RNA–Protein interactions for RNA: ENST00000496549.5

CRNKL1-205, Transcript of crooked neck pre-mRNA splicing factor 1, human

TSL 1 (best)

Gene CRNKL1, Length 4,093 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CRNKL1-205	ENST00000496549	KIF21A	Q7Z4S6	1674 aa		10.25	□□□□□ -0.77
CRNKL1-205	ENST00000496549	KANK4	Q5T7N3	995 aa	Predicted RBP	10.25	□□□□□ -0.77
CRNKL1-205	ENST00000496549	ZBTB7C	A1YPR0	619 aa		10.25	□□□□□ -0.77
CRNKL1-205	ENST00000496549	MAPK8IP3	Q9UPT6	1336 aa		10.24	□□□□□ -0.77
CRNKL1-205	ENST00000496549	HAP1	P54257	671 aa	Predicted RBP	10.24	□□□□□ -0.77
CRNKL1-205	ENST00000496549	CCDC184	Q52MB2	194 aa		10.24	□□□□□ -0.77
CRNKL1-205	ENST00000496549	AEBP2	Q6ZN18	517 aa	Predicted RBP	10.23	□□□□□ -0.77
CRNKL1-205	ENST00000496549	CFTR	P13569	1480 aa		10.23	□□□□□ -0.77
CRNKL1-205	ENST00000496549	FBLN2	P98095	1184 aa		10.23	□□□□□ -0.77
CRNKL1-205	ENST00000496549	ABCC8	Q09428	1581 aa		10.23	□□□□□ -0.77
CRNKL1-205	ENST00000496549	CCDC39	Q9UFE4	941 aa		10.23	□□□□□ -0.77
CRNKL1-205	ENST00000496549	DDX49	Q9Y6V7	483 aa	Known RBP	10.23	□□□□□ -0.77
CRNKL1-205	ENST00000496549	KCNJ4	P48050	445 aa		10.22	□□□□□ -0.77
CRNKL1-205	ENST00000496549	FHAD1	B1AJZ9	1412 aa		10.22	□□□□□ -0.77
CRNKL1-205	ENST00000496549	GOLGA6L6	A8MZA4	724 aa		10.21	□□□□□ -0.77
CRNKL1-205	ENST00000496549	PLIN1	O60240	522 aa		10.21	□□□□□ -0.77
CRNKL1-205	ENST00000496549	ZFP91	Q96JP5	570 aa	Predicted RBP	10.21	□□□□□ -0.77
CRNKL1-205	ENST00000496549	DHX37	Q8IY37	1157 aa	Known RBP	10.21	□□□□□ -0.78
CRNKL1-205	ENST00000496549	KIF3A	Q9Y496	699 aa		10.21	□□□□□ -0.78
CRNKL1-205	ENST00000496549	PATL2	C9JE40	543 aa	Known RBP	10.2	□□□□□ -0.78
CRNKL1-205	ENST00000496549	CLGN	O14967	610 aa		10.2	□□□□□ -0.78
CRNKL1-205	ENST00000496549	NBPF1	Q3BBV0	1214 aa		10.2	□□□□□ -0.78
CRNKL1-205	ENST00000496549	TEX2	Q8IWB9	1127 aa		10.2	□□□□□ -0.78
CRNKL1-205	ENST00000496549	CALCOCO1	Q9P1Z2	691 aa		10.19	□□□□□ -0.78
CRNKL1-205	ENST00000496549	RRBP1	Q9P2E9	1410 aa	Known RBP	10.19	□□□□□ -0.78
CRNKL1-205	ENST00000496549	PDCL2	Q8N4E4	241 aa		10.19	□□□□□ -0.78
CRNKL1-205	ENST00000496549	TIGD1	Q96MW7	591 aa		10.19	□□□□□ -0.78
CRNKL1-205	ENST00000496549	DIAPH3	Q9NSV4	1193 aa		10.19	□□□□□ -0.78
CRNKL1-205	ENST00000496549	RNF123	Q5XPI4	1314 aa		10.19	□□□□□ -0.78
CRNKL1-205	ENST00000496549	XPC	Q01831	940 aa	Predicted RBP	10.19	□□□□□ -0.78
CRNKL1-205	ENST00000496549	MRC2	Q9UBG0	1479 aa		10.19	□□□□□ -0.78
CRNKL1-205	ENST00000496549	MCM5	P33992	734 aa		10.18	□□□□□ -0.78
CRNKL1-205	ENST00000496549	WDR43	Q15061	677 aa	Known RBP eCLIP	10.18	□□□□□ -0.78
CRNKL1-205	ENST00000496549	FSD2	A1L4K1	749 aa		10.18	□□□□□ -0.78
CRNKL1-205	ENST00000496549	CC2D1B	Q5T0F9	858 aa	Known RBP	10.18	□□□□□ -0.78
CRNKL1-205	ENST00000496549	GOLGA6L1	Q8N7Z2	621 aa		10.18	□□□□□ -0.78
CRNKL1-205	ENST00000496549	CCDC7	Q96M83	1385 aa		10.17	□□□□□ -0.78
CRNKL1-205	ENST00000496549	HS1BP3	Q53T59	392 aa		10.16	□□□□□ -0.78
CRNKL1-205	ENST00000496549	HOMEZ	Q8IX15	550 aa		10.16	□□□□□ -0.78
CRNKL1-205	ENST00000496549	AXDND1	Q5T1B0	1012 aa	Predicted RBP	10.16	□□□□□ -0.78
CRNKL1-205	ENST00000496549	CUX2	O14529	1486 aa		10.16	□□□□□ -0.78
CRNKL1-205	ENST00000496549	URB2	Q14146	1524 aa	Known RBP	10.15	□□□□□ -0.78
CRNKL1-205	ENST00000496549	RALBP1	Q15311	655 aa		10.15	□□□□□ -0.79
CRNKL1-205	ENST00000496549	BCCIP	Q9P287	314 aa	Known RBP eCLIP	10.15	□□□□□ -0.79
CRNKL1-205	ENST00000496549	PRIMPOL	Q96LW4	560 aa		10.14	□□□□□ -0.79
CRNKL1-205	ENST00000496549	MFAP1	P55081	439 aa	Known RBP	10.14	□□□□□ -0.79
CRNKL1-205	ENST00000496549	THOC2	Q8NI27	1593 aa	Known RBP	10.14	□□□□□ -0.79
CRNKL1-205	ENST00000496549	PLCB2	Q00722	1185 aa		10.13	□□□□□ -0.79
CRNKL1-205	ENST00000496549	SKAP1	Q86WV1	359 aa		10.13	□□□□□ -0.79
CRNKL1-205	ENST00000496549	SYAP1	Q96A49	352 aa	Predicted RBP	10.13	□□□□□ -0.79
CRNKL1-205	ENST00000496549	RIPK4	P57078	832 aa		10.12	□□□□□ -0.79
CRNKL1-205	ENST00000496549	C8orf34	Q49A92	452 aa		10.12	□□□□□ -0.79
CRNKL1-205	ENST00000496549	TDRD9	Q8NDG6	1382 aa	Known RBP	10.12	□□□□□ -0.79
CRNKL1-205	ENST00000496549	CALR	P27797	417 aa	Known RBP	10.12	□□□□□ -0.79
CRNKL1-205	ENST00000496549	WWC1	Q8IX03	1113 aa		10.12	□□□□□ -0.79
CRNKL1-205	ENST00000496549	HDAC5	Q9UQL6	1122 aa		10.12	□□□□□ -0.79
CRNKL1-205	ENST00000496549	SPDYE4	A6NLX3	237 aa		10.11	□□□□□ -0.79
CRNKL1-205	ENST00000496549	PMFBP1	Q8TBY8	1022 aa		10.11	□□□□□ -0.79
CRNKL1-205	ENST00000496549	DNAJC5	Q9H3Z4	198 aa		10.11	□□□□□ -0.79
CRNKL1-205	ENST00000496549	TEX35	Q5T0J7	233 aa		10.11	□□□□□ -0.79
CRNKL1-205	ENST00000496549	SECISBP2L	Q93073	1101 aa	Known RBP	10.11	□□□□□ -0.79
CRNKL1-205	ENST00000496549	TRIM6-TRIM34	B2RNG4	842 aa		10.1	□□□□□ -0.79
CRNKL1-205	ENST00000496549	ZNF830	Q96NB3	372 aa	Predicted RBP	10.1	□□□□□ -0.79
CRNKL1-205	ENST00000496549	TRIM34	Q9BYJ4	488 aa		10.1	□□□□□ -0.79
CRNKL1-205	ENST00000496549	ZKSCAN5	Q9Y2L8	839 aa		10.1	□□□□□ -0.79
CRNKL1-205	ENST00000496549	HSP90B1	P14625	803 aa	Known RBP	10.1	□□□□□ -0.79
CRNKL1-205	ENST00000496549	CIZ1	Q9ULV3	898 aa	Predicted RBP	10.1	□□□□□ -0.79
