RNA–Protein interactions for RNA: ENST00000550893.2

SCAF11-214, Transcript of SR-related CTD associated factor 11, humanhuman

TSL 2

Gene SCAF11, Length 507 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF11-214ENST00000550893 EPAS1Q99814 870 aa10.81□□□□□ -0.68
SCAF11-214ENST00000550893 PTPREP23469 700 aa10.8□□□□□ -0.68
SCAF11-214ENST00000550893 FBXW7Q969H0 707 aa10.8□□□□□ -0.68
SCAF11-214ENST00000550893 KCNH8Q96L42 1107 aa10.79□□□□□ -0.68
SCAF11-214ENST00000550893 GRXCR2A6NFK2 248 aa10.78□□□□□ -0.68
SCAF11-214ENST00000550893 NBR1Q14596 966 aa10.78□□□□□ -0.68
SCAF11-214ENST00000550893 RBM33Q96EV2 1170 aaKnown RBP10.77□□□□□ -0.69
SCAF11-214ENST00000550893 MYT1LQ9UL68 1186 aa10.77□□□□□ -0.69
SCAF11-214ENST00000550893 ADGRD1Q6QNK2 874 aa10.76□□□□□ -0.69
SCAF11-214ENST00000550893 TK2O00142 265 aa10.74□□□□□ -0.69
SCAF11-214ENST00000550893 PRIM1P49642 420 aaKnown RBP10.74□□□□□ -0.69
SCAF11-214ENST00000550893 EN1Q05925 392 aaPredicted RBP10.74□□□□□ -0.69
SCAF11-214ENST00000550893 C6orf132Q5T0Z8 1188 aa10.74□□□□□ -0.69
SCAF11-214ENST00000550893 COL9A1P20849 921 aa10.73□□□□□ -0.69
SCAF11-214ENST00000550893 PPP1R3GB7ZBB8 358 aa10.72□□□□□ -0.69
SCAF11-214ENST00000550893 OSBPP22059 807 aa10.72□□□□□ -0.69
SCAF11-214ENST00000550893 MLLT3P42568 568 aaPredicted RBP10.72□□□□□ -0.69
SCAF11-214ENST00000550893 ZBED2Q9BTP6 218 aa10.72□□□□□ -0.69
SCAF11-214ENST00000550893 VPS9D1Q9Y2B5 631 aa10.72□□□□□ -0.69
SCAF11-214ENST00000550893 MAP3K7O43318 606 aa10.71□□□□□ -0.69
SCAF11-214ENST00000550893 SLC4A5Q9BY07 1137 aa10.71□□□□□ -0.69
SCAF11-214ENST00000550893 SEMA3EO15041 775 aa10.7□□□□□ -0.7
SCAF11-214ENST00000550893 HRO43593 1189 aa10.7□□□□□ -0.7
SCAF11-214ENST00000550893 TSR1Q2NL82 804 aaKnown RBP10.7□□□□□ -0.7
SCAF11-214ENST00000550893 PROX2Q3B8N5 592 aa10.67□□□□□ -0.7
SCAF11-214ENST00000550893 CDHR5Q9HBB8 845 aa10.64□□□□□ -0.71
SCAF11-214ENST00000550893 BHMG1C9JSJ3 638 aaPredicted RBP10.63□□□□□ -0.71
SCAF11-214ENST00000550893 TESPA1A2RU30 521 aaPredicted RBP10.62□□□□□ -0.71
SCAF11-214ENST00000550893 STAC3Q96MF2 364 aa10.62□□□□□ -0.71
SCAF11-214ENST00000550893 TRIM6-TRIM34B2RNG4 842 aa10.6□□□□□ -0.71
SCAF11-214ENST00000550893 RABGEF1Q9UJ41 708 aa10.6□□□□□ -0.71
SCAF11-214ENST00000550893 KIAA1468Q9P260 1216 aa10.59□□□□□ -0.71
