RNA–Protein interactions for RNA: ENST00000486235.5

TMEM39A-209, Transcript of transmembrane protein 39A, humanhuman

TSL 3

Gene TMEM39A, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-209ENST00000486235 PDE4AP27815 886 aa12.25□□□□□ -0.45
TMEM39A-209ENST00000486235 URB2Q14146 1524 aaKnown RBP12.25□□□□□ -0.45
TMEM39A-209ENST00000486235 STAC3Q96MF2 364 aa12.24□□□□□ -0.45
TMEM39A-209ENST00000486235 KCTD12Q96CX2 325 aaKnown RBP12.23□□□□□ -0.45
TMEM39A-209ENST00000486235 KCNH8Q96L42 1107 aa12.23□□□□□ -0.45
TMEM39A-209ENST00000486235 LARP6Q9BRS8 491 aaKnown RBP12.23□□□□□ -0.45
TMEM39A-209ENST00000486235 PLA2G2EQ9NZK7 142 aa12.22□□□□□ -0.45
TMEM39A-209ENST00000486235 RSF1Q96T23 1441 aaPredicted RBP12.21□□□□□ -0.45
TMEM39A-209ENST00000486235 TOP2AP11388 1531 aaKnown RBP12.2□□□□□ -0.46
TMEM39A-209ENST00000486235 VPS9D1Q9Y2B5 631 aa12.18□□□□□ -0.46
TMEM39A-209ENST00000486235 EVI5O60447 810 aa12.17□□□□□ -0.46
TMEM39A-209ENST00000486235 DDX27Q96GQ7 796 aaKnown RBP12.17□□□□□ -0.46
TMEM39A-209ENST00000486235 FOSBP53539 338 aa12.16□□□□□ -0.46
TMEM39A-209ENST00000486235 RIMBP3CA6NJZ7 1639 aa12.15□□□□□ -0.46
TMEM39A-209ENST00000486235 RIMBP3BA6NNM3 1639 aa12.15□□□□□ -0.46
TMEM39A-209ENST00000486235 RIMBP3Q9UFD9 1639 aa12.15□□□□□ -0.46
TMEM39A-209ENST00000486235 BCL2L12Q9HB09 334 aa12.15□□□□□ -0.46
TMEM39A-209ENST00000486235 ZNF608Q9ULD9 1512 aaPredicted RBP12.15□□□□□ -0.46
TMEM39A-209ENST00000486235 MAP3K9P80192 1104 aa12.13□□□□□ -0.47
TMEM39A-209ENST00000486235 ANO8Q9HCE9 1232 aaPredicted RBP12.13□□□□□ -0.47
TMEM39A-209ENST00000486235 PTPREP23469 700 aa12.12□□□□□ -0.47
TMEM39A-209ENST00000486235 PTPN5P54829 565 aa12.12□□□□□ -0.47
TMEM39A-209ENST00000486235 CADPS2Q86UW7 1296 aa12.12□□□□□ -0.47
TMEM39A-209ENST00000486235 IFT140Q96RY7 1462 aa12.12□□□□□ -0.47
TMEM39A-209ENST00000486235 ADAM33Q9BZ11 813 aa12.11□□□□□ -0.47
TMEM39A-209ENST00000486235 ARHGEF11O15085 1522 aa12.11□□□□□ -0.47
TMEM39A-209ENST00000486235 JPH4Q96JJ6 628 aa12.1□□□□□ -0.47
TMEM39A-209ENST00000486235 EMILIN3Q9NT22 766 aa12.1□□□□□ -0.47
TMEM39A-209ENST00000486235 MFSD10Q14728 455 aa12.09□□□□□ -0.47
TMEM39A-209ENST00000486235 ZDHHC16Q969W1 377 aa12.09□□□□□ -0.47
TMEM39A-209ENST00000486235 CCDC88BA6NC98 1476 aa12.08□□□□□ -0.47
TMEM39A-209ENST00000486235 TOPBP1Q92547 1522 aa12.08□□□□□ -0.48
TMEM39A-209ENST00000486235 PRDM2Q13029 1718 aa12.07□□□□□ -0.48
TMEM39A-209ENST00000486235 CYB5RLQ6IPT4 315 aa12.07□□□□□ -0.48
TMEM39A-209ENST00000486235 ZBED2Q9BTP6 218 aa12.07□□□□□ -0.48
TMEM39A-209ENST00000486235 SLC4A5Q9BY07 1137 aa12.06□□□□□ -0.48
TMEM39A-209ENST00000486235 GOLGA8CPA6NN73 597 aa12.04□□□□□ -0.48
TMEM39A-209ENST00000486235 BHMG1C9JSJ3 638 aaPredicted RBP12.04□□□□□ -0.48
TMEM39A-209ENST00000486235 EIF4G3O43432 1585 aaKnown RBP12.04□□□□□ -0.48
TMEM39A-209ENST00000486235 MRPL50Q8N5N7 158 aaKnown RBP12.02□□□□□ -0.49
TMEM39A-209ENST00000486235 PCDHGA10Q9Y5H3 936 aa12.02□□□□□ -0.49
TMEM39A-209ENST00000486235 AQRO60306 1485 aaKnown RBP eCLIP12.02□□□□□ -0.494e-11■■■■■ 56.4
TMEM39A-209ENST00000486235 WNT2BQ93097 391 aa12.01□□□□□ -0.49
TMEM39A-209ENST00000486235 ABCC8Q09428 1581 aa12□□□□□ -0.49
TMEM39A-209ENST00000486235 DNMBPQ6XZF7 1577 aa12□□□□□ -0.49
TMEM39A-209ENST00000486235 THSD4Q6ZMP0 1018 aa11.99□□□□□ -0.49
TMEM39A-209ENST00000486235 CHD1O14646 1710 aa11.98□□□□□ -0.49
TMEM39A-209ENST00000486235 ARAP1Q96P48 1450 aa11.98□□□□□ -0.49
TMEM39A-209ENST00000486235 PROX2Q3B8N5 592 aa11.98□□□□□ -0.49
TMEM39A-209ENST00000486235 COL9A1P20849 921 aa11.97□□□□□ -0.49
TMEM39A-209ENST00000486235 NBPF3Q9H094 633 aa11.96□□□□□ -0.49
TMEM39A-209ENST00000486235 TARBP1Q13395 1621 aaKnown RBP11.96□□□□□ -0.5
TMEM39A-209ENST00000486235 POLA1P09884 1462 aaPredicted RBP11.95□□□□□ -0.5
TMEM39A-209ENST00000486235 PPP1R3GB7ZBB8 358 aa11.94□□□□□ -0.5
TMEM39A-209ENST00000486235 DPYSL4O14531 572 aa11.94□□□□□ -0.5
TMEM39A-209ENST00000486235 TYW1BQ6NUM6 668 aa11.94□□□□□ -0.5
TMEM39A-209ENST00000486235 RAD54L2Q9Y4B4 1467 aa11.94□□□□□ -0.5
TMEM39A-209ENST00000486235 TDRD9Q8NDG6 1382 aaKnown RBP11.92□□□□□ -0.5
TMEM39A-209ENST00000486235 PHF14O94880 888 aa11.92□□□□□ -0.5
TMEM39A-209ENST00000486235 FBXW7Q969H0 707 aa11.9□□□□□ -0.5
TMEM39A-209ENST00000486235 RBM33Q96EV2 1170 aaKnown RBP11.9□□□□□ -0.5
TMEM39A-209ENST00000486235 SOGA1O94964 1423 aa11.89□□□□□ -0.51
TMEM39A-209ENST00000486235 CAMK2BQ13554 666 aa11.89□□□□□ -0.51
TMEM39A-209ENST00000486235 RABGEF1Q9UJ41 708 aa11.89□□□□□ -0.51
TMEM39A-209ENST00000486235 SNAPC4Q5SXM2 1469 aa11.89□□□□□ -0.51
TMEM39A-209ENST00000486235 DDX12PQ92771 950 aa11.88□□□□□ -0.51
TMEM39A-209ENST00000486235 KIAA1468Q9P260 1216 aa11.88□□□□□ -0.51
TMEM39A-209ENST00000486235 C6orf132Q5T0Z8 1188 aa11.87□□□□□ -0.51
TMEM39A-209ENST00000486235 BBXQ8WY36 941 aaPredicted RBP11.87□□□□□ -0.51
TMEM39A-209ENST00000486235 BCAMP50895 628 aa11.86□□□□□ -0.51
TMEM39A-209ENST00000486235 ANKK1Q8NFD2 765 aa11.86□□□□□ -0.51
TMEM39A-209ENST00000486235 CHMP7Q8WUX9 453 aaPredicted RBP11.86□□□□□ -0.51
TMEM39A-209ENST00000486235 FGD5Q6ZNL6 1462 aa11.85□□□□□ -0.51
TMEM39A-209ENST00000486235 EPAS1Q99814 870 aa11.84□□□□□ -0.51
TMEM39A-209ENST00000486235 SEPT9Q9UHD8 586 aaPredicted RBP11.84□□□□□ -0.51
TMEM39A-209ENST00000486235 CLASP1Q7Z460 1538 aa11.84□□□□□ -0.51
TMEM39A-209ENST00000486235 SYNJ1O43426 1573 aa11.82□□□□□ -0.52
TMEM39A-209ENST00000486235 MAGI1Q96QZ7 1491 aaPredicted RBP11.81□□□□□ -0.52
TMEM39A-209ENST00000486235 ZFRQ96KR1 1074 aaKnown RBP11.8□□□□□ -0.52
TMEM39A-209ENST00000486235 GRIN2BQ13224 1484 aa11.8□□□□□ -0.52
TMEM39A-209ENST00000486235 CUX1P39880 1505 aa11.8□□□□□ -0.52
TMEM39A-209ENST00000486235 WDR97A6NE52 1622 aa11.78□□□□□ -0.52
TMEM39A-209ENST00000486235 SYNJ2O15056 1496 aa11.78□□□□□ -0.52
TMEM39A-209ENST00000486235 A0A0G2JS52 829 aa11.78□□□□□ -0.52
TMEM39A-209ENST00000486235 IFFO2Q5TF58 517 aa11.78□□□□□ -0.52
TMEM39A-209ENST00000486235 LAPTM4BQ86VI4 370 aa11.78□□□□□ -0.52
TMEM39A-209ENST00000486235 SPRYD3Q8NCJ5 442 aa11.78□□□□□ -0.52
TMEM39A-209ENST00000486235 SOWAHBA6NEL2 793 aa11.77□□□□□ -0.53
TMEM39A-209ENST00000486235 TRIM6-TRIM34B2RNG4 842 aa11.77□□□□□ -0.53
TMEM39A-209ENST00000486235 NBR1Q14596 966 aa11.77□□□□□ -0.53
TMEM39A-209ENST00000486235 TSR1Q2NL82 804 aaKnown RBP11.76□□□□□ -0.53
TMEM39A-209ENST00000486235 WBP1LQ9NX94 342 aa11.76□□□□□ -0.53
TMEM39A-209ENST00000486235 GAPVD1Q14C86 1478 aa11.76□□□□□ -0.53
TMEM39A-209ENST00000486235 MAP3K7O43318 606 aa11.75□□□□□ -0.53
TMEM39A-209ENST00000486235 ONECUT3O60422 494 aaPredicted RBP11.74□□□□□ -0.53
TMEM39A-209ENST00000486235 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.73□□□□□ -0.53
TMEM39A-209ENST00000486235 CFAP44Q96MT7 982 aa11.72□□□□□ -0.53
TMEM39A-209ENST00000486235 PBRM1Q86U86 1689 aa11.71□□□□□ -0.53
TMEM39A-209ENST00000486235 EN1Q05925 392 aaPredicted RBP11.71□□□□□ -0.53
TMEM39A-209ENST00000486235 PDIA6Q15084 440 aa11.71□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms