RNA–Protein interactions for RNA: ENST00000541963.5

CPSF7-220, Transcript of cleavage and polyadenylation specific factor 7, humanhuman

TSL 4 BASIC

Gene CPSF7, Length 549 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF7-220ENST00000541963 MAP3K7O43318 606 aa9.64□□□□□ -0.87
CPSF7-220ENST00000541963 MAP2K5Q13163 448 aa9.64□□□□□ -0.87
CPSF7-220ENST00000541963 SLAIN1Q8ND83 568 aa9.64□□□□□ -0.87
CPSF7-220ENST00000541963 TRIM66O15016 1216 aa9.63□□□□□ -0.87
CPSF7-220ENST00000541963 TYW1BQ6NUM6 668 aa9.63□□□□□ -0.87
CPSF7-220ENST00000541963 FBXW7Q969H0 707 aa9.63□□□□□ -0.87
CPSF7-220ENST00000541963 GPR37O15354 613 aa9.62□□□□□ -0.87
CPSF7-220ENST00000541963 ERICH6Q7L0X2 663 aa9.62□□□□□ -0.87
CPSF7-220ENST00000541963 ZNF710Q8N1W2 664 aa9.62□□□□□ -0.87
CPSF7-220ENST00000541963 IRF6O14896 467 aa9.61□□□□□ -0.87
CPSF7-220ENST00000541963 EN1Q05925 392 aaPredicted RBP9.61□□□□□ -0.87
CPSF7-220ENST00000541963 RBM33Q96EV2 1170 aaKnown RBP9.61□□□□□ -0.87
CPSF7-220ENST00000541963 LAMC3Q9Y6N6 1575 aa9.61□□□□□ -0.87
CPSF7-220ENST00000541963 PDE4DQ08499 809 aa9.6□□□□□ -0.87
CPSF7-220ENST00000541963 PTGDRQ13258 359 aa9.6□□□□□ -0.87
CPSF7-220ENST00000541963 JPH4Q96JJ6 628 aa9.6□□□□□ -0.87
CPSF7-220ENST00000541963 ZSWIM6Q9HCJ5 1215 aa9.6□□□□□ -0.87
CPSF7-220ENST00000541963 NESP48681 1621 aa9.6□□□□□ -0.87
CPSF7-220ENST00000541963 PDS5BQ9NTI5 1447 aa9.59□□□□□ -0.87
CPSF7-220ENST00000541963 PCDHGA10Q9Y5H3 936 aa9.59□□□□□ -0.87
CPSF7-220ENST00000541963 CADPSQ9ULU8 1353 aa9.59□□□□□ -0.87
CPSF7-220ENST00000541963 TOP2AP11388 1531 aaKnown RBP9.58□□□□□ -0.88
CPSF7-220ENST00000541963 CCDC102AQ96A19 550 aa9.58□□□□□ -0.88
CPSF7-220ENST00000541963 SNPHO15079 494 aa9.57□□□□□ -0.88
CPSF7-220ENST00000541963 PRIM1P49642 420 aaKnown RBP9.57□□□□□ -0.88
CPSF7-220ENST00000541963 ARSIQ5FYB1 569 aa9.56□□□□□ -0.88
CPSF7-220ENST00000541963 ZNF454Q8N9F8 522 aa9.56□□□□□ -0.88
CPSF7-220ENST00000541963 CERKQ8TCT0 537 aa9.56□□□□□ -0.88
CPSF7-220ENST00000541963 KDM4CQ9H3R0 1056 aa9.56□□□□□ -0.88
CPSF7-220ENST00000541963 GPBP1L1Q9HC44 474 aaPredicted RBP9.56□□□□□ -0.88
CPSF7-220ENST00000541963 CUX2O14529 1486 aa9.55□□□□□ -0.88
CPSF7-220ENST00000541963 NUDT7P0C024 238 aa9.55□□□□□ -0.88
CPSF7-220ENST00000541963 ZDHHC16Q969W1 377 aa9.55□□□□□ -0.88
CPSF7-220ENST00000541963 POTEJP0CG39 1038 aa9.54□□□□□ -0.88
CPSF7-220ENST00000541963 FOSBP53539 338 aa9.54□□□□□ -0.88
CPSF7-220ENST00000541963 PSDA5PKW4 1024 aaPredicted RBP9.53□□□□□ -0.88
CPSF7-220ENST00000541963 POTEB2H3BUK9 544 aa9.53□□□□□ -0.88
CPSF7-220ENST00000541963 HOXB3P14651 431 aaPredicted RBP9.53□□□□□ -0.88
CPSF7-220ENST00000541963 FECHP22830 423 aa9.53□□□□□ -0.88
CPSF7-220ENST00000541963 IL27Q8NEV9 243 aa9.53□□□□□ -0.88
CPSF7-220ENST00000541963 KDM4FA0A1W2PPD8 638 aa9.52□□□□□ -0.89
CPSF7-220ENST00000541963 TTLL12Q14166 644 aaPredicted RBP9.52□□□□□ -0.89
CPSF7-220ENST00000541963 AMHR2Q16671 573 aa9.52□□□□□ -0.89
CPSF7-220ENST00000541963 CDHR5Q9HBB8 845 aa9.52□□□□□ -0.89
CPSF7-220ENST00000541963 TSR1Q2NL82 804 aaKnown RBP9.51□□□□□ -0.89
CPSF7-220ENST00000541963 C6orf132Q5T0Z8 1188 aa9.51□□□□□ -0.89
CPSF7-220ENST00000541963 PPP4R3BQ5MIZ7 849 aa9.5□□□□□ -0.89
CPSF7-220ENST00000541963 GPR153Q6NV75 609 aa9.5□□□□□ -0.89
CPSF7-220ENST00000541963 KHSRPQ92945 711 aaKnown RBP eCLIP9.5□□□□□ -0.89
CPSF7-220ENST00000541963 NPDC1Q9NQX5 325 aaPredicted RBP9.5□□□□□ -0.89
CPSF7-220ENST00000541963 CFTRP13569 1480 aa9.49□□□□□ -0.89
CPSF7-220ENST00000541963 DDRGK1Q96HY6 314 aa9.49□□□□□ -0.89
CPSF7-220ENST00000541963 CCDC88BA6NC98 1476 aa9.48□□□□□ -0.89
CPSF7-220ENST00000541963 OATP04181 439 aa9.48□□□□□ -0.89
CPSF7-220ENST00000541963 KIF21AQ7Z4S6 1674 aa9.48□□□□□ -0.89
CPSF7-220ENST00000541963 PARP9Q8IXQ6 854 aa9.46□□□□□ -0.9
CPSF7-220ENST00000541963 LHX6Q9UPM6 363 aa9.46□□□□□ -0.9
CPSF7-220ENST00000541963 FANCD2Q9BXW9 1451 aa9.46□□□□□ -0.9
CPSF7-220ENST00000541963 CEP164Q9UPV0 1460 aa9.46□□□□□ -0.9
CPSF7-220ENST00000541963 SUPT5HO00267 1087 aaKnown RBP9.45□□□□□ -0.9
CPSF7-220ENST00000541963 CLCN1P35523 988 aa9.45□□□□□ -0.9
CPSF7-220ENST00000541963 ADAM33Q9BZ11 813 aa9.45□□□□□ -0.9
CPSF7-220ENST00000541963 MRC2Q9UBG0 1479 aa9.45□□□□□ -0.9
CPSF7-220ENST00000541963 THOC2Q8NI27 1593 aaKnown RBP9.45□□□□□ -0.9
CPSF7-220ENST00000541963 KCNH8Q96L42 1107 aa9.44□□□□□ -0.9
CPSF7-220ENST00000541963 RBM27Q9P2N5 1060 aaKnown RBP9.44□□□□□ -0.9
CPSF7-220ENST00000541963 PADI6Q6TGC4 694 aa9.43□□□□□ -0.9
CPSF7-220ENST00000541963 C14orf37Q86TY3 774 aa9.43□□□□□ -0.9
CPSF7-220ENST00000541963 FAM117AQ9C073 453 aa9.43□□□□□ -0.9
CPSF7-220ENST00000541963 HOXB1P14653 301 aaPredicted RBP9.42□□□□□ -0.9
CPSF7-220ENST00000541963 PTPREP23469 700 aa9.42□□□□□ -0.9
CPSF7-220ENST00000541963 PRSS12P56730 875 aa9.42□□□□□ -0.9
CPSF7-220ENST00000541963 GIGYF2Q6Y7W6 1299 aaKnown RBP9.41□□□□□ -0.9
CPSF7-220ENST00000541963 RBM46Q8TBY0 533 aaKnown RBP9.41□□□□□ -0.9
CPSF7-220ENST00000541963 GPCPD1Q9NPB8 672 aa9.41□□□□□ -0.9
CPSF7-220ENST00000541963 MDM2Q00987 491 aaPredicted RBP9.4□□□□□ -0.9
CPSF7-220ENST00000541963 CDCA7LQ96GN5 454 aa9.4□□□□□ -0.9
CPSF7-220ENST00000541963 BCL2L12Q9HB09 334 aa9.4□□□□□ -0.9
CPSF7-220ENST00000541963 TIMELESSQ9UNS1 1208 aa9.4□□□□□ -0.9
CPSF7-220ENST00000541963 PRDM2Q13029 1718 aa9.39□□□□□ -0.91
CPSF7-220ENST00000541963 WDR62O43379 1518 aa9.39□□□□□ -0.91
CPSF7-220ENST00000541963 METTL3Q86U44 580 aaKnown RBP9.38□□□□□ -0.91
CPSF7-220ENST00000541963 ADGRG1Q9Y653 693 aa9.38□□□□□ -0.91
CPSF7-220ENST00000541963 FAM161AQ3B820 660 aa9.37□□□□□ -0.91
CPSF7-220ENST00000541963 PPP1R3GB7ZBB8 358 aa9.36□□□□□ -0.91
CPSF7-220ENST00000541963 SSTR3P32745 418 aaPredicted RBP9.36□□□□□ -0.91
CPSF7-220ENST00000541963 PACS2Q86VP3 889 aa9.36□□□□□ -0.91
CPSF7-220ENST00000541963 TTC13Q8NBP0 860 aa9.36□□□□□ -0.91
CPSF7-220ENST00000541963 PXYLP1Q8TE99 480 aa9.36□□□□□ -0.91
CPSF7-220ENST00000541963 ABCC8Q09428 1581 aa9.36□□□□□ -0.91
CPSF7-220ENST00000541963 PLEKHG3A1L390 1219 aa9.34□□□□□ -0.91
CPSF7-220ENST00000541963 RSPH6AQ9H0K4 717 aa9.34□□□□□ -0.91
CPSF7-220ENST00000541963 ATP1B4Q9UN42 357 aaPredicted RBP9.34□□□□□ -0.91
CPSF7-220ENST00000541963 URB2Q14146 1524 aaKnown RBP9.33□□□□□ -0.92
CPSF7-220ENST00000541963 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP9.33□□□□□ -0.92
CPSF7-220ENST00000541963 NBPF26B4DH59 902 aa9.33□□□□□ -0.92
CPSF7-220ENST00000541963 MS4A1P11836 297 aa9.33□□□□□ -0.92
CPSF7-220ENST00000541963 COL9A1P20849 921 aa9.33□□□□□ -0.92
CPSF7-220ENST00000541963 OTUD5Q96G74 571 aa9.33□□□□□ -0.92
CPSF7-220ENST00000541963 PCMTD1Q96MG8 357 aaPredicted RBP9.33□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 112.7 ms