SCAF11-214ENST00000550893 ONECUT3O60422 494 aaPredicted RBP10.58□□□□□ -0.72
SCAF11-214ENST00000550893 CERKQ8TCT0 537 aa10.58□□□□□ -0.72
SCAF11-214ENST00000550893 NPDC1Q9NQX5 325 aaPredicted RBP10.58□□□□□ -0.72
SCAF11-214ENST00000550893 PRSS12P56730 875 aa10.57□□□□□ -0.72
SCAF11-214ENST00000550893 MRPL50Q8N5N7 158 aaKnown RBP10.57□□□□□ -0.72
SCAF11-214ENST00000550893 CDCA7LQ96GN5 454 aa10.57□□□□□ -0.72
SCAF11-214ENST00000550893 NBPF3Q9H094 633 aa10.57□□□□□ -0.72
SCAF11-214ENST00000550893 TSKSQ9UJT2 592 aa10.57□□□□□ -0.72
SCAF11-214ENST00000550893 FAM198AQ9UFP1 575 aa10.55□□□□□ -0.72
SCAF11-214ENST00000550893 SMYD5Q6GMV2 418 aa10.54□□□□□ -0.72
SCAF11-214ENST00000550893 KCTD12Q96CX2 325 aaKnown RBP10.54□□□□□ -0.72
SCAF11-214ENST00000550893 NUTM2FA1L443 756 aa10.53□□□□□ -0.72
SCAF11-214ENST00000550893 RBM26Q5T8P6 1007 aaKnown RBP10.53□□□□□ -0.72
SCAF11-214ENST00000550893 GOLGA8CPA6NN73 597 aa10.52□□□□□ -0.73
SCAF11-214ENST00000550893 PACS2Q86VP3 889 aa10.52□□□□□ -0.73
SCAF11-214ENST00000550893 SEPT9Q9UHD8 586 aaPredicted RBP10.52□□□□□ -0.73
SCAF11-214ENST00000550893 PTGDRQ13258 359 aa10.51□□□□□ -0.73
SCAF11-214ENST00000550893 C3orf80F5H4A9 247 aa10.5□□□□□ -0.73
SCAF11-214ENST00000550893 LAPTM4BQ86VI4 370 aa10.5□□□□□ -0.73
SCAF11-214ENST00000550893 RBM27Q9P2N5 1060 aaKnown RBP10.5□□□□□ -0.73
SCAF11-214ENST00000550893 PADI6Q6TGC4 694 aa10.49□□□□□ -0.73
SCAF11-214ENST00000550893 TTC13Q8NBP0 860 aa10.49□□□□□ -0.73
SCAF11-214ENST00000550893 WNT2BQ93097 391 aa10.49□□□□□ -0.73
SCAF11-214ENST00000550893 SMAPO00193 183 aa10.48□□□□□ -0.73
SCAF11-214ENST00000550893 FAM98CQ17RN3 349 aaKnown RBP10.47□□□□□ -0.73
SCAF11-214ENST00000550893 TATDN2Q93075 761 aa10.47□□□□□ -0.73
SCAF11-214ENST00000550893 ZFRQ96KR1 1074 aaKnown RBP10.47□□□□□ -0.73
SCAF11-214ENST00000550893 FCHSD2O94868 740 aa10.46□□□□□ -0.73
SCAF11-214ENST00000550893 HCSTQ9UBK5 93 aa10.46□□□□□ -0.73
SCAF11-214ENST00000550893 PNMA3Q9UL41 463 aa10.46□□□□□ -0.73
SCAF11-214ENST00000550893 NBPF26B4DH59 902 aa10.45□□□□□ -0.74
SCAF11-214ENST00000550893 THSD4Q6ZMP0 1018 aa10.45□□□□□ -0.74
SCAF11-214ENST00000550893 NUDT18Q6ZVK8 323 aa10.45□□□□□ -0.74
SCAF11-214ENST00000550893 PTPN5P54829 565 aa10.44□□□□□ -0.74
SCAF11-214ENST00000550893 ANKK1Q8NFD2 765 aa10.44□□□□□ -0.74
SCAF11-214ENST00000550893 UNC13AQ9UPW8 1703 aa10.44□□□□□ -0.74
SCAF11-214ENST00000550893 SLC24A1O60721 1099 aa10.43□□□□□ -0.74
SCAF11-214ENST00000550893 GPR37O15354 613 aa10.42□□□□□ -0.74
SCAF11-214ENST00000550893 PLA2G2EQ9NZK7 142 aa10.42□□□□□ -0.74
SCAF11-214ENST00000550893 BCAMP50895 628 aa10.41□□□□□ -0.74
SCAF11-214ENST00000550893 SOWAHBA6NEL2 793 aa10.4□□□□□ -0.74
SCAF11-214ENST00000550893 TULP1O00294 542 aaPredicted RBP10.4□□□□□ -0.74
SCAF11-214ENST00000550893 HIC1Q14526 733 aa10.4□□□□□ -0.74
SCAF11-214ENST00000550893 GPIHBP1Q8IV16 184 aa10.4□□□□□ -0.74
SCAF11-214ENST00000550893 FAM161AQ3B820 660 aa10.39□□□□□ -0.75
SCAF11-214ENST00000550893 RB1CC1Q8TDY2 1594 aa10.39□□□□□ -0.75
SCAF11-214ENST00000550893 FECHP22830 423 aa10.38□□□□□ -0.75
SCAF11-214ENST00000550893 EYA1Q99502 592 aa10.38□□□□□ -0.75
SCAF11-214ENST00000550893 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.38□□□□□ -0.75
SCAF11-214ENST00000550893 NACADO15069 1562 aa10.37□□□□□ -0.75
SCAF11-214ENST00000550893 GNPATO15228 680 aa10.37□□□□□ -0.75
SCAF11-214ENST00000550893 SAMD7Q7Z3H4 446 aa10.37□□□□□ -0.75
SCAF11-214ENST00000550893 LRCH3Q96II8 777 aa10.37□□□□□ -0.75
SCAF11-214ENST00000550893 ADGRG1Q9Y653 693 aa10.37□□□□□ -0.75
SCAF11-214ENST00000550893 DHX30Q7L2E3 1194 aaKnown RBP eCLIP10.36□□□□□ -0.75
SCAF11-214ENST00000550893 ZCCHC6Q5VYS8 1495 aaKnown RBP10.36□□□□□ -0.75
SCAF11-214ENST00000550893 RBM46Q8TBY0 533 aaKnown RBP10.34□□□□□ -0.75
SCAF11-214ENST00000550893 WBP1LQ9NX94 342 aa10.34□□□□□ -0.75
SCAF11-214ENST00000550893 MYO15BQ96JP2 1530 aa10.33□□□□□ -0.76
SCAF11-214ENST00000550893 HPS5Q9UPZ3 1129 aa10.33□□□□□ -0.76
SCAF11-214ENST00000550893 HDGFP51858 240 aaKnown RBP10.32□□□□□ -0.76
SCAF11-214ENST00000550893 TSR3Q9UJK0 312 aaKnown RBP10.32□□□□□ -0.76
SCAF11-214ENST00000550893 SWT1Q5T5J6 900 aaKnown RBP10.31□□□□□ -0.76
SCAF11-214ENST00000550893 LMOD2Q6P5Q4 547 aa10.31□□□□□ -0.76
SCAF11-214ENST00000550893 PXYLP1Q8TE99 480 aa10.3□□□□□ -0.76
SCAF11-214ENST00000550893 RCCD1A6NED2 376 aa10.29□□□□□ -0.76
SCAF11-214ENST00000550893 OATP04181 439 aa10.29□□□□□ -0.76
SCAF11-214ENST00000550893 DNAJB2P25686 324 aa10.29□□□□□ -0.76
Retrieved 100 of 20,778 RNA–protein pairs in 10.5 ms