RNA–Protein interactions for RNA: ENST00000509330.5

PHF3-209, Transcript of PHD finger protein 3, humanhuman

TSL 1 (best) BASIC

Gene PHF3, Length 2,969 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PHF3-209ENST00000509330 ZFYVE16Q7Z3T8 1539 aa20.79■□□□□ 0.92
PHF3-209ENST00000509330 USP47Q96K76 1375 aa20.78■□□□□ 0.92
PHF3-209ENST00000509330 CD109Q6YHK3 1445 aa20.78■□□□□ 0.92
PHF3-209ENST00000509330 PLA2R1Q13018 1463 aa20.78■□□□□ 0.92
PHF3-209ENST00000509330 UNC13BO14795 1591 aa20.77■□□□□ 0.92
PHF3-209ENST00000509330 KIF7Q2M1P5 1343 aa20.76■□□□□ 0.91
PHF3-209ENST00000509330 CCDC7Q96M83 1385 aa20.76■□□□□ 0.91
PHF3-209ENST00000509330 ATP7AQ04656 1500 aa20.74■□□□□ 0.91
PHF3-209ENST00000509330 RAPGEF3O95398 923 aa20.74■□□□□ 0.91
PHF3-209ENST00000509330 ARAP3Q8WWN8 1544 aa20.74■□□□□ 0.91
PHF3-209ENST00000509330 SPATA31E1Q6ZUB1 1445 aa20.73■□□□□ 0.91
PHF3-209ENST00000509330 NBPF1Q3BBV0 1214 aa20.71■□□□□ 0.91
PHF3-209ENST00000509330 IQGAP3Q86VI3 1631 aa20.71■□□□□ 0.91
PHF3-209ENST00000509330 RTEL1-TNFRSF6BF6WH68 1400 aa20.71■□□□□ 0.91
PHF3-209ENST00000509330 ROCK2O75116 1388 aaKnown RBP20.7■□□□□ 0.9
PHF3-209ENST00000509330 ST20-MTHFSA0A0A6YYL1 179 aa20.7■□□□□ 0.9
PHF3-209ENST00000509330 GGT6Q6P531 493 aa20.68■□□□□ 0.9
PHF3-209ENST00000509330 CNTLNQ9NXG0 1405 aa20.66■□□□□ 0.9
PHF3-209ENST00000509330 MAGI2Q86UL8 1455 aa20.66■□□□□ 0.9
PHF3-209ENST00000509330 INO80Q9ULG1 1556 aaPredicted RBP20.65■□□□□ 0.9
PHF3-209ENST00000509330 A2MP01023 1474 aa20.65■□□□□ 0.9
PHF3-209ENST00000509330 UHRF1BP1Q6BDS2 1440 aa20.65■□□□□ 0.9
PHF3-209ENST00000509330 DHX29Q7Z478 1369 aaKnown RBP20.65■□□□□ 0.9
PHF3-209ENST00000509330 CCDC184Q52MB2 194 aa20.64■□□□□ 0.9
PHF3-209ENST00000509330 RALGAPBQ86X10 1494 aa20.64■□□□□ 0.89
PHF3-209ENST00000509330 CCER2I3L3R5 266 aa20.64■□□□□ 0.89
PHF3-209ENST00000509330 KANK1Q14678 1352 aa20.63■□□□□ 0.89
PHF3-209ENST00000509330 ZNF518AQ6AHZ1 1483 aa20.63■□□□□ 0.89
PHF3-209ENST00000509330 BCORL1Q5H9F3 1711 aa20.62■□□□□ 0.89
PHF3-209ENST00000509330 PRAG1Q86YV5 1406 aa20.61■□□□□ 0.89
PHF3-209ENST00000509330 KDM5CP41229 1560 aa20.61■□□□□ 0.89
PHF3-209ENST00000509330 FAM69CQ0P6D2 419 aa20.6■□□□□ 0.89
PHF3-209ENST00000509330 E9PCH4 1651 aa20.6■□□□□ 0.89
PHF3-209ENST00000509330 KIDINS220Q9ULH0 1771 aa20.6■□□□□ 0.89
PHF3-209ENST00000509330 POGZQ7Z3K3 1410 aa20.59■□□□□ 0.89
PHF3-209ENST00000509330 ATP10AO60312 1499 aa20.59■□□□□ 0.89
PHF3-209ENST00000509330 CHGAP10645 457 aaKnown RBP20.58■□□□□ 0.89
PHF3-209ENST00000509330 PRKRIP1Q9H875 184 aaPredicted RBP20.57■□□□□ 0.88
PHF3-209ENST00000509330 RIMBP3CA6NJZ7 1639 aa20.57■□□□□ 0.88
PHF3-209ENST00000509330 RIMBP3BA6NNM3 1639 aa20.57■□□□□ 0.88
PHF3-209ENST00000509330 RIMBP3Q9UFD9 1639 aa20.57■□□□□ 0.88
PHF3-209ENST00000509330 UGGT1Q9NYU2 1555 aa20.56■□□□□ 0.88
PHF3-209ENST00000509330 FAM9BQ8IZU0 186 aa20.55■□□□□ 0.88
PHF3-209ENST00000509330 SENP3Q9H4L4 574 aaPredicted RBP20.54■□□□□ 0.88
PHF3-209ENST00000509330 HNRNPUQ00839 825 aaKnown RBP eCLIP20.52■□□□□ 0.88
PHF3-209ENST00000509330 MRS2Q9HD23 443 aa20.52■□□□□ 0.88
PHF3-209ENST00000509330 SENP3-EIF4A1A0A087X0R7 540 aa20.52■□□□□ 0.88
PHF3-209ENST00000509330 DEPDC5O75140 1603 aa20.51■□□□□ 0.87
PHF3-209ENST00000509330 WASHC2CQ9Y4E1 1318 aa20.51■□□□□ 0.87
PHF3-209ENST00000509330 MROH1Q8NDA8 1641 aa20.51■□□□□ 0.87
PHF3-209ENST00000509330 CFAP65Q6ZU64 1925 aaKnown RBP20.5■□□□□ 0.87
PHF3-209ENST00000509330 CLTCL1P53675 1640 aa20.5■□□□□ 0.87
PHF3-209ENST00000509330 TRPM1Q7Z4N2 1603 aa20.49■□□□□ 0.87
PHF3-209ENST00000509330 TRPM2O94759 1503 aa20.48■□□□□ 0.87
PHF3-209ENST00000509330 TET3O43151 1660 aa20.48■□□□□ 0.87
PHF3-209ENST00000509330 PRDM15P57071 1507 aaPredicted RBP20.47■□□□□ 0.87
PHF3-209ENST00000509330 SPHKAPQ2M3C7 1700 aa20.47■□□□□ 0.87
PHF3-209ENST00000509330 HECW2Q9P2P5 1572 aa20.47■□□□□ 0.87
PHF3-209ENST00000509330 CFAP74Q9C0B2 1584 aa20.47■□□□□ 0.87
PHF3-209ENST00000509330 FRMPD1Q5SYB0 1578 aa20.47■□□□□ 0.87
PHF3-209ENST00000509330 PTPRTO14522 1441 aa20.47■□□□□ 0.87
PHF3-209ENST00000509330 YEATS2Q9ULM3 1422 aa20.47■□□□□ 0.87
PHF3-209ENST00000509330 ABCA6Q8N139 1617 aa20.46■□□□□ 0.87
PHF3-209ENST00000509330 MLH3Q9UHC1 1453 aa20.46■□□□□ 0.87
PHF3-209ENST00000509330 NUTM2DQ5VT03 806 aaPredicted RBP20.46■□□□□ 0.87
PHF3-209ENST00000509330 CEP152O94986 1710 aa20.45■□□□□ 0.86
PHF3-209ENST00000509330 NEO1Q92859 1461 aa20.45■□□□□ 0.86
PHF3-209ENST00000509330 VWDEQ8N2E2 1590 aa20.45■□□□□ 0.86
PHF3-209ENST00000509330 TSPOAP1O95153 1857 aa20.44■□□□□ 0.86
PHF3-209ENST00000509330 EIF2AK4Q9P2K8 1649 aaKnown RBP20.43■□□□□ 0.86
PHF3-209ENST00000509330 PPRC1Q5VV67 1664 aaKnown RBP20.43■□□□□ 0.86
PHF3-209ENST00000509330 DISP3Q9P2K9 1392 aa20.43■□□□□ 0.86
PHF3-209ENST00000509330 POLR1AO95602 1720 aaPredicted RBP20.43■□□□□ 0.86
PHF3-209ENST00000509330 ADGRF5Q8IZF2 1346 aa20.42■□□□□ 0.86
PHF3-209ENST00000509330 CFAP70Q5T0N1 1121 aa20.42■□□□□ 0.86
PHF3-209ENST00000509330 EFCAB6Q5THR3 1501 aa20.41■□□□□ 0.86
PHF3-209ENST00000509330 TESK2Q96S53 571 aa20.41■□□□□ 0.86
PHF3-209ENST00000509330 NPATQ14207 1427 aa20.4■□□□□ 0.86
PHF3-209ENST00000509330 GPRASP1Q5JY77 1395 aa20.4■□□□□ 0.86
PHF3-209ENST00000509330 MAP3K4Q9Y6R4 1608 aa20.38■□□□□ 0.85
PHF3-209ENST00000509330 BCANQ96GW7 911 aa20.38■□□□□ 0.85
PHF3-209ENST00000509330 MLECQ14165 292 aa20.37■□□□□ 0.85
PHF3-209ENST00000509330 ARID4BQ4LE39 1312 aaPredicted RBP20.37■□□□□ 0.85
PHF3-209ENST00000509330 DIP2CQ9Y2E4 1556 aa20.36■□□□□ 0.85
PHF3-209ENST00000509330 SUPT16HQ9Y5B9 1047 aaKnown RBP20.36■□□□□ 0.85
PHF3-209ENST00000509330 MADDQ8WXG6 1647 aa20.35■□□□□ 0.85
PHF3-209ENST00000509330 TMF1P82094 1093 aa20.35■□□□□ 0.85
PHF3-209ENST00000509330 CC2D1BQ5T0F9 858 aaKnown RBP20.34■□□□□ 0.85
PHF3-209ENST00000509330 DIP2BQ9P265 1576 aa20.34■□□□□ 0.85
PHF3-209ENST00000509330 RNF17Q9BXT8 1623 aaKnown RBP20.34■□□□□ 0.85
PHF3-209ENST00000509330 RICTORQ6R327 1708 aa20.33■□□□□ 0.84
PHF3-209ENST00000509330 NOS1P29475 1434 aa20.32■□□□□ 0.84
PHF3-209ENST00000509330 ABCC3O15438 1527 aa20.32■□□□□ 0.84
PHF3-209ENST00000509330 PANK3Q9H999 370 aa20.32■□□□□ 0.84
PHF3-209ENST00000509330 FKBP8Q14318 412 aa20.31■□□□□ 0.84
PHF3-209ENST00000509330 TMC1Q8TDI8 760 aa20.3■□□□□ 0.84
PHF3-209ENST00000509330 MROH2AA6NES4 1674 aa20.3■□□□□ 0.84
PHF3-209ENST00000509330 COL17A1Q9UMD9 1497 aaPredicted RBP20.3■□□□□ 0.84
PHF3-209ENST00000509330 TMEM132EQ6IEE7 984 aa20.3■□□□□ 0.84
PHF3-209ENST00000509330 FBXO31Q5XUX0 539 aaPredicted RBP20.29■□□□□ 0.84
Retrieved 100 of 20,778 RNA–protein pairs in 82.1 ms