RNA–Protein interactions for RNA: ENST00000508466.1

LIMCH1-207, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2

Gene LIMCH1, Length 3,051 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-207ENST00000508466 UQCRHP07919 91 aa9.26□□□□□ -0.93
LIMCH1-207ENST00000508466 TNNQ9UQP3 1299 aa9.26□□□□□ -0.93
LIMCH1-207ENST00000508466 MAP3K1Q13233 1512 aa9.26□□□□□ -0.93
LIMCH1-207ENST00000508466 ADAMTS8Q9UP79 889 aa9.25□□□□□ -0.93
LIMCH1-207ENST00000508466 LRRC9Q6ZRR7 1453 aa9.25□□□□□ -0.93
LIMCH1-207ENST00000508466 SPINK5Q9NQ38 1064 aaPredicted RBP9.25□□□□□ -0.93
LIMCH1-207ENST00000508466 CANXP27824 592 aaKnown RBP9.25□□□□□ -0.93
LIMCH1-207ENST00000508466 CHAMP1Q96JM3 812 aa9.25□□□□□ -0.93
LIMCH1-207ENST00000508466 CERS3Q8IU89 383 aa9.24□□□□□ -0.93
LIMCH1-207ENST00000508466 ANP32BQ92688 251 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-207ENST00000508466 STAC3Q96MF2 364 aa9.24□□□□□ -0.93
LIMCH1-207ENST00000508466 CARD11Q9BXL7 1154 aa9.24□□□□□ -0.93
LIMCH1-207ENST00000508466 MSNP26038 577 aaKnown RBP9.24□□□□□ -0.93
LIMCH1-207ENST00000508466 NCOA2Q15596 1464 aa9.24□□□□□ -0.93
LIMCH1-207ENST00000508466 TPM2P07951 284 aa9.23□□□□□ -0.93
LIMCH1-207ENST00000508466 KDM5BQ9UGL1 1544 aa9.23□□□□□ -0.93
LIMCH1-207ENST00000508466 UACAQ9BZF9 1416 aa9.23□□□□□ -0.93
LIMCH1-207ENST00000508466 ZBTB9Q96C00 473 aa9.22□□□□□ -0.93
LIMCH1-207ENST00000508466 FHOD3Q2V2M9 1422 aa9.22□□□□□ -0.93
LIMCH1-207ENST00000508466 FOXD4L5Q5VV16 416 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-207ENST00000508466 FOXD4L4Q8WXT5 416 aaPredicted RBP9.22□□□□□ -0.93
LIMCH1-207ENST00000508466 ZNF830Q96NB3 372 aaPredicted RBP9.21□□□□□ -0.93
LIMCH1-207ENST00000508466 PANK3Q9H999 370 aa9.21□□□□□ -0.94
LIMCH1-207ENST00000508466 MYBBP1AQ9BQG0 1328 aaKnown RBP9.21□□□□□ -0.94
LIMCH1-207ENST00000508466 PIAS4Q8N2W9 510 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-207ENST00000508466 C17orf53Q8N3J3 647 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-207ENST00000508466 UPF2Q9HAU5 1272 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-207ENST00000508466 DMRT2Q9Y5R5 561 aa9.2□□□□□ -0.94
LIMCH1-207ENST00000508466 USP47Q96K76 1375 aa9.2□□□□□ -0.94
LIMCH1-207ENST00000508466 NASPP49321 788 aaPredicted RBP9.2□□□□□ -0.94
LIMCH1-207ENST00000508466 RGL3Q3MIN7 710 aa9.2□□□□□ -0.94
LIMCH1-207ENST00000508466 DNTTIP2Q5QJE6 756 aaKnown RBP9.2□□□□□ -0.94
LIMCH1-207ENST00000508466 MTUS2Q5JR59 1369 aa9.2□□□□□ -0.94
LIMCH1-207ENST00000508466 RNF214Q8ND24 703 aa9.2□□□□□ -0.94
LIMCH1-207ENST00000508466 TRERF1Q96PN7 1200 aa9.2□□□□□ -0.94
LIMCH1-207ENST00000508466 NAIPQ13075 1403 aa9.19□□□□□ -0.94
LIMCH1-207ENST00000508466 TNPO1Q92973 898 aaKnown RBP9.19□□□□□ -0.94
LIMCH1-207ENST00000508466 PPP4R3BQ5MIZ7 849 aa9.19□□□□□ -0.94
LIMCH1-207ENST00000508466 PRXQ9BXM0 1461 aa9.19□□□□□ -0.94
LIMCH1-207ENST00000508466 OFD1O75665 1012 aa9.18□□□□□ -0.94
LIMCH1-207ENST00000508466 CGNQ9P2M7 1197 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-207ENST00000508466 FOXD4L6Q3SYB3 417 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-207ENST00000508466 FOXD4L3Q6VB84 417 aaPredicted RBP9.18□□□□□ -0.94
LIMCH1-207ENST00000508466 RBM42Q9BTD8 480 aaKnown RBP9.18□□□□□ -0.94
LIMCH1-207ENST00000508466 ERICH3Q5RHP9 1530 aa9.18□□□□□ -0.94
LIMCH1-207ENST00000508466 ZSCAN30Q86W11 494 aa9.18□□□□□ -0.94
LIMCH1-207ENST00000508466 SMARCA4P51532 1647 aa9.17□□□□□ -0.94
LIMCH1-207ENST00000508466 DUSP27Q5VZP5 1158 aa9.17□□□□□ -0.94
LIMCH1-207ENST00000508466 CHMP5Q9NZZ3 219 aa9.17□□□□□ -0.94
LIMCH1-207ENST00000508466 RRP7AQ9Y3A4 280 aaKnown RBP9.17□□□□□ -0.94
LIMCH1-207ENST00000508466 ZSCAN20P17040 1043 aaPredicted RBP9.17□□□□□ -0.94
LIMCH1-207ENST00000508466 NLRP13Q86W25 1043 aa9.17□□□□□ -0.94
LIMCH1-207ENST00000508466 ZNF644Q9H582 1327 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-207ENST00000508466 PDZRN3Q9UPQ7 1066 aa9.16□□□□□ -0.94
LIMCH1-207ENST00000508466 PCDHB15Q9Y5E8 787 aa9.16□□□□□ -0.94
LIMCH1-207ENST00000508466 APAF1O14727 1248 aa9.16□□□□□ -0.94
LIMCH1-207ENST00000508466 ATP2B3Q16720 1220 aa9.16□□□□□ -0.94
LIMCH1-207ENST00000508466 C22orf23Q9BZE7 217 aa9.16□□□□□ -0.94
LIMCH1-207ENST00000508466 RBM27Q9P2N5 1060 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-207ENST00000508466 DDX49Q9Y6V7 483 aaKnown RBP9.16□□□□□ -0.94
LIMCH1-207ENST00000508466 TIAM1Q13009 1591 aa9.16□□□□□ -0.94
LIMCH1-207ENST00000508466 FMN1Q68DA7 1419 aa9.16□□□□□ -0.94
LIMCH1-207ENST00000508466 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-207ENST00000508466 ZFP91Q96JP5 570 aaPredicted RBP9.16□□□□□ -0.94
LIMCH1-207ENST00000508466 TBC1D32Q96NH3 1257 aa9.16□□□□□ -0.94
LIMCH1-207ENST00000508466 SSFA2P28290 1259 aa9.15□□□□□ -0.94
LIMCH1-207ENST00000508466 WDR43Q15061 677 aaKnown RBP eCLIP9.15□□□□□ -0.94
LIMCH1-207ENST00000508466 CAVIN1Q6NZI2 390 aaKnown RBP9.15□□□□□ -0.94
LIMCH1-207ENST00000508466 AEBP1Q8IUX7 1158 aa9.15□□□□□ -0.94
LIMCH1-207ENST00000508466 TMEM51Q9NW97 253 aa9.15□□□□□ -0.94
LIMCH1-207ENST00000508466 PDE3BQ13370 1112 aa9.15□□□□□ -0.95
LIMCH1-207ENST00000508466 ZNF777Q9ULD5 760 aaPredicted RBP9.15□□□□□ -0.95
LIMCH1-207ENST00000508466 PLEKHH1Q9ULM0 1364 aa9.14□□□□□ -0.95
LIMCH1-207ENST00000508466 CD2BP2O95400 341 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-207ENST00000508466 HSP90AB1P08238 724 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-207ENST00000508466 FGD6Q6ZV73 1430 aa9.14□□□□□ -0.95
LIMCH1-207ENST00000508466 LRPPRCP42704 1394 aaKnown RBP9.14□□□□□ -0.95
LIMCH1-207ENST00000508466 TNNT2P45379 298 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-207ENST00000508466 GOLGA2Q08379 1002 aa9.14□□□□□ -0.95
LIMCH1-207ENST00000508466 GOLGA6L2Q8N9W4 650 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-207ENST00000508466 DENND4BO75064 1496 aaPredicted RBP9.14□□□□□ -0.95
LIMCH1-207ENST00000508466 RLBP1P12271 317 aa9.13□□□□□ -0.95
LIMCH1-207ENST00000508466 NBPF1Q3BBV0 1214 aa9.13□□□□□ -0.95
LIMCH1-207ENST00000508466 PDZRN4Q6ZMN7 1036 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-207ENST00000508466 HSCBQ8IWL3 235 aa9.13□□□□□ -0.95
LIMCH1-207ENST00000508466 RALBP1Q15311 655 aa9.13□□□□□ -0.95
LIMCH1-207ENST00000508466 SMAP1Q8IYB5 467 aaPredicted RBP9.13□□□□□ -0.95
LIMCH1-207ENST00000508466 CHMP4CQ96CF2 233 aa9.13□□□□□ -0.95
LIMCH1-207ENST00000508466 RBSNQ9H1K0 784 aa9.13□□□□□ -0.95
LIMCH1-207ENST00000508466 EIF2AK3Q9NZJ5 1116 aaKnown RBP9.13□□□□□ -0.95
LIMCH1-207ENST00000508466 KIF15Q9NS87 1388 aa9.12□□□□□ -0.95
LIMCH1-207ENST00000508466 HFM1A2PYH4 1435 aa9.12□□□□□ -0.95
LIMCH1-207ENST00000508466 SPATA31E1Q6ZUB1 1445 aa9.12□□□□□ -0.95
LIMCH1-207ENST00000508466 MCTP1Q6DN14 999 aa9.12□□□□□ -0.95
LIMCH1-207ENST00000508466 PLCB2Q00722 1185 aa9.12□□□□□ -0.95
LIMCH1-207ENST00000508466 DMTNQ08495 405 aa9.12□□□□□ -0.95
LIMCH1-207ENST00000508466 PKD2Q13563 968 aa9.12□□□□□ -0.95
LIMCH1-207ENST00000508466 CENPJQ9HC77 1338 aaPredicted RBP9.12□□□□□ -0.95
LIMCH1-207ENST00000508466 PTMAP06454 111 aaKnown RBP9.11□□□□□ -0.95
LIMCH1-207ENST00000508466 PRIM1P49642 420 aaKnown RBP9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms