RNA–Protein interactions for RNA: ENST00000476413.1

VPS50-212, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 5

Gene VPS50, Length 381 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-212ENST00000476413 KHSRPQ92945 711 aaKnown RBP eCLIP12.3□□□□□ -0.44
VPS50-212ENST00000476413 FBXW7Q969H0 707 aa12.29□□□□□ -0.44
VPS50-212ENST00000476413 PLEKHG3A1L390 1219 aa12.28□□□□□ -0.44
VPS50-212ENST00000476413 GPR153Q6NV75 609 aa12.28□□□□□ -0.44
VPS50-212ENST00000476413 NUDT7P0C024 238 aa12.27□□□□□ -0.45
VPS50-212ENST00000476413 DOK7Q18PE1 504 aa12.27□□□□□ -0.45
VPS50-212ENST00000476413 ARSIQ5FYB1 569 aa12.27□□□□□ -0.45
VPS50-212ENST00000476413 ERICH6Q7L0X2 663 aa12.27□□□□□ -0.45
VPS50-212ENST00000476413 REPIN1Q9BWE0 567 aaKnown RBP12.26□□□□□ -0.45
VPS50-212ENST00000476413 DAXXQ9UER7 740 aaPredicted RBP12.26□□□□□ -0.45
VPS50-212ENST00000476413 PHOX2BQ99453 314 aa12.24□□□□□ -0.45
VPS50-212ENST00000476413 ZSWIM6Q9HCJ5 1215 aa12.24□□□□□ -0.45
VPS50-212ENST00000476413 C6orf132Q5T0Z8 1188 aa12.23□□□□□ -0.45
VPS50-212ENST00000476413 C14orf37Q86TY3 774 aa12.23□□□□□ -0.45
VPS50-212ENST00000476413 ZNF454Q8N9F8 522 aa12.23□□□□□ -0.45
VPS50-212ENST00000476413 ZDHHC16Q969W1 377 aa12.23□□□□□ -0.45
VPS50-212ENST00000476413 TMUB1Q9BVT8 246 aa12.23□□□□□ -0.45
VPS50-212ENST00000476413 ADAM33Q9BZ11 813 aa12.22□□□□□ -0.45
VPS50-212ENST00000476413 TTLL12Q14166 644 aaPredicted RBP12.21□□□□□ -0.45
VPS50-212ENST00000476413 GIGYF2Q6Y7W6 1299 aaKnown RBP12.21□□□□□ -0.45
VPS50-212ENST00000476413 MS4A1P11836 297 aa12.2□□□□□ -0.46
VPS50-212ENST00000476413 TTC13Q8NBP0 860 aa12.2□□□□□ -0.46
VPS50-212ENST00000476413 DDRGK1Q96HY6 314 aa12.2□□□□□ -0.46
VPS50-212ENST00000476413 SCUBE2Q9NQ36 999 aa12.19□□□□□ -0.46
VPS50-212ENST00000476413 FAM161AQ3B820 660 aa12.18□□□□□ -0.46
VPS50-212ENST00000476413 PADI6Q6TGC4 694 aa12.18□□□□□ -0.46
VPS50-212ENST00000476413 RIMBP2O15034 1052 aa12.17□□□□□ -0.46
VPS50-212ENST00000476413 MAMSTRQ6ZN01 415 aa12.17□□□□□ -0.46
VPS50-212ENST00000476413 CERKQ8TCT0 537 aa12.17□□□□□ -0.46
VPS50-212ENST00000476413 LHX6Q9UPM6 363 aa12.17□□□□□ -0.46
VPS50-212ENST00000476413 RBM27Q9P2N5 1060 aaKnown RBP12.16□□□□□ -0.46
VPS50-212ENST00000476413 METTL3Q86U44 580 aaKnown RBP12.15□□□□□ -0.46
VPS50-212ENST00000476413 ADGRG1Q9Y653 693 aa12.15□□□□□ -0.46
VPS50-212ENST00000476413 MDM2Q00987 491 aaPredicted RBP12.14□□□□□ -0.47
VPS50-212ENST00000476413 CLCN1P35523 988 aa12.13□□□□□ -0.47
VPS50-212ENST00000476413 PXYLP1Q8TE99 480 aa12.13□□□□□ -0.47
VPS50-212ENST00000476413 GPCPD1Q9NPB8 672 aa12.13□□□□□ -0.47
VPS50-212ENST00000476413 ZNF710Q8N1W2 664 aa12.12□□□□□ -0.47
VPS50-212ENST00000476413 PRSS12P56730 875 aa12.11□□□□□ -0.47
VPS50-212ENST00000476413 NLRP7Q8WX94 980 aa12.11□□□□□ -0.47
VPS50-212ENST00000476413 FAM198AQ9UFP1 575 aa12.11□□□□□ -0.47
VPS50-212ENST00000476413 OATP04181 439 aa12.1□□□□□ -0.47
VPS50-212ENST00000476413 COL9A1P20849 921 aa12.1□□□□□ -0.47
VPS50-212ENST00000476413 GOPCQ9HD26 462 aa12.1□□□□□ -0.47
VPS50-212ENST00000476413 CDCA7LQ96GN5 454 aa12.09□□□□□ -0.47
VPS50-212ENST00000476413 BCL2L12Q9HB09 334 aa12.09□□□□□ -0.47
VPS50-212ENST00000476413 HOXB1P14653 301 aaPredicted RBP12.08□□□□□ -0.48
VPS50-212ENST00000476413 SSTR3P32745 418 aaPredicted RBP12.07□□□□□ -0.48
VPS50-212ENST00000476413 PPP4R3BQ5MIZ7 849 aa12.07□□□□□ -0.48
VPS50-212ENST00000476413 FAM217BQ9NTX9 383 aaPredicted RBP12.07□□□□□ -0.48
VPS50-212ENST00000476413 PSDA5PKW4 1024 aaPredicted RBP12.05□□□□□ -0.48
VPS50-212ENST00000476413 OTUD5Q96G74 571 aa12.05□□□□□ -0.48
VPS50-212ENST00000476413 C3orf80F5H4A9 247 aa12.04□□□□□ -0.48
VPS50-212ENST00000476413 TSKSQ9UJT2 592 aa12.04□□□□□ -0.48
VPS50-212ENST00000476413 PPP1R3GB7ZBB8 358 aa12.03□□□□□ -0.48
VPS50-212ENST00000476413 SNPHO15079 494 aa12.02□□□□□ -0.49
VPS50-212ENST00000476413 SH3D19Q5HYK7 790 aa12.01□□□□□ -0.49
VPS50-212ENST00000476413 EYA1Q99502 592 aa12.01□□□□□ -0.49
VPS50-212ENST00000476413 PTPREP23469 700 aa12□□□□□ -0.49
VPS50-212ENST00000476413 RBM46Q8TBY0 533 aaKnown RBP12□□□□□ -0.49
VPS50-212ENST00000476413 BEGAINQ9BUH8 593 aa12□□□□□ -0.49
VPS50-212ENST00000476413 ONECUT3O60422 494 aaPredicted RBP11.97□□□□□ -0.49
VPS50-212ENST00000476413 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.96□□□□□ -0.49
VPS50-212ENST00000476413 RCCD1A6NED2 376 aa11.96□□□□□ -0.49
VPS50-212ENST00000476413 PCMTD1Q96MG8 357 aaPredicted RBP11.96□□□□□ -0.49
VPS50-212ENST00000476413 TRIM6-TRIM34B2RNG4 842 aa11.95□□□□□ -0.5
VPS50-212ENST00000476413 SKIV2LQ15477 1246 aaKnown RBP11.95□□□□□ -0.5
VPS50-212ENST00000476413 NUDT18Q6ZVK8 323 aa11.94□□□□□ -0.5
VPS50-212ENST00000476413 RSPH6AQ9H0K4 717 aa11.93□□□□□ -0.5
VPS50-212ENST00000476413 PROX2Q3B8N5 592 aa11.92□□□□□ -0.5
VPS50-212ENST00000476413 MYSM1Q5VVJ2 828 aa11.92□□□□□ -0.5
VPS50-212ENST00000476413 TATDN2Q93075 761 aa11.92□□□□□ -0.5
VPS50-212ENST00000476413 KCNK17Q96T54 332 aa11.92□□□□□ -0.5
VPS50-212ENST00000476413 ZMYND15Q9H091 742 aa11.92□□□□□ -0.5
VPS50-212ENST00000476413 SUPT5HO00267 1087 aaKnown RBP11.91□□□□□ -0.5
VPS50-212ENST00000476413 PROCA1Q8NCQ7 364 aaPredicted RBP11.91□□□□□ -0.5
VPS50-212ENST00000476413 NBPF26B4DH59 902 aa11.9□□□□□ -0.5
VPS50-212ENST00000476413 PNMA3Q9UL41 463 aa11.9□□□□□ -0.5
VPS50-212ENST00000476413 CD46P15529 392 aa11.89□□□□□ -0.51
VPS50-212ENST00000476413 POTEEQ6S8J3 1075 aa11.89□□□□□ -0.51
VPS50-212ENST00000476413 GNL3Q9BVP2 549 aaKnown RBP eCLIP11.89□□□□□ -0.51
VPS50-212ENST00000476413 TMEM134Q9H6X4 195 aa11.89□□□□□ -0.51
VPS50-212ENST00000476413 DNAJB2P25686 324 aa11.88□□□□□ -0.51
VPS50-212ENST00000476413 ZBED2Q9BTP6 218 aa11.88□□□□□ -0.51
VPS50-212ENST00000476413 TBC1D2Q9BYX2 928 aa11.88□□□□□ -0.51
VPS50-212ENST00000476413 POLR3EQ9NVU0 708 aa11.88□□□□□ -0.51
VPS50-212ENST00000476413 SMAPO00193 183 aa11.87□□□□□ -0.51
VPS50-212ENST00000476413 FLIIQ13045 1269 aa11.87□□□□□ -0.51
VPS50-212ENST00000476413 PACS2Q86VP3 889 aa11.87□□□□□ -0.51
VPS50-212ENST00000476413 PSEN2P49810 448 aa11.86□□□□□ -0.51
VPS50-212ENST00000476413 FBXO31Q5XUX0 539 aaPredicted RBP11.85□□□□□ -0.51
VPS50-212ENST00000476413 SPIRE2Q8WWL2 714 aa11.85□□□□□ -0.51
VPS50-212ENST00000476413 CLK2P49760 499 aaKnown RBP11.84□□□□□ -0.51
VPS50-212ENST00000476413 KIAA1468Q9P260 1216 aa11.83□□□□□ -0.52
VPS50-212ENST00000476413 LIMD1Q9UGP4 676 aa11.83□□□□□ -0.52
VPS50-212ENST00000476413 VARS2Q5ST30 1063 aaKnown RBP11.82□□□□□ -0.52
VPS50-212ENST00000476413 DDX11L8A8MPP1 907 aa11.81□□□□□ -0.52
VPS50-212ENST00000476413 ST18O60284 1047 aa11.81□□□□□ -0.52
VPS50-212ENST00000476413 MCM6Q14566 821 aa11.81□□□□□ -0.52
VPS50-212ENST00000476413 DIXDC1Q155Q3 683 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms