RNA–Protein interactions for RNA: ENST00000508465.5

NUP54-206, Transcript of nucleoporin 54, humanhuman

TSL 3

Gene NUP54, Length 744 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-206ENST00000508465 CADPS2Q86UW7 1296 aa10.37□□□□□ -0.75
NUP54-206ENST00000508465 PROX2Q3B8N5 592 aa10.36□□□□□ -0.75
NUP54-206ENST00000508465 LAPTM4BQ86VI4 370 aa10.36□□□□□ -0.75
NUP54-206ENST00000508465 EPAS1Q99814 870 aa10.36□□□□□ -0.75
NUP54-206ENST00000508465 COL9A1P20849 921 aa10.35□□□□□ -0.75
NUP54-206ENST00000508465 ONECUT3O60422 494 aaPredicted RBP10.34□□□□□ -0.75
NUP54-206ENST00000508465 A0A0G2JS52 829 aa10.32□□□□□ -0.76
NUP54-206ENST00000508465 CAMK2BQ13554 666 aa10.32□□□□□ -0.76
NUP54-206ENST00000508465 C6orf132Q5T0Z8 1188 aa10.32□□□□□ -0.76
NUP54-206ENST00000508465 KIAA1468Q9P260 1216 aa10.32□□□□□ -0.76
NUP54-206ENST00000508465 DPYSL4O14531 572 aa10.3□□□□□ -0.76
NUP54-206ENST00000508465 NYAP1Q6ZVC0 841 aa10.3□□□□□ -0.76
NUP54-206ENST00000508465 SOWAHBA6NEL2 793 aa10.29□□□□□ -0.76
NUP54-206ENST00000508465 ZFRQ96KR1 1074 aaKnown RBP10.29□□□□□ -0.76
NUP54-206ENST00000508465 IRX2Q9BZI1 471 aaPredicted RBP10.29□□□□□ -0.76
NUP54-206ENST00000508465 BCAMP50895 628 aa10.28□□□□□ -0.76
NUP54-206ENST00000508465 TRIM6-TRIM34B2RNG4 842 aa10.26□□□□□ -0.77
NUP54-206ENST00000508465 BBXQ8WY36 941 aaPredicted RBP10.26□□□□□ -0.77
NUP54-206ENST00000508465 RBM33Q96EV2 1170 aaKnown RBP10.26□□□□□ -0.77
NUP54-206ENST00000508465 ITGBL1O95965 494 aaPredicted RBP10.25□□□□□ -0.77
NUP54-206ENST00000508465 DDX12PQ92771 950 aa10.25□□□□□ -0.77
NUP54-206ENST00000508465 FAM98CQ17RN3 349 aaKnown RBP10.24□□□□□ -0.77
NUP54-206ENST00000508465 SEPT9Q9UHD8 586 aaPredicted RBP10.24□□□□□ -0.77
NUP54-206ENST00000508465 PACS2Q86VP3 889 aa10.22□□□□□ -0.77
NUP54-206ENST00000508465 WBP1LQ9NX94 342 aa10.22□□□□□ -0.77
NUP54-206ENST00000508465 KCNC4Q03721 635 aa10.21□□□□□ -0.77
NUP54-206ENST00000508465 LRCH3Q96II8 777 aa10.21□□□□□ -0.77
NUP54-206ENST00000508465 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.21□□□□□ -0.77
NUP54-206ENST00000508465 MAP3K7O43318 606 aa10.2□□□□□ -0.78
NUP54-206ENST00000508465 NBR1Q14596 966 aa10.2□□□□□ -0.78
NUP54-206ENST00000508465 TSR3Q9UJK0 312 aaKnown RBP10.2□□□□□ -0.78
NUP54-206ENST00000508465 SPDYE16A6NNV3 312 aaPredicted RBP10.19□□□□□ -0.78
NUP54-206ENST00000508465 EN1Q05925 392 aaPredicted RBP10.18□□□□□ -0.78
NUP54-206ENST00000508465 SPRYD3Q8NCJ5 442 aa10.18□□□□□ -0.78
NUP54-206ENST00000508465 PDIA6Q15084 440 aa10.17□□□□□ -0.78
NUP54-206ENST00000508465 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.17□□□□□ -0.78
NUP54-206ENST00000508465 HPS5Q9UPZ3 1129 aa10.17□□□□□ -0.78
NUP54-206ENST00000508465 PPP4CP60510 307 aa10.14□□□□□ -0.79
NUP54-206ENST00000508465 TSR1Q2NL82 804 aaKnown RBP10.14□□□□□ -0.79
NUP54-206ENST00000508465 CERKQ8TCT0 537 aa10.14□□□□□ -0.79
NUP54-206ENST00000508465 WDR70Q9NW82 654 aa10.14□□□□□ -0.79
NUP54-206ENST00000508465 E2F4Q16254 413 aa10.13□□□□□ -0.79
NUP54-206ENST00000508465 TSKSQ9UJT2 592 aa10.13□□□□□ -0.79
NUP54-206ENST00000508465 PRSS12P56730 875 aa10.11□□□□□ -0.79
NUP54-206ENST00000508465 CDCA7LQ96GN5 454 aa10.11□□□□□ -0.79
NUP54-206ENST00000508465 GRXCR2A6NFK2 248 aa10.09□□□□□ -0.79
NUP54-206ENST00000508465 HDGFP51858 240 aaKnown RBP10.09□□□□□ -0.79
NUP54-206ENST00000508465 SAMD7Q7Z3H4 446 aa10.07□□□□□ -0.8
NUP54-206ENST00000508465 ARIH1Q9Y4X5 557 aaPredicted RBP10.07□□□□□ -0.8
NUP54-206ENST00000508465 NBPF26B4DH59 902 aa10.06□□□□□ -0.8
NUP54-206ENST00000508465 SMAPO00193 183 aa10.06□□□□□ -0.8
NUP54-206ENST00000508465 Q6ZNB5 142 aa10.06□□□□□ -0.8
NUP54-206ENST00000508465 TATDN2Q93075 761 aa10.06□□□□□ -0.8
NUP54-206ENST00000508465 PNMA3Q9UL41 463 aa10.05□□□□□ -0.8
NUP54-206ENST00000508465 LAPTM4AQ15012 233 aa10.04□□□□□ -0.8
NUP54-206ENST00000508465 CFAP44Q96MT7 982 aa10.04□□□□□ -0.8
NUP54-206ENST00000508465 PAXIP1Q6ZW49 1069 aaPredicted RBP10.03□□□□□ -0.8
NUP54-206ENST00000508465 TJAP1Q5JTD0 557 aa10.01□□□□□ -0.81
NUP54-206ENST00000508465 NECTIN2Q92692 538 aa10.01□□□□□ -0.81
NUP54-206ENST00000508465 IL21Q9HBE4 155 aa10.01□□□□□ -0.81
NUP54-206ENST00000508465 FAM198AQ9UFP1 575 aa10.01□□□□□ -0.81
NUP54-206ENST00000508465 NUDT18Q6ZVK8 323 aa10□□□□□ -0.81
NUP54-206ENST00000508465 RBM27Q9P2N5 1060 aaKnown RBP10□□□□□ -0.81
NUP54-206ENST00000508465 RNF40O75150 1001 aa9.99□□□□□ -0.81
NUP54-206ENST00000508465 OSBPP22059 807 aa9.99□□□□□ -0.81
NUP54-206ENST00000508465 PRIM1P49642 420 aaKnown RBP9.99□□□□□ -0.81
NUP54-206ENST00000508465 AMER1Q5JTC6 1135 aaPredicted RBP9.99□□□□□ -0.81
NUP54-206ENST00000508465 MTRQ99707 1265 aa9.98□□□□□ -0.81
NUP54-206ENST00000508465 GFRA3O60609 400 aa9.96□□□□□ -0.82
NUP54-206ENST00000508465 SLC4A3P48751 1232 aa9.96□□□□□ -0.82
NUP54-206ENST00000508465 C3orf80F5H4A9 247 aa9.95□□□□□ -0.82
NUP54-206ENST00000508465 PRKD2Q9BZL6 878 aa9.95□□□□□ -0.82
NUP54-206ENST00000508465 CDHR5Q9HBB8 845 aa9.95□□□□□ -0.82
NUP54-206ENST00000508465 PPP1R18Q6NYC8 613 aa9.94□□□□□ -0.82
NUP54-206ENST00000508465 SLF2Q8IX21 1173 aa9.93□□□□□ -0.82
NUP54-206ENST00000508465 EIF4ENIF1Q9NRA8 985 aaKnown RBP9.92□□□□□ -0.82
NUP54-206ENST00000508465 V9GY48 417 aaPredicted RBP9.92□□□□□ -0.82
NUP54-206ENST00000508465 GGCXP38435 758 aa9.91□□□□□ -0.82
NUP54-206ENST00000508465 APLP1P51693 650 aa9.91□□□□□ -0.82
NUP54-206ENST00000508465 ZNF516Q92618 1163 aa9.91□□□□□ -0.82
NUP54-206ENST00000508465 SWT1Q5T5J6 900 aaKnown RBP9.9□□□□□ -0.82
NUP54-206ENST00000508465 TRAF7Q6Q0C0 670 aa9.9□□□□□ -0.82
NUP54-206ENST00000508465 PADI6Q6TGC4 694 aa9.9□□□□□ -0.82
NUP54-206ENST00000508465 TTC13Q8NBP0 860 aa9.9□□□□□ -0.82
NUP54-206ENST00000508465 NPDC1Q9NQX5 325 aaPredicted RBP9.89□□□□□ -0.83
NUP54-206ENST00000508465 NRG2O14511 850 aaPredicted RBP9.88□□□□□ -0.83
NUP54-206ENST00000508465 PRR14Q9BWN1 585 aa9.88□□□□□ -0.83
NUP54-206ENST00000508465 COPS2P61201 443 aa9.86□□□□□ -0.83
NUP54-206ENST00000508465 TMUB1Q9BVT8 246 aa9.85□□□□□ -0.83
NUP54-206ENST00000508465 NKX2-3Q8TAU0 364 aa9.84□□□□□ -0.83
NUP54-206ENST00000508465 ARHGEF1Q92888 912 aaKnown RBP9.83□□□□□ -0.84
NUP54-206ENST00000508465 EYA1Q99502 592 aa9.83□□□□□ -0.84
NUP54-206ENST00000508465 RTN4Q9NQC3 1192 aaKnown RBP9.83□□□□□ -0.84
NUP54-206ENST00000508465 ZPR1O75312 459 aa9.82□□□□□ -0.84
NUP54-206ENST00000508465 PDZRN3Q9UPQ7 1066 aa9.81□□□□□ -0.84
NUP54-206ENST00000508465 PCDHB3Q9Y5E6 796 aa9.81□□□□□ -0.84
NUP54-206ENST00000508465 RBM46Q8TBY0 533 aaKnown RBP9.8□□□□□ -0.84
NUP54-206ENST00000508465 DNAJB2P25686 324 aa9.79□□□□□ -0.84
NUP54-206ENST00000508465 MLLT3P42568 568 aaPredicted RBP9.77□□□□□ -0.85
NUP54-206ENST00000508465 LCE2BO14633 110 aa9.76□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 151.6 ms