CRNKL1-205	ENST00000496549	PHLDB1	Q86UU1	1377 aa		10.1	□□□□□ -0.79
CRNKL1-205	ENST00000496549	MYBBP1A	Q9BQG0	1328 aa	Known RBP	10.1	□□□□□ -0.79
CRNKL1-205	ENST00000496549	NOM1	Q5C9Z4	860 aa	Known RBP	10.1	□□□□□ -0.79
CRNKL1-205	ENST00000496549	TBC1D2	Q9BYX2	928 aa		10.1	□□□□□ -0.79
CRNKL1-205	ENST00000496549	TMEM51	Q9NW97	253 aa		10.1	□□□□□ -0.79
CRNKL1-205	ENST00000496549	ERBB4	Q15303	1308 aa		10.1	□□□□□ -0.79
CRNKL1-205	ENST00000496549	RAD54L2	Q9Y4B4	1467 aa		10.09	□□□□□ -0.79
CRNKL1-205	ENST00000496549	NLRP13	Q86W25	1043 aa		10.09	□□□□□ -0.79
CRNKL1-205	ENST00000496549	NOL7	Q9UMY1	257 aa	Known RBP	10.09	□□□□□ -0.79
CRNKL1-205	ENST00000496549	MAPKBP1	O60336	1514 aa		10.09	□□□□□ -0.79
CRNKL1-205	ENST00000496549	ZNF608	Q9ULD9	1512 aa	Predicted RBP	10.09	□□□□□ -0.79
CRNKL1-205	ENST00000496549	ROCK2	O75116	1388 aa	Known RBP	10.09	□□□□□ -0.79
CRNKL1-205	ENST00000496549	HTATSF1	O43719	755 aa	Known RBP	10.09	□□□□□ -0.79
CRNKL1-205	ENST00000496549	C22orf23	Q9BZE7	217 aa		10.09	□□□□□ -0.79
CRNKL1-205	ENST00000496549	ERICH4	A6NGS2	130 aa		10.08	□□□□□ -0.8
CRNKL1-205	ENST00000496549	FAM193A	P78312	1265 aa		10.08	□□□□□ -0.8
CRNKL1-205	ENST00000496549	PNISR	Q8TF01	805 aa	Known RBP	10.08	□□□□□ -0.8
CRNKL1-205	ENST00000496549	FEZ1	Q99689	392 aa		10.08	□□□□□ -0.8
CRNKL1-205	ENST00000496549	RUSC2	Q8N2Y8	1516 aa		10.08	□□□□□ -0.8
CRNKL1-205	ENST00000496549	PHF14	O94880	888 aa		10.08	□□□□□ -0.8
CRNKL1-205	ENST00000496549	GPS2	Q13227	327 aa		10.08	□□□□□ -0.8
CRNKL1-205	ENST00000496549	ZNF622	Q969S3	477 aa	Known RBP eCLIP	10.08	□□□□□ -0.8	4e-8	■■□□□ 12.8
CRNKL1-205	ENST00000496549	CWC15	Q9P013	229 aa	Known RBP	10.08	□□□□□ -0.8
CRNKL1-205	ENST00000496549	AQR	O60306	1485 aa	Known RBP eCLIP	10.08	□□□□□ -0.8	7e-7	■■■■□ 20
CRNKL1-205	ENST00000496549	KIF15	Q9NS87	1388 aa		10.08	□□□□□ -0.8
CRNKL1-205	ENST00000496549	ZSCAN20	P17040	1043 aa	Predicted RBP	10.07	□□□□□ -0.8
CRNKL1-205	ENST00000496549	TOPBP1	Q92547	1522 aa		10.07	□□□□□ -0.8
CRNKL1-205	ENST00000496549	KIF21B	O75037	1637 aa		10.07	□□□□□ -0.8
CRNKL1-205	ENST00000496549	ZNF500	O60304	480 aa	Predicted RBP	10.07	□□□□□ -0.8
CRNKL1-205	ENST00000496549	IGSF3	O75054	1194 aa		10.07	□□□□□ -0.8
CRNKL1-205	ENST00000496549	GTF2A1	P52655	376 aa	Predicted RBP	10.07	□□□□□ -0.8
CRNKL1-205	ENST00000496549	GABPB1	Q06547	395 aa	Predicted RBP	10.07	□□□□□ -0.8
CRNKL1-205	ENST00000496549	RWDD1	Q9H446	243 aa	Predicted RBP	10.07	□□□□□ -0.8

Retrieved 100 of 20,778 RNA–protein pairs in 26.7 ms