RNA–Protein interactions for RNA: ENST00000456975.1

CCDC88A-209, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 2,208 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-209ENST00000456975 AAMPQ13685 434 aa6.95□□□□□ -1.3
CCDC88A-209ENST00000456975 PPP1R15BQ5SWA1 713 aa6.95□□□□□ -1.3
CCDC88A-209ENST00000456975 CFTRP13569 1480 aa6.94□□□□□ -1.3
CCDC88A-209ENST00000456975 IFT140Q96RY7 1462 aa6.94□□□□□ -1.3
CCDC88A-209ENST00000456975 AEBP1Q8IUX7 1158 aa6.94□□□□□ -1.3
CCDC88A-209ENST00000456975 CCDC136Q96JN2 1154 aa6.94□□□□□ -1.3
CCDC88A-209ENST00000456975 TOP2AP11388 1531 aaKnown RBP6.94□□□□□ -1.3
CCDC88A-209ENST00000456975 NUTM2FA1L443 756 aa6.93□□□□□ -1.3
CCDC88A-209ENST00000456975 IRF6O14896 467 aa6.93□□□□□ -1.3
CCDC88A-209ENST00000456975 GRXCR2A6NFK2 248 aa6.92□□□□□ -1.3
CCDC88A-209ENST00000456975 TTLL12Q14166 644 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-209ENST00000456975 POM121Q96HA1 1249 aa6.92□□□□□ -1.3
CCDC88A-209ENST00000456975 BCCIPQ9P287 314 aaKnown RBP eCLIP6.92□□□□□ -1.3
CCDC88A-209ENST00000456975 MINK1Q8N4C8 1332 aaPredicted RBP6.92□□□□□ -1.3
CCDC88A-209ENST00000456975 A6NJR5 290 aa6.92□□□□□ -1.3
CCDC88A-209ENST00000456975 ZEB1P37275 1124 aaPredicted RBP6.91□□□□□ -1.3
CCDC88A-209ENST00000456975 MAP2K5Q13163 448 aa6.91□□□□□ -1.3
CCDC88A-209ENST00000456975 PDIA6Q15084 440 aa6.91□□□□□ -1.3
CCDC88A-209ENST00000456975 AMHR2Q16671 573 aa6.91□□□□□ -1.3
CCDC88A-209ENST00000456975 RBM42Q9BTD8 480 aaKnown RBP6.91□□□□□ -1.3
CCDC88A-209ENST00000456975 MS4A1P11836 297 aa6.91□□□□□ -1.3
CCDC88A-209ENST00000456975 MCM6Q14566 821 aa6.91□□□□□ -1.3
CCDC88A-209ENST00000456975 RAD21O60216 631 aa6.9□□□□□ -1.3
CCDC88A-209ENST00000456975 ZNF326Q5BKZ1 582 aaKnown RBP6.9□□□□□ -1.3
CCDC88A-209ENST00000456975 KIF12Q96FN5 646 aa6.9□□□□□ -1.3
CCDC88A-209ENST00000456975 SALL2Q9Y467 1007 aaPredicted RBP6.9□□□□□ -1.3
CCDC88A-209ENST00000456975 REPIN1Q9BWE0 567 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-209ENST00000456975 HMGB1P09429 215 aaKnown RBP6.89□□□□□ -1.31
CCDC88A-209ENST00000456975 DSG2Q14126 1118 aa6.89□□□□□ -1.31
CCDC88A-209ENST00000456975 A0A0U1RQG5 324 aaPredicted RBP6.88□□□□□ -1.31
CCDC88A-209ENST00000456975 ZNF428Q96B54 188 aa6.88□□□□□ -1.31
CCDC88A-209ENST00000456975 GPHNQ9NQX3 736 aaPredicted RBP6.88□□□□□ -1.31
CCDC88A-209ENST00000456975 TOPBP1Q92547 1522 aa6.88□□□□□ -1.31
CCDC88A-209ENST00000456975 ERICH6BQ5W0A0 696 aa6.87□□□□□ -1.31
CCDC88A-209ENST00000456975 GIGYF2Q6Y7W6 1299 aaKnown RBP6.87□□□□□ -1.31
CCDC88A-209ENST00000456975 TARBP1Q13395 1621 aaKnown RBP6.87□□□□□ -1.31
CCDC88A-209ENST00000456975 PROSER2Q86WR7 435 aaPredicted RBP6.86□□□□□ -1.31
CCDC88A-209ENST00000456975 DNMBPQ6XZF7 1577 aa6.86□□□□□ -1.31
CCDC88A-209ENST00000456975 CLASP1Q7Z460 1538 aa6.86□□□□□ -1.31
CCDC88A-209ENST00000456975 CCDC88BA6NC98 1476 aa6.86□□□□□ -1.31
CCDC88A-209ENST00000456975 GNPATO15228 680 aa6.86□□□□□ -1.31
CCDC88A-209ENST00000456975 PCMTD1Q96MG8 357 aaPredicted RBP6.86□□□□□ -1.31
CCDC88A-209ENST00000456975 GOPCQ9HD26 462 aa6.86□□□□□ -1.31
CCDC88A-209ENST00000456975 MTMR7Q9Y216 660 aa6.86□□□□□ -1.31
CCDC88A-209ENST00000456975 SYNJ1O43426 1573 aa6.85□□□□□ -1.31
CCDC88A-209ENST00000456975 SPDYE16A6NNV3 312 aaPredicted RBP6.85□□□□□ -1.31
CCDC88A-209ENST00000456975 NAP1L5Q96NT1 182 aaPredicted RBP6.85□□□□□ -1.31
CCDC88A-209ENST00000456975 IRX6P78412 446 aaPredicted RBP6.84□□□□□ -1.31
CCDC88A-209ENST00000456975 RBM10P98175 930 aaKnown RBP6.84□□□□□ -1.31
CCDC88A-209ENST00000456975 GOLGA2Q08379 1002 aa6.84□□□□□ -1.31
CCDC88A-209ENST00000456975 FOXD4L5Q5VV16 416 aaPredicted RBP6.84□□□□□ -1.31
CCDC88A-209ENST00000456975 FNBP4Q8N3X1 1017 aaPredicted RBP6.84□□□□□ -1.31
CCDC88A-209ENST00000456975 RETREG2Q8NC44 543 aa6.84□□□□□ -1.31
CCDC88A-209ENST00000456975 FOXD4L4Q8WXT5 416 aaPredicted RBP6.84□□□□□ -1.31
CCDC88A-209ENST00000456975 POLR3GLQ9BT43 218 aa6.84□□□□□ -1.31
CCDC88A-209ENST00000456975 TRAIPQ9BWF2 469 aa6.84□□□□□ -1.31
CCDC88A-209ENST00000456975 AQRO60306 1485 aaKnown RBP eCLIP6.84□□□□□ -1.31
CCDC88A-209ENST00000456975 OSBPP22059 807 aa6.83□□□□□ -1.32
CCDC88A-209ENST00000456975 RGS22Q8NE09 1264 aa6.83□□□□□ -1.32
CCDC88A-209ENST00000456975 CCDC97Q96F63 343 aaPredicted RBP6.83□□□□□ -1.32
CCDC88A-209ENST00000456975 ATP1B4Q9UN42 357 aaPredicted RBP6.83□□□□□ -1.32
CCDC88A-209ENST00000456975 TRPC6Q9Y210 931 aa6.83□□□□□ -1.32
CCDC88A-209ENST00000456975 IRF5Q13568 498 aa6.82□□□□□ -1.32
CCDC88A-209ENST00000456975 PUS7Q96PZ0 661 aaKnown RBP6.82□□□□□ -1.32
CCDC88A-209ENST00000456975 ABCC8Q09428 1581 aa6.82□□□□□ -1.32
CCDC88A-209ENST00000456975 KIF13AQ9H1H9 1805 aa6.82□□□□□ -1.32
CCDC88A-209ENST00000456975 PRIM1P49642 420 aaKnown RBP6.82□□□□□ -1.32
CCDC88A-209ENST00000456975 PROCA1Q8NCQ7 364 aaPredicted RBP6.82□□□□□ -1.32
CCDC88A-209ENST00000456975 DDX12PQ92771 950 aa6.82□□□□□ -1.32
CCDC88A-209ENST00000456975 TMEM106CQ9BVX2 250 aa6.82□□□□□ -1.32
CCDC88A-209ENST00000456975 GZF1Q9H116 711 aaPredicted RBP6.82□□□□□ -1.32
CCDC88A-209ENST00000456975 CLSPNQ9HAW4 1339 aa6.82□□□□□ -1.32
CCDC88A-209ENST00000456975 PRKAR2AP13861 404 aaKnown RBP6.81□□□□□ -1.32
CCDC88A-209ENST00000456975 SNAPC4Q5SXM2 1469 aa6.81□□□□□ -1.32
CCDC88A-209ENST00000456975 ACIN1Q9UKV3 1341 aaKnown RBP6.8□□□□□ -1.32
CCDC88A-209ENST00000456975 HIC1Q14526 733 aa6.8□□□□□ -1.32
CCDC88A-209ENST00000456975 OXER1Q8TDS5 423 aa6.8□□□□□ -1.32
CCDC88A-209ENST00000456975 POLR3EQ9NVU0 708 aa6.8□□□□□ -1.32
CCDC88A-209ENST00000456975 SERPINA10Q9UK55 444 aa6.8□□□□□ -1.32
CCDC88A-209ENST00000456975 PBRM1Q86U86 1689 aa6.8□□□□□ -1.32
CCDC88A-209ENST00000456975 DPY19L2Q6NUT2 758 aa6.8□□□□□ -1.32
CCDC88A-209ENST00000456975 PAK3O75914 559 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-209ENST00000456975 RBM25P49756 843 aaKnown RBP6.79□□□□□ -1.32
CCDC88A-209ENST00000456975 TMCO4Q5TGY1 634 aa6.79□□□□□ -1.32
CCDC88A-209ENST00000456975 ILDR1Q86SU0 546 aaPredicted RBP6.79□□□□□ -1.32
CCDC88A-209ENST00000456975 PHF12Q96QT6 1004 aa6.79□□□□□ -1.32
CCDC88A-209ENST00000456975 GAPVD1Q14C86 1478 aa6.79□□□□□ -1.32
CCDC88A-209ENST00000456975 FCHSD2O94868 740 aa6.78□□□□□ -1.32
CCDC88A-209ENST00000456975 UPF1Q92900 1129 aaKnown RBP eCLIP6.78□□□□□ -1.32
CCDC88A-209ENST00000456975 WDR97A6NE52 1622 aa6.78□□□□□ -1.32
CCDC88A-209ENST00000456975 POLA1P09884 1462 aaPredicted RBP6.78□□□□□ -1.32
CCDC88A-209ENST00000456975 MFAP1P55081 439 aaKnown RBP6.78□□□□□ -1.32
CCDC88A-209ENST00000456975 SH3D19Q5HYK7 790 aa6.78□□□□□ -1.32
CCDC88A-209ENST00000456975 PHOX2BQ99453 314 aa6.78□□□□□ -1.32
CCDC88A-209ENST00000456975 PLSCR2Q9NRY7 297 aa6.78□□□□□ -1.32
CCDC88A-209ENST00000456975 MAP3K9P80192 1104 aa6.77□□□□□ -1.33
CCDC88A-209ENST00000456975 PLPP6Q8IY26 295 aa6.77□□□□□ -1.33
CCDC88A-209ENST00000456975 COG6Q9Y2V7 657 aa6.77□□□□□ -1.33
CCDC88A-209ENST00000456975 FOXK1P85037 733 aa6.77□□□□□ -1.33
CCDC88A-209ENST00000456975 NLRP7Q8WX94 980 aa6.77□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms