RNA–Protein interactions for RNA: ENST00000469300.6

LIMS2-213, Transcript of LIM zinc finger domain containing 2, humanhuman

TSL 2

Gene LIMS2, Length 4,807 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS2-213ENST00000469300 RGS3P49796 1198 aa19.2■□□□□ 0.66
LIMS2-213ENST00000469300 GOLGA2Q08379 1002 aa19.2■□□□□ 0.66
LIMS2-213ENST00000469300 ARAP1Q96P48 1450 aa19.19■□□□□ 0.66
LIMS2-213ENST00000469300 MIA2Q96PC5 1412 aa19.19■□□□□ 0.66
LIMS2-213ENST00000469300 STK31Q9BXU1 1019 aa19.19■□□□□ 0.66
LIMS2-213ENST00000469300 TROQ12816 1431 aaPredicted RBP19.19■□□□□ 0.66
LIMS2-213ENST00000469300 USP47Q96K76 1375 aa19.18■□□□□ 0.66
LIMS2-213ENST00000469300 RCAN3Q9UKA8 241 aa19.17■□□□□ 0.66
LIMS2-213ENST00000469300 MYBBP1AQ9BQG0 1328 aaKnown RBP19.16■□□□□ 0.66
LIMS2-213ENST00000469300 COG3Q96JB2 828 aa19.16■□□□□ 0.66
LIMS2-213ENST00000469300 PANK3Q9H999 370 aa19.16■□□□□ 0.66
LIMS2-213ENST00000469300 EHBP1L1Q8N3D4 1523 aa19.15■□□□□ 0.66
LIMS2-213ENST00000469300 AFAP1Q8N556 730 aa19.14■□□□□ 0.66
LIMS2-213ENST00000469300 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.14■□□□□ 0.65
LIMS2-213ENST00000469300 KCNJ4P48050 445 aa19.13■□□□□ 0.65
LIMS2-213ENST00000469300 RTN4Q9NQC3 1192 aaKnown RBP19.12■□□□□ 0.65
LIMS2-213ENST00000469300 NGEFQ8N5V2 710 aa19.11■□□□□ 0.65
LIMS2-213ENST00000469300 PEG3Q9GZU2 1588 aa19.11■□□□□ 0.65
LIMS2-213ENST00000469300 CENPJQ9HC77 1338 aaPredicted RBP19.11■□□□□ 0.65
LIMS2-213ENST00000469300 HECW1Q76N89 1606 aa19.1■□□□□ 0.65
LIMS2-213ENST00000469300 NUTM2FA1L443 756 aa19.1■□□□□ 0.65
LIMS2-213ENST00000469300 FGD1P98174 961 aa19.1■□□□□ 0.65
LIMS2-213ENST00000469300 RWDD1Q9H446 243 aaPredicted RBP19.1■□□□□ 0.65
LIMS2-213ENST00000469300 TRIM44Q96DX7 344 aaPredicted RBP19.1■□□□□ 0.65
LIMS2-213ENST00000469300 CCDC9Q9Y3X0 531 aaKnown RBP19.1■□□□□ 0.65
LIMS2-213ENST00000469300 MINK1Q8N4C8 1332 aaPredicted RBP19.1■□□□□ 0.65
LIMS2-213ENST00000469300 HFM1A2PYH4 1435 aa19.09■□□□□ 0.65
LIMS2-213ENST00000469300 MCCP23508 829 aa19.09■□□□□ 0.65
LIMS2-213ENST00000469300 RRBP1Q9P2E9 1410 aaKnown RBP19.09■□□□□ 0.65
LIMS2-213ENST00000469300 ZRSR1Q15695 479 aaKnown RBP19.08■□□□□ 0.65
LIMS2-213ENST00000469300 MAGI1Q96QZ7 1491 aaPredicted RBP19.06■□□□□ 0.64
LIMS2-213ENST00000469300 SMC4Q9NTJ3 1288 aa19.06■□□□□ 0.64
LIMS2-213ENST00000469300 HMMRO75330 724 aa19.05■□□□□ 0.64
LIMS2-213ENST00000469300 C9orf84Q5VXU9 1444 aa19.05■□□□□ 0.64
LIMS2-213ENST00000469300 DEKP35659 375 aaKnown RBP19.04■□□□□ 0.64
LIMS2-213ENST00000469300 CDK11BP21127 795 aaKnown RBP19.04■□□□□ 0.64
LIMS2-213ENST00000469300 ITPRIPQ8IWB1 547 aa19.04■□□□□ 0.64
LIMS2-213ENST00000469300 PMFBP1Q8TBY8 1022 aa19.04■□□□□ 0.64
LIMS2-213ENST00000469300 PRKRIP1Q9H875 184 aaPredicted RBP19.04■□□□□ 0.64
LIMS2-213ENST00000469300 RBM19Q9Y4C8 960 aaKnown RBP19.03■□□□□ 0.64
LIMS2-213ENST00000469300 LTV1Q96GA3 475 aaPredicted RBP19.03■□□□□ 0.64
LIMS2-213ENST00000469300 SLC52A1Q9NWF4 448 aa19.02■□□□□ 0.64
LIMS2-213ENST00000469300 NAP1L5Q96NT1 182 aaPredicted RBP19.02■□□□□ 0.64
LIMS2-213ENST00000469300 DNAJC5BQ9UF47 199 aa19.02■□□□□ 0.63
LIMS2-213ENST00000469300 IQGAP2Q13576 1575 aa19.01■□□□□ 0.63
LIMS2-213ENST00000469300 CUL7Q14999 1698 aa19.01■□□□□ 0.63
LIMS2-213ENST00000469300 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP19.01■□□□□ 0.63
LIMS2-213ENST00000469300 HSP90AB1P08238 724 aaKnown RBP19■□□□□ 0.63
LIMS2-213ENST00000469300 TSHZ2Q9NRE2 1034 aa19■□□□□ 0.63
LIMS2-213ENST00000469300 NOP58Q9Y2X3 529 aaKnown RBP19■□□□□ 0.63
LIMS2-213ENST00000469300 ZNF330Q9Y3S2 320 aaPredicted RBP19■□□□□ 0.63
LIMS2-213ENST00000469300 CCDC146Q8IYE0 955 aa18.99■□□□□ 0.63
LIMS2-213ENST00000469300 SCAPERQ9BY12 1400 aa18.99■□□□□ 0.63
LIMS2-213ENST00000469300 PSME1Q06323 249 aa18.99■□□□□ 0.63
LIMS2-213ENST00000469300 TMX4Q9H1E5 349 aaPredicted RBP18.99■□□□□ 0.63
LIMS2-213ENST00000469300 C1orf141Q5JVX7 400 aa18.99■□□□□ 0.63
LIMS2-213ENST00000469300 KIAA1211Q6ZU35 1233 aa18.98■□□□□ 0.63
LIMS2-213ENST00000469300 TIAM1Q13009 1591 aa18.97■□□□□ 0.63
LIMS2-213ENST00000469300 THEMISQ8N1K5 641 aaPredicted RBP18.97■□□□□ 0.63
LIMS2-213ENST00000469300 POGZQ7Z3K3 1410 aa18.97■□□□□ 0.63
LIMS2-213ENST00000469300 ATF3P18847 181 aa18.97■□□□□ 0.63
LIMS2-213ENST00000469300 HSCBQ8IWL3 235 aa18.97■□□□□ 0.63
LIMS2-213ENST00000469300 DIAPH1O60610 1272 aaKnown RBP18.96■□□□□ 0.63
LIMS2-213ENST00000469300 E9PSI1 815 aa18.96■□□□□ 0.63
LIMS2-213ENST00000469300 GRIN2AQ12879 1464 aa18.96■□□□□ 0.63
LIMS2-213ENST00000469300 EVA1CP58658 441 aa18.95■□□□□ 0.62
LIMS2-213ENST00000469300 GPATCH3Q96I76 525 aa18.95■□□□□ 0.62
LIMS2-213ENST00000469300 EPRSP07814 1512 aaKnown RBP18.95■□□□□ 0.62
LIMS2-213ENST00000469300 TEFQ10587 303 aa18.95■□□□□ 0.62
LIMS2-213ENST00000469300 KIAA1107Q9UPP5 1409 aa18.94■□□□□ 0.62
LIMS2-213ENST00000469300 TCERG1O14776 1098 aaKnown RBP18.93■□□□□ 0.62
LIMS2-213ENST00000469300 TXNDC2Q86VQ3 553 aa18.93■□□□□ 0.62
LIMS2-213ENST00000469300 TAF7LQ5H9L4 462 aa18.93■□□□□ 0.62
LIMS2-213ENST00000469300 CCDC7Q96M83 1385 aa18.92■□□□□ 0.62
LIMS2-213ENST00000469300 RPGRIP1LQ68CZ1 1315 aa18.92■□□□□ 0.62
LIMS2-213ENST00000469300 SUPT6HQ7KZ85 1726 aaKnown RBP18.91■□□□□ 0.62
LIMS2-213ENST00000469300 GORABQ5T7V8 394 aa18.9■□□□□ 0.62
LIMS2-213ENST00000469300 NAP1L2Q9ULW6 460 aaPredicted RBP18.9■□□□□ 0.62
LIMS2-213ENST00000469300 ROCK1Q13464 1354 aa18.89■□□□□ 0.62
LIMS2-213ENST00000469300 APBB1O00213 710 aa18.89■□□□□ 0.62
LIMS2-213ENST00000469300 DAPK1P53355 1430 aa18.89■□□□□ 0.62
LIMS2-213ENST00000469300 SLC4A10Q6U841 1118 aa18.89■□□□□ 0.61
LIMS2-213ENST00000469300 URB2Q14146 1524 aaKnown RBP18.89■□□□□ 0.61
LIMS2-213ENST00000469300 KIF7Q2M1P5 1343 aa18.87■□□□□ 0.61
LIMS2-213ENST00000469300 CFAP70Q5T0N1 1121 aa18.87■□□□□ 0.61
LIMS2-213ENST00000469300 ZBED9Q6R2W3 1325 aa18.87■□□□□ 0.61
LIMS2-213ENST00000469300 AEBP2Q6ZN18 517 aaPredicted RBP18.87■□□□□ 0.61
LIMS2-213ENST00000469300 ANKRD30BQ9BXX2 1392 aa18.86■□□□□ 0.61
LIMS2-213ENST00000469300 RAPGEF3O95398 923 aa18.86■□□□□ 0.61
LIMS2-213ENST00000469300 RRP7AQ9Y3A4 280 aaKnown RBP18.86■□□□□ 0.61
LIMS2-213ENST00000469300 TTC5Q8N0Z6 440 aa18.86■□□□□ 0.61
LIMS2-213ENST00000469300 CHMP3Q9Y3E7 222 aa18.86■□□□□ 0.61
LIMS2-213ENST00000469300 WASHC2AQ641Q2 1341 aa18.85■□□□□ 0.61
LIMS2-213ENST00000469300 GOLGA6L4A6NEF3 574 aa18.85■□□□□ 0.61
LIMS2-213ENST00000469300 CLUAP1Q96AJ1 413 aa18.85■□□□□ 0.61
LIMS2-213ENST00000469300 GTF2E1P29083 439 aaPredicted RBP18.85■□□□□ 0.61
LIMS2-213ENST00000469300 TMEM132EQ6IEE7 984 aa18.85■□□□□ 0.61
LIMS2-213ENST00000469300 GPRASP1Q5JY77 1395 aa18.85■□□□□ 0.61
LIMS2-213ENST00000469300 CCDC141Q6ZP82 1450 aa18.84■□□□□ 0.61
LIMS2-213ENST00000469300 CD109Q6YHK3 1445 aa18.84■□□□□ 0.61
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms