RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 UACAQ9BZF9 1416 aa16.51■□□□□ 0.23
PTPRF-215ENST00000496447 VGFO15240 615 aaPredicted RBP16.5■□□□□ 0.23
PTPRF-215ENST00000496447 EVA1CP58658 441 aa16.48■□□□□ 0.23
PTPRF-215ENST00000496447 NCBP3Q53F19 620 aaKnown RBP16.47■□□□□ 0.23
PTPRF-215ENST00000496447 NLRP13Q86W25 1043 aa16.47■□□□□ 0.23
PTPRF-215ENST00000496447 PMFBP1Q8TBY8 1022 aa16.47■□□□□ 0.23
PTPRF-215ENST00000496447 COG3Q96JB2 828 aa16.47■□□□□ 0.23
PTPRF-215ENST00000496447 TRIM6-TRIM34B2RNG4 842 aa16.46■□□□□ 0.23
PTPRF-215ENST00000496447 MSNP26038 577 aaKnown RBP16.46■□□□□ 0.23
PTPRF-215ENST00000496447 FRAT2O75474 233 aaPredicted RBP16.45■□□□□ 0.22
PTPRF-215ENST00000496447 C1orf141Q5JVX7 400 aa16.45■□□□□ 0.22
PTPRF-215ENST00000496447 DRC7Q8IY82 874 aa16.45■□□□□ 0.22
PTPRF-215ENST00000496447 CLUAP1Q96AJ1 413 aa16.44■□□□□ 0.22
PTPRF-215ENST00000496447 EVC2Q86UK5 1308 aa16.44■□□□□ 0.22
PTPRF-215ENST00000496447 USP35Q9P2H5 1018 aa16.44■□□□□ 0.22
PTPRF-215ENST00000496447 CENPJQ9HC77 1338 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-215ENST00000496447 PRKCSHP14314 528 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-215ENST00000496447 AEBP2Q6ZN18 517 aaPredicted RBP16.44■□□□□ 0.22
PTPRF-215ENST00000496447 FAM69CQ0P6D2 419 aa16.43■□□□□ 0.22
PTPRF-215ENST00000496447 IPO9Q96P70 1041 aaKnown RBP16.43■□□□□ 0.22
PTPRF-215ENST00000496447 HSP90AA2PQ14568 343 aaPredicted RBP16.42■□□□□ 0.22
PTPRF-215ENST00000496447 MINK1Q8N4C8 1332 aaPredicted RBP16.42■□□□□ 0.22
PTPRF-215ENST00000496447 SMARCA4P51532 1647 aa16.42■□□□□ 0.22
PTPRF-215ENST00000496447 HSP90B1P14625 803 aaKnown RBP16.42■□□□□ 0.22
PTPRF-215ENST00000496447 ST20-MTHFSA0A0A6YYL1 179 aa16.42■□□□□ 0.22
PTPRF-215ENST00000496447 HTATSF1O43719 755 aaKnown RBP16.42■□□□□ 0.22
PTPRF-215ENST00000496447 CGNL1Q0VF96 1302 aa16.41■□□□□ 0.22
PTPRF-215ENST00000496447 PHLDB1Q86UU1 1377 aa16.4■□□□□ 0.22
PTPRF-215ENST00000496447 PANK3Q9H999 370 aa16.4■□□□□ 0.22
PTPRF-215ENST00000496447 MSH5O43196 834 aa16.4■□□□□ 0.22
PTPRF-215ENST00000496447 VSIG10Q8N0Z9 540 aa16.4■□□□□ 0.22
PTPRF-215ENST00000496447 RRP7AQ9Y3A4 280 aaKnown RBP16.4■□□□□ 0.22
PTPRF-215ENST00000496447 FANCIQ9NVI1 1328 aa16.4■□□□□ 0.22
