RNA–Protein interactions for RNA: ENST00000454569.5

SCN9A-205, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

TSL 1 (best)

Gene SCN9A, Length 1,585 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-205ENST00000454569 SLC4A2P04920 1241 aa16.43■□□□□ 0.22
SCN9A-205ENST00000454569 MLH3Q9UHC1 1453 aa16.43■□□□□ 0.22
SCN9A-205ENST00000454569 YEATS2Q9ULM3 1422 aa16.42■□□□□ 0.22
SCN9A-205ENST00000454569 MYT1LQ9UL68 1186 aa16.42■□□□□ 0.22
SCN9A-205ENST00000454569 ZMYM4Q5VZL5 1548 aa16.41■□□□□ 0.22
SCN9A-205ENST00000454569 DIP2CQ9Y2E4 1556 aa16.4■□□□□ 0.22
SCN9A-205ENST00000454569 ANKRD50Q9ULJ7 1429 aa16.39■□□□□ 0.21
SCN9A-205ENST00000454569 SIGLEC1Q9BZZ2 1709 aa16.39■□□□□ 0.21
SCN9A-205ENST00000454569 DUOX2Q9NRD8 1548 aa16.38■□□□□ 0.21
SCN9A-205ENST00000454569 HRCP23327 699 aa16.34■□□□□ 0.21
SCN9A-205ENST00000454569 DHX57Q6P158 1386 aaKnown RBP16.33■□□□□ 0.21
SCN9A-205ENST00000454569 DHX29Q7Z478 1369 aaKnown RBP16.33■□□□□ 0.21
SCN9A-205ENST00000454569 A2MP01023 1474 aa16.33■□□□□ 0.21
SCN9A-205ENST00000454569 TRIM52Q96A61 297 aa16.31■□□□□ 0.2
SCN9A-205ENST00000454569 ERBINQ96RT1 1412 aa16.31■□□□□ 0.2
SCN9A-205ENST00000454569 MAGI2Q86UL8 1455 aa16.31■□□□□ 0.2
SCN9A-205ENST00000454569 UNC13BO14795 1591 aa16.3■□□□□ 0.2
SCN9A-205ENST00000454569 MROH1Q8NDA8 1641 aa16.3■□□□□ 0.2
SCN9A-205ENST00000454569 ARHGEF40Q8TER5 1519 aa16.3■□□□□ 0.2
SCN9A-205ENST00000454569 DEPDC5O75140 1603 aa16.29■□□□□ 0.2
SCN9A-205ENST00000454569 EIF2AK4Q9P2K8 1649 aaKnown RBP16.29■□□□□ 0.2
SCN9A-205ENST00000454569 ATP10AO60312 1499 aa16.29■□□□□ 0.2
SCN9A-205ENST00000454569 PZPP20742 1482 aa16.29■□□□□ 0.2
SCN9A-205ENST00000454569 KIF3BO15066 747 aa16.28■□□□□ 0.2
SCN9A-205ENST00000454569 BCORL1Q5H9F3 1711 aa16.27■□□□□ 0.2
SCN9A-205ENST00000454569 GRWD1Q9BQ67 446 aaKnown RBP eCLIP16.27■□□□□ 0.25e-7■■□□□ 12.4
SCN9A-205ENST00000454569 CCER1Q8TC90 406 aaPredicted RBP16.26■□□□□ 0.19
SCN9A-205ENST00000454569 NUP155O75694 1391 aa16.25■□□□□ 0.19
SCN9A-205ENST00000454569 RNF17Q9BXT8 1623 aaKnown RBP16.25■□□□□ 0.19
SCN9A-205ENST00000454569 MPHOSPH9Q99550 1183 aa16.25■□□□□ 0.19
SCN9A-205ENST00000454569 REREQ9P2R6 1566 aa16.25■□□□□ 0.19
SCN9A-205ENST00000454569 CEP152O94986 1710 aa16.25■□□□□ 0.19
SCN9A-205ENST00000454569 KDM5DQ9BY66 1539 aa16.24■□□□□ 0.19
SCN9A-205ENST00000454569 IQGAP3Q86VI3 1631 aa16.23■□□□□ 0.19
SCN9A-205ENST00000454569 CFAP65Q6ZU64 1925 aaKnown RBP16.23■□□□□ 0.19
SCN9A-205ENST00000454569 FAM135AQ9P2D6 1515 aa16.22■□□□□ 0.19
SCN9A-205ENST00000454569 VWDEQ8N2E2 1590 aa16.22■□□□□ 0.19
SCN9A-205ENST00000454569 GGT6Q6P531 493 aa16.21■□□□□ 0.19
SCN9A-205ENST00000454569 PRDM15P57071 1507 aaPredicted RBP16.21■□□□□ 0.19
SCN9A-205ENST00000454569 AGLP35573 1532 aa16.2■□□□□ 0.18
SCN9A-205ENST00000454569 E9PCH4 1651 aa16.18■□□□□ 0.18
SCN9A-205ENST00000454569 PKD2Q13563 968 aa16.17■□□□□ 0.18
SCN9A-205ENST00000454569 MLECQ14165 292 aa16.17■□□□□ 0.18
SCN9A-205ENST00000454569 SIN3AQ96ST3 1273 aa16.16■□□□□ 0.18
SCN9A-205ENST00000454569 TET3O43151 1660 aa16.15■□□□□ 0.18
SCN9A-205ENST00000454569 ABCC3O15438 1527 aa16.14■□□□□ 0.17
SCN9A-205ENST00000454569 MYCNP04198 464 aaPredicted RBP16.13■□□□□ 0.17
SCN9A-205ENST00000454569 CLTCQ00610 1675 aaKnown RBP16.13■□□□□ 0.17
SCN9A-205ENST00000454569 ARID4BQ4LE39 1312 aaPredicted RBP16.12■□□□□ 0.17
SCN9A-205ENST00000454569 CAMSAP1Q5T5Y3 1602 aa16.12■□□□□ 0.17
SCN9A-205ENST00000454569 ACIN1Q9UKV3 1341 aaKnown RBP16.12■□□□□ 0.17
SCN9A-205ENST00000454569 ANKRD30BQ9BXX2 1392 aa16.12■□□□□ 0.17
SCN9A-205ENST00000454569 LMTK2Q8IWU2 1503 aa16.12■□□□□ 0.17
SCN9A-205ENST00000454569 KANK1Q14678 1352 aa16.11■□□□□ 0.17
SCN9A-205ENST00000454569 PLA2R1Q13018 1463 aa16.11■□□□□ 0.17
SCN9A-205ENST00000454569 WASHC2CQ9Y4E1 1318 aa16.1■□□□□ 0.17
SCN9A-205ENST00000454569 ZC3H13Q5T200 1668 aaKnown RBP16.1■□□□□ 0.17
SCN9A-205ENST00000454569 EFCAB6Q5THR3 1501 aa16.09■□□□□ 0.17
SCN9A-205ENST00000454569 SPHKAPQ2M3C7 1700 aa16.08■□□□□ 0.17
SCN9A-205ENST00000454569 NEUROD1Q13562 356 aa16.08■□□□□ 0.16
SCN9A-205ENST00000454569 NPATQ14207 1427 aa16.07■□□□□ 0.16
SCN9A-205ENST00000454569 CLSPNQ9HAW4 1339 aa16.06■□□□□ 0.16
SCN9A-205ENST00000454569 FER1L4A9Z1Z3 1794 aa16.05■□□□□ 0.16
SCN9A-205ENST00000454569 ATXN8OSP0DMR3 200 aa16.05■□□□□ 0.16
SCN9A-205ENST00000454569 UGGT1Q9NYU2 1555 aa16.03■□□□□ 0.16
SCN9A-205ENST00000454569 FBXO31Q5XUX0 539 aaPredicted RBP16.03■□□□□ 0.16
SCN9A-205ENST00000454569 PREX1Q8TCU6 1659 aa16.03■□□□□ 0.16
SCN9A-205ENST00000454569 PTPRTO14522 1441 aa16.02■□□□□ 0.16
SCN9A-205ENST00000454569 CLTCL1P53675 1640 aa16.02■□□□□ 0.15
SCN9A-205ENST00000454569 ADAMTSL3P82987 1691 aa16.02■□□□□ 0.15
SCN9A-205ENST00000454569 MADDQ8WXG6 1647 aa16.01■□□□□ 0.15
SCN9A-205ENST00000454569 SYNMO15061 1565 aa16.01■□□□□ 0.15
SCN9A-205ENST00000454569 ARHGAP31Q2M1Z3 1444 aa16.01■□□□□ 0.15
SCN9A-205ENST00000454569 C3P01024 1663 aa16■□□□□ 0.15
SCN9A-205ENST00000454569 RIMS1Q86UR5 1692 aaKnown RBP16■□□□□ 0.15
SCN9A-205ENST00000454569 RPRD2Q5VT52 1461 aaKnown RBP16■□□□□ 0.15
SCN9A-205ENST00000454569 TRPM2O94759 1503 aa15.99■□□□□ 0.15
SCN9A-205ENST00000454569 MROH2AA6NES4 1674 aa15.99■□□□□ 0.15
SCN9A-205ENST00000454569 ZMYM3Q14202 1370 aa15.99■□□□□ 0.15
SCN9A-205ENST00000454569 CEBPAP49715 358 aaPredicted RBP15.99■□□□□ 0.15
SCN9A-205ENST00000454569 NOS1P29475 1434 aa15.98■□□□□ 0.15
SCN9A-205ENST00000454569 MYO5BQ9ULV0 1848 aa15.97■□□□□ 0.15
SCN9A-205ENST00000454569 KIF1BO60333 1816 aa15.95■□□□□ 0.14
SCN9A-205ENST00000454569 CCDC144AA2RUR9 1427 aa15.95■□□□□ 0.14
SCN9A-205ENST00000454569 PIK3C2BO00750 1634 aa15.95■□□□□ 0.14
SCN9A-205ENST00000454569 ESF1Q9H501 851 aaKnown RBP15.95■□□□□ 0.14
SCN9A-205ENST00000454569 ERVK-7P63135 1459 aa15.95■□□□□ 0.14
SCN9A-205ENST00000454569 SPATA31D1Q6ZQQ2 1576 aa15.94■□□□□ 0.14
SCN9A-205ENST00000454569 L3MBTL2Q969R5 705 aa15.92■□□□□ 0.14
SCN9A-205ENST00000454569 CNTLNQ9NXG0 1405 aa15.92■□□□□ 0.14
SCN9A-205ENST00000454569 ZEB1P37275 1124 aaPredicted RBP15.92■□□□□ 0.14
SCN9A-205ENST00000454569 DCAF8L1A6NGE4 600 aa15.91■□□□□ 0.14
SCN9A-205ENST00000454569 IDI1Q13907 227 aa15.91■□□□□ 0.14
SCN9A-205ENST00000454569 SPATA31E1Q6ZUB1 1445 aa15.91■□□□□ 0.14
SCN9A-205ENST00000454569 RGL3Q3MIN7 710 aa15.9■□□□□ 0.14
SCN9A-205ENST00000454569 TONSLQ96HA7 1378 aa15.9■□□□□ 0.14
SCN9A-205ENST00000454569 PPP1R15AO75807 674 aaPredicted RBP15.87■□□□□ 0.13
SCN9A-205ENST00000454569 TMEM131LA2VDJ0 1609 aa15.87■□□□□ 0.13
SCN9A-205ENST00000454569 IFT172Q9UG01 1749 aa15.86■□□□□ 0.13
SCN9A-205ENST00000454569 KDM4FA0A1W2PPD8 638 aa15.86■□□□□ 0.13
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms