RNA–Protein interactions for RNA: ENST00000521216.5

SKP1-208, Transcript of S-phase kinase associated protein 1, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SKP1, Length 899 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKP1-208ENST00000521216 EMP3P54852 163 aa11.51□□□□□ -0.57
SKP1-208ENST00000521216 BARGINQ6ZT62 677 aa11.51□□□□□ -0.57
SKP1-208ENST00000521216 GPR37O15354 613 aa11.5□□□□□ -0.57
SKP1-208ENST00000521216 PTGDRQ13258 359 aa11.5□□□□□ -0.57
SKP1-208ENST00000521216 GNPATO15228 680 aa11.49□□□□□ -0.57
SKP1-208ENST00000521216 HIC1Q14526 733 aa11.49□□□□□ -0.57
SKP1-208ENST00000521216 VARS2Q5ST30 1063 aaKnown RBP11.49□□□□□ -0.57
SKP1-208ENST00000521216 FAM205CA6NFA0 338 aa11.46□□□□□ -0.57
SKP1-208ENST00000521216 FECHP22830 423 aa11.46□□□□□ -0.57
SKP1-208ENST00000521216 NPDC1Q9NQX5 325 aaPredicted RBP11.46□□□□□ -0.57
SKP1-208ENST00000521216 PTPREP23469 700 aa11.45□□□□□ -0.58
SKP1-208ENST00000521216 BCL2L12Q9HB09 334 aa11.45□□□□□ -0.58
SKP1-208ENST00000521216 KCNK17Q96T54 332 aa11.43□□□□□ -0.58
SKP1-208ENST00000521216 CERKQ8TCT0 537 aa11.42□□□□□ -0.58
SKP1-208ENST00000521216 KCNH8Q96L42 1107 aa11.42□□□□□ -0.58
SKP1-208ENST00000521216 COL9A1P20849 921 aa11.41□□□□□ -0.58
SKP1-208ENST00000521216 MAP2K5Q13163 448 aa11.41□□□□□ -0.58
SKP1-208ENST00000521216 AK7Q96M32 723 aa11.41□□□□□ -0.58
SKP1-208ENST00000521216 MINK1Q8N4C8 1332 aaPredicted RBP11.4□□□□□ -0.58
SKP1-208ENST00000521216 IRF6O14896 467 aa11.38□□□□□ -0.59
SKP1-208ENST00000521216 PRSS12P56730 875 aa11.38□□□□□ -0.59
SKP1-208ENST00000521216 PADI6Q6TGC4 694 aa11.38□□□□□ -0.59
SKP1-208ENST00000521216 AXIN2Q9Y2T1 843 aa11.38□□□□□ -0.59
SKP1-208ENST00000521216 PPP1R3GB7ZBB8 358 aa11.37□□□□□ -0.59
SKP1-208ENST00000521216 PSEN2P49810 448 aa11.37□□□□□ -0.59
SKP1-208ENST00000521216 LCE2DQ5TA82 110 aaPredicted RBP11.37□□□□□ -0.59
SKP1-208ENST00000521216 CCDC102AQ96A19 550 aa11.37□□□□□ -0.59
SKP1-208ENST00000521216 CDCA7LQ96GN5 454 aa11.37□□□□□ -0.59
SKP1-208ENST00000521216 HS3ST6Q96QI5 342 aa11.37□□□□□ -0.59
SKP1-208ENST00000521216 FAM161AQ3B820 660 aa11.36□□□□□ -0.59
SKP1-208ENST00000521216 ARHGAP33O14559 1287 aa11.35□□□□□ -0.59
SKP1-208ENST00000521216 ZNF687Q8N1G0 1237 aa11.34□□□□□ -0.59
SKP1-208ENST00000521216 POTEB3A0JP26 581 aa11.33□□□□□ -0.6
SKP1-208ENST00000521216 TRIM66O15016 1216 aa11.33□□□□□ -0.6
SKP1-208ENST00000521216 NEUROD2Q15784 382 aa11.33□□□□□ -0.6
SKP1-208ENST00000521216 POTEBQ6S5H4 581 aa11.33□□□□□ -0.6
SKP1-208ENST00000521216 PROX2Q3B8N5 592 aa11.32□□□□□ -0.6
SKP1-208ENST00000521216 POTEEQ6S8J3 1075 aa11.31□□□□□ -0.6
SKP1-208ENST00000521216 RBM27Q9P2N5 1060 aaKnown RBP11.31□□□□□ -0.6
SKP1-208ENST00000521216 TSKSQ9UJT2 592 aa11.3□□□□□ -0.6
SKP1-208ENST00000521216 PBX2P40425 430 aa11.29□□□□□ -0.6
SKP1-208ENST00000521216 DMRTA1Q5VZB9 504 aa11.29□□□□□ -0.6
SKP1-208ENST00000521216 PACS2Q86VP3 889 aa11.29□□□□□ -0.6
SKP1-208ENST00000521216 FAM198AQ9UFP1 575 aa11.29□□□□□ -0.6
SKP1-208ENST00000521216 TRIM6-TRIM34B2RNG4 842 aa11.28□□□□□ -0.6
SKP1-208ENST00000521216 OATP04181 439 aa11.28□□□□□ -0.6
SKP1-208ENST00000521216 BRPF1P55201 1214 aaPredicted RBP11.28□□□□□ -0.6
SKP1-208ENST00000521216 PDE4DQ08499 809 aa11.28□□□□□ -0.6
SKP1-208ENST00000521216 TTC13Q8NBP0 860 aa11.28□□□□□ -0.6
SKP1-208ENST00000521216 ZBED2Q9BTP6 218 aa11.28□□□□□ -0.6
SKP1-208ENST00000521216 ADGRG1Q9Y653 693 aa11.28□□□□□ -0.6
SKP1-208ENST00000521216 NUDT18Q6ZVK8 323 aa11.26□□□□□ -0.61
SKP1-208ENST00000521216 RBM46Q8TBY0 533 aaKnown RBP11.26□□□□□ -0.61
SKP1-208ENST00000521216 KIAA1468Q9P260 1216 aa11.26□□□□□ -0.61
SKP1-208ENST00000521216 PNMA3Q9UL41 463 aa11.26□□□□□ -0.61
SKP1-208ENST00000521216 TTLL12Q14166 644 aaPredicted RBP11.25□□□□□ -0.61
SKP1-208ENST00000521216 METTL3Q86U44 580 aaKnown RBP11.25□□□□□ -0.61
SKP1-208ENST00000521216 GPBP1L1Q9HC44 474 aaPredicted RBP11.25□□□□□ -0.61
SKP1-208ENST00000521216 NBPF26B4DH59 902 aa11.24□□□□□ -0.61
SKP1-208ENST00000521216 SMAPO00193 183 aa11.24□□□□□ -0.61
SKP1-208ENST00000521216 NLRP7Q8WX94 980 aa11.24□□□□□ -0.61
SKP1-208ENST00000521216 TATDN2Q93075 761 aa11.24□□□□□ -0.61
SKP1-208ENST00000521216 PHOX2BQ99453 314 aa11.23□□□□□ -0.61
SKP1-208ENST00000521216 C3orf80F5H4A9 247 aa11.22□□□□□ -0.61
SKP1-208ENST00000521216 MDM2Q00987 491 aaPredicted RBP11.22□□□□□ -0.61
SKP1-208ENST00000521216 AMHR2Q16671 573 aa11.22□□□□□ -0.61
SKP1-208ENST00000521216 PXYLP1Q8TE99 480 aa11.22□□□□□ -0.61
SKP1-208ENST00000521216 ANKRD13DQ6ZTN6 518 aa11.21□□□□□ -0.61
SKP1-208ENST00000521216 VPS9D1Q9Y2B5 631 aa11.21□□□□□ -0.61
SKP1-208ENST00000521216 ONECUT3O60422 494 aaPredicted RBP11.2□□□□□ -0.62
SKP1-208ENST00000521216 KDM4CQ9H3R0 1056 aa11.2□□□□□ -0.62
SKP1-208ENST00000521216 LSM11P83369 360 aaKnown RBP eCLIP11.19□□□□□ -0.62
SKP1-208ENST00000521216 PARP9Q8IXQ6 854 aa11.19□□□□□ -0.62
SKP1-208ENST00000521216 EYA1Q99502 592 aa11.19□□□□□ -0.62
SKP1-208ENST00000521216 SEPT9Q9UHD8 586 aaPredicted RBP11.19□□□□□ -0.62
SKP1-208ENST00000521216 RABGEF1Q9UJ41 708 aa11.19□□□□□ -0.62
SKP1-208ENST00000521216 RCCD1A6NED2 376 aa11.18□□□□□ -0.62
SKP1-208ENST00000521216 CLCN1P35523 988 aa11.18□□□□□ -0.62
SKP1-208ENST00000521216 SLC4A5Q9BY07 1137 aa11.18□□□□□ -0.62
SKP1-208ENST00000521216 ADGRD1Q6QNK2 874 aa11.16□□□□□ -0.62
SKP1-208ENST00000521216 POTEGQ6S5H5 508 aa11.16□□□□□ -0.62
SKP1-208ENST00000521216 GPCPD1Q9NPB8 672 aa11.16□□□□□ -0.62
SKP1-208ENST00000521216 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.15□□□□□ -0.62
SKP1-208ENST00000521216 GIGYF2Q6Y7W6 1299 aaKnown RBP11.15□□□□□ -0.62
SKP1-208ENST00000521216 STAC3Q96MF2 364 aa11.15□□□□□ -0.62
SKP1-208ENST00000521216 REPIN1Q9BWE0 567 aaKnown RBP11.15□□□□□ -0.62
SKP1-208ENST00000521216 POTEMA6NI47 508 aa11.14□□□□□ -0.63
SKP1-208ENST00000521216 TK2O00142 265 aa11.14□□□□□ -0.63
SKP1-208ENST00000521216 DNAJB2P25686 324 aa11.14□□□□□ -0.63
SKP1-208ENST00000521216 NBPF3Q9H094 633 aa11.14□□□□□ -0.63
SKP1-208ENST00000521216 IL27Q8NEV9 243 aa11.13□□□□□ -0.63
SKP1-208ENST00000521216 MRPL50Q8N5N7 158 aaKnown RBP11.12□□□□□ -0.63
SKP1-208ENST00000521216 HDGFP51858 240 aaKnown RBP11.11□□□□□ -0.63
SKP1-208ENST00000521216 SSTR3P32745 418 aaPredicted RBP11.1□□□□□ -0.63
SKP1-208ENST00000521216 FAM98CQ17RN3 349 aaKnown RBP11.1□□□□□ -0.63
SKP1-208ENST00000521216 DAXXQ9UER7 740 aaPredicted RBP11.1□□□□□ -0.63
SKP1-208ENST00000521216 MS4A1P11836 297 aa11.09□□□□□ -0.63
SKP1-208ENST00000521216 CDAN1Q8IWY9 1227 aa11.09□□□□□ -0.63
SKP1-208ENST00000521216 TMUB1Q9BVT8 246 aa11.09□□□□□ -0.63
SKP1-208ENST00000521216 FAM117AQ9C073 453 aa11.09□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 48 ms