554776 NBPF26B4DH59 902 aa7.37□□□□□ -1.23
SCFD1-213ENST00000554776 C3orf80F5H4A9 247 aa7.37□□□□□ -1.23
SCFD1-213ENST00000554776 GNPATO15228 680 aa7.37□□□□□ -1.23
SCFD1-213ENST00000554776 TATDN2Q93075 761 aa7.36□□□□□ -1.23
SCFD1-213ENST00000554776 RNF166Q96A37 237 aaPredicted RBP7.36□□□□□ -1.23
SCFD1-213ENST00000554776 SEPT9Q9UHD8 586 aaPredicted RBP7.36□□□□□ -1.23
SCFD1-213ENST00000554776 FECHP22830 423 aa7.35□□□□□ -1.23
SCFD1-213ENST00000554776 FAM98CQ17RN3 349 aaKnown RBP7.35□□□□□ -1.23
SCFD1-213ENST00000554776 NUDT18Q6ZVK8 323 aa7.35□□□□□ -1.23
SCFD1-213ENST00000554776 PNMA3Q9UL41 463 aa7.35□□□□□ -1.23
SCFD1-213ENST00000554776 SMAPO00193 183 aa7.34□□□□□ -1.23
SCFD1-213ENST00000554776 ADGRG1Q9Y653 693 aa7.34□□□□□ -1.23
SCFD1-213ENST00000554776 GOLGA8CPA6NN73 597 aa7.33□□□□□ -1.24
SCFD1-213ENST00000554776 ZFRQ96KR1 1074 aaKnown RBP7.33□□□□□ -1.24
SCFD1-213ENST00000554776 EYA1Q99502 592 aa7.33□□□□□ -1.24
SCFD1-213ENST00000554776 ZC3H15Q8WU90 426 aaKnown RBP7.32□□□□□ -1.24
SCFD1-213ENST00000554776 WNT2BQ93097 391 aa7.32□□□□□ -1.24
SCFD1-213ENST00000554776 FAM161AQ3B820 660 aa7.31□□□□□ -1.24
SCFD1-213ENST00000554776 KCTD12Q96CX2 325 aaKnown RBP7.31□□□□□ -1.24
SCFD1-213ENST00000554776 ZMYND10O75800 440 aa7.3□□□□□ -1.24
SCFD1-213ENST00000554776 MAP2K5Q13163 448 aa7.3□□□□□ -1.24
SCFD1-213ENST00000554776 THSD4Q6ZMP0 1018 aa7.3□□□□□ -1.24
SCFD1-213ENST00000554776 ANKK1Q8NFD2 765 aa7.3□□□□□ -1.24
SCFD1-213ENST00000554776 RBM46Q8TBY0 533 aaKnown RBP7.3□□□□□ -1.24
SCFD1-213ENST00000554776 OATP04181 439 aa7.29□□□□□ -1.24
SCFD1-213ENST00000554776 BARGINQ6ZT62 677 aa7.29□□□□□ -1.24
SCFD1-213ENST00000554776 PXYLP1Q8TE99 480 aa7.29□□□□□ -1.24
SCFD1-213ENST00000554776 SOWAHBA6NEL2 793 aa7.28□□□□□ -1.24
SCFD1-213ENST00000554776 METTL3Q86U44 580 aaKnown RBP7.28□□□□□ -1.24
SCFD1-213ENST00000554776 MINK1Q8N4C8 1332 aaPredicted RBP7.27□□□□□ -1.24
SCFD1-213ENST00000554776 IRF6O14896 467 aa7.27□□□□□ -1.25
SCFD1-213ENST00000554776 DNAJB2P25686 324 aa7.27□□□□□ -1.25
SCFD1-213ENST00000554776 SAMD7Q7Z3H4 446 aa7.27□□□□□ -1.25
SCFD1-213ENST00000554776 LRCH3Q96II8 777 aa7.27□□□□□ -1.25
SCFD1-213ENST00000554776 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.26□□□□□ -1.25
SCFD1-213ENST00000554776 RCCD1A6NED2 376 aa7.26□□□□□ -1.25
SCFD1-213ENST00000554776 BCAMP50895 628 aa7.26□□□□□ -1.25
SCFD1-213ENST00000554776 CDKN2AIPQ9NXV6 580 aaPredicted RBP7.26□□□□□ -1.25
SCFD1-213ENST00000554776 HCSTQ9UBK5 93 aa7.26□□□□□ -1.25
SCFD1-213ENST00000554776 SWT1Q5T5J6 900 aaKnown RBP7.25□□□□□ -1.25
SCFD1-213ENST00000554776 CCDC102AQ96A19 550 aa7.25□□□□□ -1.25
SCFD1-213ENST00000554776 TMEM134Q9H6X4 195 aa7.25□□□□□ -1.25
SCFD1-213ENST00000554776 HDGFP51858 240 aaKnown RBP7.24□□□□□ -1.25
SCFD1-213ENST00000554776 PHOX2BQ99453 314 aa7.24□□□□□ -1.25
SCFD1-213ENST00000554776 PTPN5P54829 565 aa7.23□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 52.3 ms