PTPRF-215ENST00000496447 KIF15Q9NS87 1388 aa16.39■□□□□ 0.21
PTPRF-215ENST00000496447 TOMM22Q9NS69 142 aa16.39■□□□□ 0.21
PTPRF-215ENST00000496447 MEX3CQ5U5Q3 659 aaKnown RBP16.38■□□□□ 0.21
PTPRF-215ENST00000496447 CHAF1AQ13111 956 aaPredicted RBP16.38■□□□□ 0.21
PTPRF-215ENST00000496447 TEFQ10587 303 aa16.38■□□□□ 0.21
PTPRF-215ENST00000496447 MFAP1P55081 439 aaKnown RBP16.38■□□□□ 0.21
PTPRF-215ENST00000496447 GBP4Q96PP9 640 aa16.37■□□□□ 0.21
PTPRF-215ENST00000496447 GAPVD1Q14C86 1478 aa16.37■□□□□ 0.21
PTPRF-215ENST00000496447 TTC5Q8N0Z6 440 aa16.37■□□□□ 0.21
PTPRF-215ENST00000496447 PSME1Q06323 249 aa16.36■□□□□ 0.21
PTPRF-215ENST00000496447 PDE3BQ13370 1112 aa16.36■□□□□ 0.21
PTPRF-215ENST00000496447 MYBBP1AQ9BQG0 1328 aaKnown RBP16.35■□□□□ 0.21
PTPRF-215ENST00000496447 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.35■□□□□ 0.21
PTPRF-215ENST00000496447 ELL2O00472 640 aaPredicted RBP16.35■□□□□ 0.21
PTPRF-215ENST00000496447 KIAA2012Q0VF49 1180 aa16.35■□□□□ 0.21
PTPRF-215ENST00000496447 TCERG1O14776 1098 aaKnown RBP16.34■□□□□ 0.21
PTPRF-215ENST00000496447 CCDC34Q96HJ3 373 aa16.34■□□□□ 0.21
PTPRF-215ENST00000496447 RASSF8Q8NHQ8 419 aa16.33■□□□□ 0.21
PTPRF-215ENST00000496447 PTMSP20962 102 aa16.33■□□□□ 0.2
PTPRF-215ENST00000496447 FGD5Q6ZNL6 1462 aa16.32■□□□□ 0.2
PTPRF-215ENST00000496447 NGEFQ8N5V2 710 aa16.31■□□□□ 0.2
PTPRF-215ENST00000496447 SYTL4Q96C24 671 aaPredicted RBP16.31■□□□□ 0.2
PTPRF-215ENST00000496447 SLKQ9H2G2 1235 aaPredicted RBP16.31■□□□□ 0.2
PTPRF-215ENST00000496447 NOL8Q76FK4 1167 aaKnown RBP16.31■□□□□ 0.2
PTPRF-215ENST00000496447 NEXNQ0ZGT2 675 aa16.3■□□□□ 0.2
PTPRF-215ENST00000496447 ATF3P18847 181 aa16.3■□□□□ 0.2
PTPRF-215ENST00000496447 SYAP1Q96A49 352 aaPredicted RBP16.29■□□□□ 0.2
PTPRF-215ENST00000496447 EIF2S2P20042 333 aaKnown RBP16.29■□□□□ 0.2
PTPRF-215ENST00000496447 RAD54L2Q9Y4B4 1467 aa16.29■□□□□ 0.2
PTPRF-215ENST00000496447 VPS53Q5VIR6 699 aa16.29■□□□□ 0.2
PTPRF-215ENST00000496447 RUSC2Q8N2Y8 1516 aa16.28■□□□□ 0.2
PTPRF-215ENST00000496447 TPM4P67936 248 aa16.28■□□□□ 0.2
PTPRF-215ENST00000496447 USP47Q96K76 1375 aa16.28■□□□□ 0.2
PTPRF-215ENST00000496447 MARCH6O60337 910 aa16.28■□□□□ 0.2
PTPRF-215ENST00000496447 GOLGA6L3A6NEY3 463 aa16.27■□□□□ 0.2
PTPRF-215ENST00000496447 DIAPH1O60610 1272 aaKnown RBP16.27■□□□□ 0.2
PTPRF-215ENST00000496447 MYOM3Q5VTT5 1437 aa16.27■□□□□ 0.19
PTPRF-215ENST00000496447 BCL2L13Q9BXK5 485 aa16.27■□□□□ 0.19
PTPRF-215ENST00000496447 AMER1Q5JTC6 1135 aaPredicted RBP16.26■□□□□ 0.19
PTPRF-215ENST00000496447 KIF16BQ96L93 1317 aa16.26■□□□□ 0.19
PTPRF-215ENST00000496447 PKNOX2Q96KN3 472 aa16.25■□□□□ 0.19
PTPRF-215ENST00000496447 CSPP1Q1MSJ5 1256 aa16.25■□□□□ 0.19
PTPRF-215ENST00000496447 KIF3AQ9Y496 699 aa16.25■□□□□ 0.19
PTPRF-215ENST00000496447 E9PSI1 815 aa16.25■□□□□ 0.19
PTPRF-215ENST00000496447 RILPL2Q969X0 211 aa16.25■□□□□ 0.19
PTPRF-215ENST00000496447 C9orf78Q9NZ63 289 aaPredicted RBP16.25■□□□□ 0.19
PTPRF-215ENST00000496447 ZKSCAN2Q63HK3 967 aa16.24■□□□□ 0.19
PTPRF-215ENST00000496447 AQRO60306 1485 aaKnown RBP eCLIP16.24■□□□□ 0.191e-6■■■■■ 36.8
PTPRF-215ENST00000496447 NOL10Q9BSC4 688 aaKnown RBP16.24■□□□□ 0.19
PTPRF-215ENST00000496447 IGF1RP08069 1367 aa16.24■□□□□ 0.19
PTPRF-215ENST00000496447 GSE1Q14687 1217 aa16.24■□□□□ 0.19
PTPRF-215ENST00000496447 GZF1Q9H116 711 aaPredicted RBP16.24■□□□□ 0.19
PTPRF-215ENST00000496447 ST18O60284 1047 aa16.23■□□□□ 0.19
PTPRF-215ENST00000496447 DHX57Q6P158 1386 aaKnown RBP16.23■□□□□ 0.19
PTPRF-215ENST00000496447 FOXD4L1Q9NU39 408 aa16.22■□□□□ 0.19
PTPRF-215ENST00000496447 ANKRD45Q5TZF3 282 aa16.22■□□□□ 0.19
PTPRF-215ENST00000496447 NECTIN2Q92692 538 aa16.22■□□□□ 0.19
PTPRF-215ENST00000496447 RAPGEF4Q8WZA2 1011 aa16.21■□□□□ 0.19
PTPRF-215ENST00000496447 TRIM34Q9BYJ4 488 aa16.21■□□□□ 0.19
PTPRF-215ENST00000496447 DDX58O95786 925 aaKnown RBP16.21■□□□□ 0.19
PTPRF-215ENST00000496447 AMOTL1Q8IY63 956 aa16.21■□□□□ 0.19
PTPRF-215ENST00000496447 LRRFIP1Q32MZ4 808 aaKnown RBP16.21■□□□□ 0.19
PTPRF-215ENST00000496447 CREBRFQ8IUR6 639 aa16.2■□□□□ 0.18
PTPRF-215ENST00000496447 PRDM2Q13029 1718 aa16.2■□□□□ 0.18
PTPRF-215ENST00000496447 SF3A1Q15459 793 aaKnown RBP16.2■□□□□ 0.18
PTPRF-215ENST00000496447 ZNF644Q9H582 1327 aaPredicted RBP16.19■□□□□ 0.18
PTPRF-215ENST00000496447 RIPK4P57078 832 aa16.19■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms