RNA–Protein interactions for RNA: ENST00000515289.2

NPHP3-211, Transcript of nephrocystin 3, humanhuman

TSL 3

Gene NPHP3, Length 556 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-211ENST00000515289 PDE4CQ08493 712 aa11.12□□□□□ -0.63
NPHP3-211ENST00000515289 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.12□□□□□ -0.63
NPHP3-211ENST00000515289 TRPC6Q9Y210 931 aa11.12□□□□□ -0.63
NPHP3-211ENST00000515289 ZNF330Q9Y3S2 320 aaPredicted RBP11.12□□□□□ -0.63
NPHP3-211ENST00000515289 C2orf72A6NCS6 295 aa11.1□□□□□ -0.63
NPHP3-211ENST00000515289 MDM2Q00987 491 aaPredicted RBP11.1□□□□□ -0.63
NPHP3-211ENST00000515289 BEGAINQ9BUH8 593 aa11.1□□□□□ -0.63
NPHP3-211ENST00000515289 PATL2C9JE40 543 aaKnown RBP11.09□□□□□ -0.63
NPHP3-211ENST00000515289 TIE1P35590 1138 aa11.09□□□□□ -0.63
NPHP3-211ENST00000515289 ATP1B4Q9UN42 357 aaPredicted RBP11.09□□□□□ -0.63
NPHP3-211ENST00000515289 DPY19L2Q6NUT2 758 aa11.08□□□□□ -0.64
NPHP3-211ENST00000515289 UPF1Q92900 1129 aaKnown RBP eCLIP11.07□□□□□ -0.64
NPHP3-211ENST00000515289 POLR3EQ9NVU0 708 aa11.07□□□□□ -0.64
NPHP3-211ENST00000515289 TTLL13PA6NNM8 815 aa11.06□□□□□ -0.64
NPHP3-211ENST00000515289 TBC1D12O60347 775 aa11.06□□□□□ -0.64
NPHP3-211ENST00000515289 MS4A3Q96HJ5 214 aa11.06□□□□□ -0.64
NPHP3-211ENST00000515289 TMEM121BQ9BXQ6 578 aaPredicted RBP11.06□□□□□ -0.64
NPHP3-211ENST00000515289 CD44P16070 742 aaKnown RBP11.05□□□□□ -0.64
NPHP3-211ENST00000515289 MYSM1Q5VVJ2 828 aa11.05□□□□□ -0.64
NPHP3-211ENST00000515289 SNRKQ9NRH2 765 aa11.05□□□□□ -0.64
NPHP3-211ENST00000515289 FAM217BQ9NTX9 383 aaPredicted RBP11.05□□□□□ -0.64
NPHP3-211ENST00000515289 ACIN1Q9UKV3 1341 aaKnown RBP11.05□□□□□ -0.64
NPHP3-211ENST00000515289 RFC5P40937 340 aa11.04□□□□□ -0.64
NPHP3-211ENST00000515289 FBXW7Q969H0 707 aa11.04□□□□□ -0.64
NPHP3-211ENST00000515289 PHOX2BQ99453 314 aa11.04□□□□□ -0.64
NPHP3-211ENST00000515289 CLK2P49760 499 aaKnown RBP11.03□□□□□ -0.64
NPHP3-211ENST00000515289 WWC1Q8IX03 1113 aa11.03□□□□□ -0.64
NPHP3-211ENST00000515289 NPDC1Q9NQX5 325 aaPredicted RBP11.03□□□□□ -0.64
NPHP3-211ENST00000515289 EVI5O60447 810 aa11.02□□□□□ -0.65
NPHP3-211ENST00000515289 TMEM259Q4ZIN3 620 aa11.02□□□□□ -0.65
NPHP3-211ENST00000515289 FOXD4L5Q5VV16 416 aaPredicted RBP11.02□□□□□ -0.65
NPHP3-211ENST00000515289 FOXD4L4Q8WXT5 416 aaPredicted RBP11.02□□□□□ -0.65
NPHP3-211ENST00000515289 RBM25P49756 843 aaKnown RBP11.01□□□□□ -0.65
NPHP3-211ENST00000515289 PDCD7Q8N8D1 485 aaKnown RBP11□□□□□ -0.65
NPHP3-211ENST00000515289 ZCCHC6Q5VYS8 1495 aaKnown RBP11□□□□□ -0.65
NPHP3-211ENST00000515289 LOC105371045A0A1W2PR82 267 aa10.99□□□□□ -0.65
NPHP3-211ENST00000515289 SOCS7O14512 581 aa10.99□□□□□ -0.65
NPHP3-211ENST00000515289 KCNA1Q09470 495 aa10.99□□□□□ -0.65
NPHP3-211ENST00000515289 CALR3Q96L12 384 aaKnown RBP10.99□□□□□ -0.65
NPHP3-211ENST00000515289 CDHR5Q9HBB8 845 aa10.99□□□□□ -0.65
NPHP3-211ENST00000515289 EN1Q05925 392 aaPredicted RBP10.98□□□□□ -0.65
NPHP3-211ENST00000515289 DIXDC1Q155Q3 683 aa10.98□□□□□ -0.65
NPHP3-211ENST00000515289 PPP2R2DQ66LE6 453 aa10.98□□□□□ -0.65
NPHP3-211ENST00000515289 BOLA1Q9Y3E2 137 aa10.98□□□□□ -0.65
NPHP3-211ENST00000515289 GDPD2Q9HCC8 539 aa10.97□□□□□ -0.65
NPHP3-211ENST00000515289 TRIM35Q9UPQ4 493 aa10.97□□□□□ -0.65
NPHP3-211ENST00000515289 MTMR14Q8NCE2 650 aa10.96□□□□□ -0.65
NPHP3-211ENST00000515289 ZNF428Q96B54 188 aa10.96□□□□□ -0.65
NPHP3-211ENST00000515289 BMP2KQ9NSY1 1161 aaPredicted RBP10.96□□□□□ -0.65
NPHP3-211ENST00000515289 BRD1O95696 1058 aa10.95□□□□□ -0.66
NPHP3-211ENST00000515289 GLMNQ92990 594 aa10.95□□□□□ -0.66
NPHP3-211ENST00000515289 TBC1D2Q9BYX2 928 aa10.95□□□□□ -0.66
NPHP3-211ENST00000515289 USTQ9Y2C2 406 aa10.95□□□□□ -0.66
NPHP3-211ENST00000515289 IGSF3O75054 1194 aa10.94□□□□□ -0.66
NPHP3-211ENST00000515289 OATP04181 439 aa10.94□□□□□ -0.66
NPHP3-211ENST00000515289 METTL3Q86U44 580 aaKnown RBP10.94□□□□□ -0.66
NPHP3-211ENST00000515289 EPAS1Q99814 870 aa10.94□□□□□ -0.66
NPHP3-211ENST00000515289 PRM3Q9NNZ6 103 aa10.94□□□□□ -0.66
NPHP3-211ENST00000515289 E9PSI1 815 aa10.93□□□□□ -0.66
NPHP3-211ENST00000515289 G3V3G9 751 aa10.93□□□□□ -0.66
NPHP3-211ENST00000515289 PIP4P2Q8N4L2 257 aa10.93□□□□□ -0.66
NPHP3-211ENST00000515289 PBXIP1Q96AQ6 731 aa10.93□□□□□ -0.66
NPHP3-211ENST00000515289 MAP3K7O43318 606 aa10.92□□□□□ -0.66
NPHP3-211ENST00000515289 PHF14O94880 888 aa10.92□□□□□ -0.66
NPHP3-211ENST00000515289 FBXO31Q5XUX0 539 aaPredicted RBP10.92□□□□□ -0.66
NPHP3-211ENST00000515289 ANO8Q9HCE9 1232 aaPredicted RBP10.92□□□□□ -0.66
NPHP3-211ENST00000515289 SHROOM4Q9ULL8 1493 aa10.91□□□□□ -0.66
NPHP3-211ENST00000515289 TUSC1Q2TAM9 212 aa10.9□□□□□ -0.66
NPHP3-211ENST00000515289 POM121CA8CG34 1229 aa10.89□□□□□ -0.67
NPHP3-211ENST00000515289 ABL2P42684 1182 aa10.89□□□□□ -0.67
NPHP3-211ENST00000515289 LIMD1Q9UGP4 676 aa10.89□□□□□ -0.67
NPHP3-211ENST00000515289 AMOTL2Q9Y2J4 779 aa10.89□□□□□ -0.67
NPHP3-211ENST00000515289 PXYLP1Q8TE99 480 aa10.88□□□□□ -0.67
NPHP3-211ENST00000515289 PTCD2Q8WV60 388 aaKnown RBP10.88□□□□□ -0.67
NPHP3-211ENST00000515289 IRX5P78411 483 aaPredicted RBP10.87□□□□□ -0.67
NPHP3-211ENST00000515289 RIC3Q7Z5B4 369 aa10.86□□□□□ -0.67
NPHP3-211ENST00000515289 NLRP7Q8WX94 980 aa10.86□□□□□ -0.67
NPHP3-211ENST00000515289 OCEL1Q9H607 264 aa10.86□□□□□ -0.67
NPHP3-211ENST00000515289 CSB-PGBD3P0DP91 1061 aa10.85□□□□□ -0.67
NPHP3-211ENST00000515289 TMEM92Q6UXU6 159 aa10.85□□□□□ -0.67
NPHP3-211ENST00000515289 TBC1D2BQ9UPU7 963 aa10.85□□□□□ -0.67
NPHP3-211ENST00000515289 ADGRG1Q9Y653 693 aa10.85□□□□□ -0.67
NPHP3-211ENST00000515289 TSR1Q2NL82 804 aaKnown RBP10.84□□□□□ -0.67
NPHP3-211ENST00000515289 FAM161AQ3B820 660 aa10.84□□□□□ -0.67
NPHP3-211ENST00000515289 RBM33Q96EV2 1170 aaKnown RBP10.83□□□□□ -0.68
NPHP3-211ENST00000515289 SPTLC1O15269 473 aa10.82□□□□□ -0.68
NPHP3-211ENST00000515289 CCDC27Q2M243 656 aa10.82□□□□□ -0.68
NPHP3-211ENST00000515289 SLAIN1Q8ND83 568 aa10.82□□□□□ -0.68
NPHP3-211ENST00000515289 CERKQ8TCT0 537 aa10.82□□□□□ -0.68
NPHP3-211ENST00000515289 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP10.81□□□□□ -0.68
NPHP3-211ENST00000515289 SRPK2P78362 688 aaKnown RBP10.81□□□□□ -0.68
NPHP3-211ENST00000515289 CFAP70Q5T0N1 1121 aa10.81□□□□□ -0.68
NPHP3-211ENST00000515289 TYW1BQ6NUM6 668 aa10.81□□□□□ -0.68
NPHP3-211ENST00000515289 CHRDL2Q6WN34 429 aa10.81□□□□□ -0.68
NPHP3-211ENST00000515289 SPIRE2Q8WWL2 714 aa10.81□□□□□ -0.68
NPHP3-211ENST00000515289 PCDHGA10Q9Y5H3 936 aa10.81□□□□□ -0.68
NPHP3-211ENST00000515289 IER5LQ5T953 404 aa10.8□□□□□ -0.68
NPHP3-211ENST00000515289 L3MBTL3Q96JM7 780 aaPredicted RBP10.8□□□□□ -0.68
NPHP3-211ENST00000515289 DCAF1Q9Y4B6 1507 aa10.79□□□□□ -0.68
NPHP3-211ENST00000515289 HDGFL1Q5TGJ6 251 aa10.79□□□□□ -0.68
Retrieved 100 of 20,778 RNA–protein pairs in 113.3 ms