RNA–Protein interactions for RNA: ENST00000467077.1

XRN1-206, Transcript of 5'-3' exoribonuclease 1, humanhuman

TSL 3

Gene XRN1, Length 674 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
XRN1-206ENST00000467077 NYAP1Q6ZVC0 841 aa13.49□□□□□ -0.25
XRN1-206ENST00000467077 LAPTM4BQ86VI4 370 aa13.49□□□□□ -0.25
XRN1-206ENST00000467077 PHF14O94880 888 aa13.46□□□□□ -0.25
XRN1-206ENST00000467077 COL9A1P20849 921 aa13.46□□□□□ -0.25
XRN1-206ENST00000467077 SOWAHBA6NEL2 793 aa13.45□□□□□ -0.26
XRN1-206ENST00000467077 GTPBP6O43824 516 aaPredicted RBP13.45□□□□□ -0.26
XRN1-206ENST00000467077 EMILIN3Q9NT22 766 aa13.45□□□□□ -0.26
XRN1-206ENST00000467077 ZFRQ96KR1 1074 aaKnown RBP13.43□□□□□ -0.26
XRN1-206ENST00000467077 Q6ZNB5 142 aa13.42□□□□□ -0.26
XRN1-206ENST00000467077 KIAA1468Q9P260 1216 aa13.42□□□□□ -0.26
XRN1-206ENST00000467077 KCNC4Q03721 635 aa13.4□□□□□ -0.26
XRN1-206ENST00000467077 ONECUT3O60422 494 aaPredicted RBP13.38□□□□□ -0.27
XRN1-206ENST00000467077 EPAS1Q99814 870 aa13.38□□□□□ -0.27
XRN1-206ENST00000467077 WBP1LQ9NX94 342 aa13.38□□□□□ -0.27
XRN1-206ENST00000467077 SEPT9Q9UHD8 586 aaPredicted RBP13.38□□□□□ -0.27
XRN1-206ENST00000467077 DCAF8L2P0C7V8 631 aa13.34□□□□□ -0.27
XRN1-206ENST00000467077 FAM98CQ17RN3 349 aaKnown RBP13.34□□□□□ -0.27
XRN1-206ENST00000467077 C6orf132Q5T0Z8 1188 aa13.34□□□□□ -0.27
XRN1-206ENST00000467077 LRCH3Q96II8 777 aa13.34□□□□□ -0.27
XRN1-206ENST00000467077 CDKN2AIPQ9NXV6 580 aaPredicted RBP13.34□□□□□ -0.27
XRN1-206ENST00000467077 TRIM6-TRIM34B2RNG4 842 aa13.33□□□□□ -0.28
XRN1-206ENST00000467077 TSR3Q9UJK0 312 aaKnown RBP13.32□□□□□ -0.28
XRN1-206ENST00000467077 HPS5Q9UPZ3 1129 aa13.32□□□□□ -0.28
XRN1-206ENST00000467077 LAPTM4AQ15012 233 aa13.29□□□□□ -0.28
XRN1-206ENST00000467077 RBM33Q96EV2 1170 aaKnown RBP13.29□□□□□ -0.28
XRN1-206ENST00000467077 DPYSL4O14531 572 aa13.28□□□□□ -0.28
XRN1-206ENST00000467077 CADPS2Q86UW7 1296 aa13.25□□□□□ -0.29
XRN1-206ENST00000467077 CAMK2BQ13554 666 aa13.23□□□□□ -0.29
XRN1-206ENST00000467077 PACS2Q86VP3 889 aa13.23□□□□□ -0.29
XRN1-206ENST00000467077 DDX12PQ92771 950 aa13.23□□□□□ -0.29
XRN1-206ENST00000467077 MAP3K7O43318 606 aa13.2□□□□□ -0.3
XRN1-206ENST00000467077 PPP4CP60510 307 aa13.2□□□□□ -0.3
XRN1-206ENST00000467077 NBR1Q14596 966 aa13.2□□□□□ -0.3
XRN1-206ENST00000467077 EN1Q05925 392 aaPredicted RBP13.17□□□□□ -0.3
XRN1-206ENST00000467077 GFRA3O60609 400 aa13.16□□□□□ -0.3
XRN1-206ENST00000467077 TSKSQ9UJT2 592 aa13.15□□□□□ -0.3
XRN1-206ENST00000467077 TSR1Q2NL82 804 aaKnown RBP13.13□□□□□ -0.31
XRN1-206ENST00000467077 TRAF7Q6Q0C0 670 aa13.12□□□□□ -0.31
XRN1-206ENST00000467077 SAMD7Q7Z3H4 446 aa13.11□□□□□ -0.31
XRN1-206ENST00000467077 PRKD2Q9BZL6 878 aa13.11□□□□□ -0.31
XRN1-206ENST00000467077 PDIA6Q15084 440 aa13.09□□□□□ -0.31
XRN1-206ENST00000467077 NBPF26B4DH59 902 aa13.08□□□□□ -0.32
XRN1-206ENST00000467077 TJAP1Q5JTD0 557 aa13.08□□□□□ -0.32
XRN1-206ENST00000467077 CDCA7LQ96GN5 454 aa13.08□□□□□ -0.32
XRN1-206ENST00000467077 IL21Q9HBE4 155 aa13.08□□□□□ -0.32
XRN1-206ENST00000467077 SMAPO00193 183 aa13.07□□□□□ -0.32
XRN1-206ENST00000467077 NRG2O14511 850 aaPredicted RBP13.07□□□□□ -0.32
XRN1-206ENST00000467077 RNF40O75150 1001 aa13.07□□□□□ -0.32
XRN1-206ENST00000467077 CERKQ8TCT0 537 aa13.07□□□□□ -0.32
XRN1-206ENST00000467077 MTRQ99707 1265 aa13.07□□□□□ -0.32
XRN1-206ENST00000467077 SPDYE16A6NNV3 312 aaPredicted RBP13.06□□□□□ -0.32
XRN1-206ENST00000467077 PRSS12P56730 875 aa13.05□□□□□ -0.32
XRN1-206ENST00000467077 HDGFP51858 240 aaKnown RBP13.04□□□□□ -0.32
XRN1-206ENST00000467077 V9GY48 417 aaPredicted RBP13.04□□□□□ -0.32
XRN1-206ENST00000467077 PPP1R18Q6NYC8 613 aa13.03□□□□□ -0.32
XRN1-206ENST00000467077 PNMA3Q9UL41 463 aa13.03□□□□□ -0.32
XRN1-206ENST00000467077 LCE2BO14633 110 aa13.01□□□□□ -0.33
XRN1-206ENST00000467077 TATDN2Q93075 761 aa13.01□□□□□ -0.33
XRN1-206ENST00000467077 NECTIN2Q92692 538 aa13□□□□□ -0.33
XRN1-206ENST00000467077 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.99□□□□□ -0.33
XRN1-206ENST00000467077 GGCXP38435 758 aa12.97□□□□□ -0.33
XRN1-206ENST00000467077 FAM198AQ9UFP1 575 aa12.97□□□□□ -0.33
XRN1-206ENST00000467077 GRXCR2A6NFK2 248 aa12.96□□□□□ -0.33
XRN1-206ENST00000467077 ZNF516Q92618 1163 aa12.94□□□□□ -0.34
XRN1-206ENST00000467077 PDZRN3Q9UPQ7 1066 aa12.94□□□□□ -0.34
XRN1-206ENST00000467077 NUDT18Q6ZVK8 323 aa12.93□□□□□ -0.34
XRN1-206ENST00000467077 RBM27Q9P2N5 1060 aaKnown RBP12.93□□□□□ -0.34
XRN1-206ENST00000467077 SLC4A3P48751 1232 aa12.92□□□□□ -0.34
XRN1-206ENST00000467077 APLP1P51693 650 aa12.92□□□□□ -0.34
XRN1-206ENST00000467077 C3orf80F5H4A9 247 aa12.9□□□□□ -0.34
XRN1-206ENST00000467077 E2F4Q16254 413 aa12.9□□□□□ -0.34
XRN1-206ENST00000467077 SLF2Q8IX21 1173 aa12.89□□□□□ -0.35
XRN1-206ENST00000467077 BBXQ8WY36 941 aaPredicted RBP12.89□□□□□ -0.35
XRN1-206ENST00000467077 CDHR5Q9HBB8 845 aa12.89□□□□□ -0.35
XRN1-206ENST00000467077 COPS2P61201 443 aa12.88□□□□□ -0.35
XRN1-206ENST00000467077 ZNF787Q6DD87 383 aa12.88□□□□□ -0.35
XRN1-206ENST00000467077 PRIM1P49642 420 aaKnown RBP12.87□□□□□ -0.35
XRN1-206ENST00000467077 WDR70Q9NW82 654 aa12.87□□□□□ -0.35
XRN1-206ENST00000467077 NKX2-3Q8TAU0 364 aa12.86□□□□□ -0.35
XRN1-206ENST00000467077 SWT1Q5T5J6 900 aaKnown RBP12.84□□□□□ -0.35
XRN1-206ENST00000467077 TMUB1Q9BVT8 246 aa12.84□□□□□ -0.35
XRN1-206ENST00000467077 PRR14Q9BWN1 585 aa12.84□□□□□ -0.35
XRN1-206ENST00000467077 ARIH1Q9Y4X5 557 aaPredicted RBP12.83□□□□□ -0.36
XRN1-206ENST00000467077 OSBPP22059 807 aa12.81□□□□□ -0.36
XRN1-206ENST00000467077 PADI6Q6TGC4 694 aa12.81□□□□□ -0.36
XRN1-206ENST00000467077 SPRYD3Q8NCJ5 442 aa12.8□□□□□ -0.36
XRN1-206ENST00000467077 ZPR1O75312 459 aa12.79□□□□□ -0.36
XRN1-206ENST00000467077 ZBTB4Q9P1Z0 1013 aaPredicted RBP12.77□□□□□ -0.37
XRN1-206ENST00000467077 PCDHB3Q9Y5E6 796 aa12.77□□□□□ -0.37
XRN1-206ENST00000467077 TTC13Q8NBP0 860 aa12.75□□□□□ -0.37
XRN1-206ENST00000467077 PKDCCQ504Y2 493 aa12.74□□□□□ -0.37
XRN1-206ENST00000467077 SLC19A1P41440 591 aa12.73□□□□□ -0.37
XRN1-206ENST00000467077 ZNF775Q96BV0 537 aaPredicted RBP12.72□□□□□ -0.37
XRN1-206ENST00000467077 RNF223E7ERA6 249 aa12.7□□□□□ -0.38
XRN1-206ENST00000467077 BLOC1S3Q6QNY0 202 aa12.69□□□□□ -0.38
XRN1-206ENST00000467077 NPDC1Q9NQX5 325 aaPredicted RBP12.68□□□□□ -0.38
XRN1-206ENST00000467077 EYA1Q99502 592 aa12.67□□□□□ -0.38
XRN1-206ENST00000467077 DGAT1O75907 488 aa12.66□□□□□ -0.38
XRN1-206ENST00000467077 TLL1O43897 1013 aa12.65□□□□□ -0.38
XRN1-206ENST00000467077 DNAJB2P25686 324 aa12.65□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms