RNA–Protein interactions for RNA: ENST00000540975.5

YBX3-210, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 677 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-210ENST00000540975 C6orf132Q5T0Z8 1188 aa15.05■□□□□ -0
YBX3-210ENST00000540975 PTPREP23469 700 aa15.04■□□□□ -0
YBX3-210ENST00000540975 KRTAP3-3Q9BYR6 98 aa15.04■□□□□ -0
YBX3-210ENST00000540975 KRTAP3-2Q9BYR7 98 aa15.04■□□□□ -0
YBX3-210ENST00000540975 MAP3K7O43318 606 aa15.03■□□□□ -0
YBX3-210ENST00000540975 KCNK17Q96T54 332 aa15.03■□□□□ -0
YBX3-210ENST00000540975 TSR1Q2NL82 804 aaKnown RBP15□□□□□ -0.01
YBX3-210ENST00000540975 KCNH8Q96L42 1107 aa14.99□□□□□ -0.01
YBX3-210ENST00000540975 DMRTA1Q5VZB9 504 aa14.98□□□□□ -0.01
YBX3-210ENST00000540975 RBM26Q5T8P6 1007 aaKnown RBP14.97□□□□□ -0.01
YBX3-210ENST00000540975 COL9A1P20849 921 aa14.96□□□□□ -0.01
YBX3-210ENST00000540975 LSM11P83369 360 aaKnown RBP eCLIP14.96□□□□□ -0.015e-6■■■■□ 19.4
YBX3-210ENST00000540975 BCANQ96GW7 911 aa14.95□□□□□ -0.02
YBX3-210ENST00000540975 TULP1O00294 542 aaPredicted RBP14.94□□□□□ -0.02
YBX3-210ENST00000540975 ANKRD13DQ6ZTN6 518 aa14.94□□□□□ -0.02
YBX3-210ENST00000540975 PPP1R3GB7ZBB8 358 aa14.93□□□□□ -0.02
YBX3-210ENST00000540975 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.93□□□□□ -0.02
YBX3-210ENST00000540975 CDHR5Q9HBB8 845 aa14.93□□□□□ -0.02
YBX3-210ENST00000540975 NUTM2FA1L443 756 aa14.91□□□□□ -0.02
YBX3-210ENST00000540975 ZBED2Q9BTP6 218 aa14.91□□□□□ -0.02
YBX3-210ENST00000540975 NPDC1Q9NQX5 325 aaPredicted RBP14.91□□□□□ -0.02
YBX3-210ENST00000540975 SLC4A5Q9BY07 1137 aa14.9□□□□□ -0.02
YBX3-210ENST00000540975 CERKQ8TCT0 537 aa14.89□□□□□ -0.03
YBX3-210ENST00000540975 TK2O00142 265 aa14.88□□□□□ -0.03
YBX3-210ENST00000540975 PTGDRQ13258 359 aa14.86□□□□□ -0.03
YBX3-210ENST00000540975 VPS9D1Q9Y2B5 631 aa14.86□□□□□ -0.03
YBX3-210ENST00000540975 ADGRD1Q6QNK2 874 aa14.85□□□□□ -0.03
YBX3-210ENST00000540975 PROX2Q3B8N5 592 aa14.84□□□□□ -0.03
YBX3-210ENST00000540975 PRSS12P56730 875 aa14.83□□□□□ -0.04
YBX3-210ENST00000540975 LMOD2Q6P5Q4 547 aa14.83□□□□□ -0.04
YBX3-210ENST00000540975 CDCA7LQ96GN5 454 aa14.82□□□□□ -0.04
YBX3-210ENST00000540975 ONECUT3O60422 494 aaPredicted RBP14.81□□□□□ -0.04
YBX3-210ENST00000540975 FCHSD2O94868 740 aa14.81□□□□□ -0.04
YBX3-210ENST00000540975 GPIHBP1Q8IV16 184 aa14.8□□□□□ -0.04
YBX3-210ENST00000540975 TRIM6-TRIM34B2RNG4 842 aa14.79□□□□□ -0.04
YBX3-210ENST00000540975 HRO43593 1189 aa14.79□□□□□ -0.04
YBX3-210ENST00000540975 KIAA1468Q9P260 1216 aa14.78□□□□□ -0.04
YBX3-210ENST00000540975 TSKSQ9UJT2 592 aa14.78□□□□□ -0.04
YBX3-210ENST00000540975 BHMG1C9JSJ3 638 aaPredicted RBP14.77□□□□□ -0.05
YBX3-210ENST00000540975 SPNS2Q8IVW8 549 aa14.77□□□□□ -0.05
YBX3-210ENST00000540975 FAM198AQ9UFP1 575 aa14.77□□□□□ -0.05
YBX3-210ENST00000540975 RABGEF1Q9UJ41 708 aa14.77□□□□□ -0.05
YBX3-210ENST00000540975 GPR37O15354 613 aa14.76□□□□□ -0.05
YBX3-210ENST00000540975 RBM27Q9P2N5 1060 aaKnown RBP14.76□□□□□ -0.05
YBX3-210ENST00000540975 HIC1Q14526 733 aa14.75□□□□□ -0.05
YBX3-210ENST00000540975 PADI6Q6TGC4 694 aa14.74□□□□□ -0.05
YBX3-210ENST00000540975 PACS2Q86VP3 889 aa14.74□□□□□ -0.05
YBX3-210ENST00000540975 TTC13Q8NBP0 860 aa14.74□□□□□ -0.05
YBX3-210ENST00000540975 GNPATO15228 680 aa14.72□□□□□ -0.05
YBX3-210ENST00000540975 FECHP22830 423 aa14.7□□□□□ -0.06
YBX3-210ENST00000540975 STAC3Q96MF2 364 aa14.7□□□□□ -0.06
YBX3-210ENST00000540975 NBPF3Q9H094 633 aa14.68□□□□□ -0.06
YBX3-210ENST00000540975 C3orf80F5H4A9 247 aa14.67□□□□□ -0.06
YBX3-210ENST00000540975 ZC3H15Q8WU90 426 aaKnown RBP14.67□□□□□ -0.06
YBX3-210ENST00000540975 TATDN2Q93075 761 aa14.67□□□□□ -0.06
YBX3-210ENST00000540975 MRPL50Q8N5N7 158 aaKnown RBP14.66□□□□□ -0.06
YBX3-210ENST00000540975 NUDT18Q6ZVK8 323 aa14.64□□□□□ -0.07
YBX3-210ENST00000540975 SEPT9Q9UHD8 586 aaPredicted RBP14.64□□□□□ -0.07
YBX3-210ENST00000540975 PNMA3Q9UL41 463 aa14.64□□□□□ -0.07
YBX3-210ENST00000540975 MYT1LQ9UL68 1186 aa14.64□□□□□ -0.07
YBX3-210ENST00000540975 NBPF26B4DH59 902 aa14.63□□□□□ -0.07
YBX3-210ENST00000540975 SMAPO00193 183 aa14.63□□□□□ -0.07
YBX3-210ENST00000540975 LAPTM4BQ86VI4 370 aa14.63□□□□□ -0.07
YBX3-210ENST00000540975 ZMYND10O75800 440 aa14.61□□□□□ -0.07
YBX3-210ENST00000540975 FAM161AQ3B820 660 aa14.61□□□□□ -0.07
YBX3-210ENST00000540975 EYA1Q99502 592 aa14.61□□□□□ -0.07
YBX3-210ENST00000540975 ADGRG1Q9Y653 693 aa14.61□□□□□ -0.07
YBX3-210ENST00000540975 MMRN1Q13201 1228 aa14.6□□□□□ -0.07
YBX3-210ENST00000540975 FAM98CQ17RN3 349 aaKnown RBP14.59□□□□□ -0.07
YBX3-210ENST00000540975 BARGINQ6ZT62 677 aa14.58□□□□□ -0.08
YBX3-210ENST00000540975 GOLGA8CPA6NN73 597 aa14.57□□□□□ -0.08
YBX3-210ENST00000540975 OATP04181 439 aa14.56□□□□□ -0.08
YBX3-210ENST00000540975 RBM46Q8TBY0 533 aaKnown RBP14.56□□□□□ -0.08
YBX3-210ENST00000540975 ZFRQ96KR1 1074 aaKnown RBP14.56□□□□□ -0.08
YBX3-210ENST00000540975 MINK1Q8N4C8 1332 aaPredicted RBP14.56□□□□□ -0.08
YBX3-210ENST00000540975 MAP2K5Q13163 448 aa14.55□□□□□ -0.08
YBX3-210ENST00000540975 IRF6O14896 467 aa14.54□□□□□ -0.08
YBX3-210ENST00000540975 KRI1Q8N9T8 703 aaKnown RBP14.54□□□□□ -0.08
YBX3-210ENST00000540975 PXYLP1Q8TE99 480 aa14.53□□□□□ -0.08
YBX3-210ENST00000540975 WNT2BQ93097 391 aa14.52□□□□□ -0.09
YBX3-210ENST00000540975 RNF166Q96A37 237 aaPredicted RBP14.52□□□□□ -0.09
YBX3-210ENST00000540975 KCTD12Q96CX2 325 aaKnown RBP14.52□□□□□ -0.09
YBX3-210ENST00000540975 METTL3Q86U44 580 aaKnown RBP14.51□□□□□ -0.09
YBX3-210ENST00000540975 PLSCR2Q9NRY7 297 aa14.5□□□□□ -0.09
YBX3-210ENST00000540975 RCCD1A6NED2 376 aa14.48□□□□□ -0.09
YBX3-210ENST00000540975 ANKK1Q8NFD2 765 aa14.48□□□□□ -0.09
YBX3-210ENST00000540975 HDGFP51858 240 aaKnown RBP14.47□□□□□ -0.09
YBX3-210ENST00000540975 PHOX2BQ99453 314 aa14.47□□□□□ -0.09
YBX3-210ENST00000540975 SAMD7Q7Z3H4 446 aa14.46□□□□□ -0.09
YBX3-210ENST00000540975 SOWAHBA6NEL2 793 aa14.45□□□□□ -0.1
YBX3-210ENST00000540975 DNAJB2P25686 324 aa14.45□□□□□ -0.1
YBX3-210ENST00000540975 THSD4Q6ZMP0 1018 aa14.45□□□□□ -0.1
YBX3-210ENST00000540975 CCDC102AQ96A19 550 aa14.45□□□□□ -0.1
YBX3-210ENST00000540975 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP14.44□□□□□ -0.1
YBX3-210ENST00000540975 LRCH3Q96II8 777 aa14.43□□□□□ -0.1
YBX3-210ENST00000540975 CDKN2AIPQ9NXV6 580 aaPredicted RBP14.43□□□□□ -0.1
YBX3-210ENST00000540975 BCAMP50895 628 aa14.42□□□□□ -0.1
YBX3-210ENST00000540975 SWT1Q5T5J6 900 aaKnown RBP14.42□□□□□ -0.1
YBX3-210ENST00000540975 TMEM134Q9H6X4 195 aa14.42□□□□□ -0.1
YBX3-210ENST00000540975 PTPN5P54829 565 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms