RNA–Protein interactions for RNA: ENST00000460408.5

RFC4-211, Transcript of replication factor C subunit 4, humanhuman

TSL 2

Gene RFC4, Length 628 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFC4-211ENST00000460408 TYW1BQ6NUM6 668 aa8.9□□□□□ -0.98
RFC4-211ENST00000460408 CADPS2Q86UW7 1296 aa8.9□□□□□ -0.98
RFC4-211ENST00000460408 PROX2Q3B8N5 592 aa8.89□□□□□ -0.99
RFC4-211ENST00000460408 CAMK2BQ13554 666 aa8.87□□□□□ -0.99
RFC4-211ENST00000460408 ANKK1Q8NFD2 765 aa8.87□□□□□ -0.99
RFC4-211ENST00000460408 LAPTM4BQ86VI4 370 aa8.86□□□□□ -0.99
RFC4-211ENST00000460408 ONECUT3O60422 494 aaPredicted RBP8.85□□□□□ -0.99
RFC4-211ENST00000460408 DCAF8L2P0C7V8 631 aa8.85□□□□□ -0.99
RFC4-211ENST00000460408 EPAS1Q99814 870 aa8.85□□□□□ -0.99
RFC4-211ENST00000460408 ITGBL1O95965 494 aaPredicted RBP8.84□□□□□ -0.99
RFC4-211ENST00000460408 SOWAHBA6NEL2 793 aa8.83□□□□□ -1
RFC4-211ENST00000460408 KIAA1468Q9P260 1216 aa8.83□□□□□ -1
RFC4-211ENST00000460408 BCAMP50895 628 aa8.82□□□□□ -1
RFC4-211ENST00000460408 C6orf132Q5T0Z8 1188 aa8.82□□□□□ -1
RFC4-211ENST00000460408 NYAP1Q6ZVC0 841 aa8.81□□□□□ -1
RFC4-211ENST00000460408 ZFRQ96KR1 1074 aaKnown RBP8.81□□□□□ -1
RFC4-211ENST00000460408 DPYSL4O14531 572 aa8.8□□□□□ -1
RFC4-211ENST00000460408 IRX2Q9BZI1 471 aaPredicted RBP8.8□□□□□ -1
RFC4-211ENST00000460408 SLC24A1O60721 1099 aa8.79□□□□□ -1
RFC4-211ENST00000460408 TRIM6-TRIM34B2RNG4 842 aa8.78□□□□□ -1
RFC4-211ENST00000460408 SEPT9Q9UHD8 586 aaPredicted RBP8.77□□□□□ -1.01
RFC4-211ENST00000460408 FAM98CQ17RN3 349 aaKnown RBP8.76□□□□□ -1.01
RFC4-211ENST00000460408 WBP1LQ9NX94 342 aa8.76□□□□□ -1.01
RFC4-211ENST00000460408 DDX12PQ92771 950 aa8.75□□□□□ -1.01
RFC4-211ENST00000460408 RBM33Q96EV2 1170 aaKnown RBP8.75□□□□□ -1.01
RFC4-211ENST00000460408 KCNC4Q03721 635 aa8.72□□□□□ -1.01
RFC4-211ENST00000460408 EN1Q05925 392 aaPredicted RBP8.72□□□□□ -1.01
RFC4-211ENST00000460408 CDKN2AIPQ9NXV6 580 aaPredicted RBP8.72□□□□□ -1.01
RFC4-211ENST00000460408 TSR3Q9UJK0 312 aaKnown RBP8.72□□□□□ -1.01
RFC4-211ENST00000460408 PDIA6Q15084 440 aa8.71□□□□□ -1.02
RFC4-211ENST00000460408 BBXQ8WY36 941 aaPredicted RBP8.71□□□□□ -1.02
RFC4-211ENST00000460408 LRCH3Q96II8 777 aa8.71□□□□□ -1.02
RFC4-211ENST00000460408 TSKSQ9UJT2 592 aa8.7□□□□□ -1.02
RFC4-211ENST00000460408 HPS5Q9UPZ3 1129 aa8.7□□□□□ -1.02
RFC4-211ENST00000460408 SPDYE16A6NNV3 312 aaPredicted RBP8.69□□□□□ -1.02
RFC4-211ENST00000460408 NBR1Q14596 966 aa8.69□□□□□ -1.02
RFC4-211ENST00000460408 TSR1Q2NL82 804 aaKnown RBP8.69□□□□□ -1.02
RFC4-211ENST00000460408 PACS2Q86VP3 889 aa8.69□□□□□ -1.02
RFC4-211ENST00000460408 MAP3K7O43318 606 aa8.68□□□□□ -1.02
RFC4-211ENST00000460408 ARIH1Q9Y4X5 557 aaPredicted RBP8.65□□□□□ -1.02
RFC4-211ENST00000460408 PRSS12P56730 875 aa8.64□□□□□ -1.03
RFC4-211ENST00000460408 CDCA7LQ96GN5 454 aa8.64□□□□□ -1.03
RFC4-211ENST00000460408 PPP4CP60510 307 aa8.63□□□□□ -1.03
RFC4-211ENST00000460408 PLCB2Q00722 1185 aa8.63□□□□□ -1.03
RFC4-211ENST00000460408 CERKQ8TCT0 537 aa8.63□□□□□ -1.03
RFC4-211ENST00000460408 FAM198AQ9UFP1 575 aa8.63□□□□□ -1.03
RFC4-211ENST00000460408 PRIM1P49642 420 aaKnown RBP8.62□□□□□ -1.03
RFC4-211ENST00000460408 E2F4Q16254 413 aa8.62□□□□□ -1.03
RFC4-211ENST00000460408 TJAP1Q5JTD0 557 aa8.61□□□□□ -1.03
RFC4-211ENST00000460408 Q6ZNB5 142 aa8.61□□□□□ -1.03
RFC4-211ENST00000460408 SAMD7Q7Z3H4 446 aa8.61□□□□□ -1.03
RFC4-211ENST00000460408 SPRYD3Q8NCJ5 442 aa8.61□□□□□ -1.03
RFC4-211ENST00000460408 C3orf80F5H4A9 247 aa8.6□□□□□ -1.03
RFC4-211ENST00000460408 SMAPO00193 183 aa8.6□□□□□ -1.03
RFC4-211ENST00000460408 TATDN2Q93075 761 aa8.59□□□□□ -1.03
RFC4-211ENST00000460408 NBPF26B4DH59 902 aa8.58□□□□□ -1.04
RFC4-211ENST00000460408 LAPTM4AQ15012 233 aa8.58□□□□□ -1.04
RFC4-211ENST00000460408 GRXCR2A6NFK2 248 aa8.57□□□□□ -1.04
RFC4-211ENST00000460408 RBM27Q9P2N5 1060 aaKnown RBP8.57□□□□□ -1.04
RFC4-211ENST00000460408 PNMA3Q9UL41 463 aa8.57□□□□□ -1.04
RFC4-211ENST00000460408 OSBPP22059 807 aa8.56□□□□□ -1.04
RFC4-211ENST00000460408 MTRQ99707 1265 aa8.56□□□□□ -1.04
RFC4-211ENST00000460408 IL21Q9HBE4 155 aa8.56□□□□□ -1.04
RFC4-211ENST00000460408 ZBTB4Q9P1Z0 1013 aaPredicted RBP8.56□□□□□ -1.04
RFC4-211ENST00000460408 CDHR5Q9HBB8 845 aa8.55□□□□□ -1.04
RFC4-211ENST00000460408 WDR70Q9NW82 654 aa8.55□□□□□ -1.04
RFC4-211ENST00000460408 NUDT18Q6ZVK8 323 aa8.54□□□□□ -1.04
RFC4-211ENST00000460408 HDGFP51858 240 aaKnown RBP8.52□□□□□ -1.05
RFC4-211ENST00000460408 PPP1R18Q6NYC8 613 aa8.52□□□□□ -1.05
RFC4-211ENST00000460408 TTC13Q8NBP0 860 aa8.52□□□□□ -1.05
RFC4-211ENST00000460408 PRKD2Q9BZL6 878 aa8.52□□□□□ -1.05
RFC4-211ENST00000460408 LCE2BO14633 110 aa8.51□□□□□ -1.05
RFC4-211ENST00000460408 GFRA3O60609 400 aa8.51□□□□□ -1.05
RFC4-211ENST00000460408 APLP1P51693 650 aa8.51□□□□□ -1.05
RFC4-211ENST00000460408 ZNF516Q92618 1163 aa8.5□□□□□ -1.05
RFC4-211ENST00000460408 V9GY48 417 aaPredicted RBP8.5□□□□□ -1.05
RFC4-211ENST00000460408 TRAF7Q6Q0C0 670 aa8.49□□□□□ -1.05
RFC4-211ENST00000460408 NECTIN2Q92692 538 aa8.49□□□□□ -1.05
RFC4-211ENST00000460408 NPDC1Q9NQX5 325 aaPredicted RBP8.49□□□□□ -1.05
RFC4-211ENST00000460408 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.49□□□□□ -1.05
RFC4-211ENST00000460408 NRG2O14511 850 aaPredicted RBP8.48□□□□□ -1.05
RFC4-211ENST00000460408 RNF40O75150 1001 aa8.48□□□□□ -1.05
RFC4-211ENST00000460408 PAXIP1Q6ZW49 1069 aaPredicted RBP8.48□□□□□ -1.05
RFC4-211ENST00000460408 SWT1Q5T5J6 900 aaKnown RBP8.47□□□□□ -1.05
RFC4-211ENST00000460408 PADI6Q6TGC4 694 aa8.47□□□□□ -1.05
RFC4-211ENST00000460408 CFAP44Q96MT7 982 aa8.47□□□□□ -1.05
RFC4-211ENST00000460408 SLF2Q8IX21 1173 aa8.46□□□□□ -1.06
RFC4-211ENST00000460408 HAP1P54257 671 aaPredicted RBP8.45□□□□□ -1.06
RFC4-211ENST00000460408 NKX2-3Q8TAU0 364 aa8.45□□□□□ -1.06
RFC4-211ENST00000460408 EYA1Q99502 592 aa8.44□□□□□ -1.06
RFC4-211ENST00000460408 GGCXP38435 758 aa8.42□□□□□ -1.06
RFC4-211ENST00000460408 TMUB1Q9BVT8 246 aa8.42□□□□□ -1.06
RFC4-211ENST00000460408 COPS2P61201 443 aa8.41□□□□□ -1.06
RFC4-211ENST00000460408 ZPR1O75312 459 aa8.4□□□□□ -1.06
RFC4-211ENST00000460408 SLC4A3P48751 1232 aa8.4□□□□□ -1.06
RFC4-211ENST00000460408 PRR14Q9BWN1 585 aa8.4□□□□□ -1.06
RFC4-211ENST00000460408 PDZRN3Q9UPQ7 1066 aa8.39□□□□□ -1.07
RFC4-211ENST00000460408 ARHGEF1Q92888 912 aaKnown RBP8.38□□□□□ -1.07
RFC4-211ENST00000460408 VSIG10Q8N0Z9 540 aa8.37□□□□□ -1.07
RFC4-211ENST00000460408 PCDHB3Q9Y5E6 796 aa8.37□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 16 ms