RNA–Protein interactions for RNA: ENST00000447578.6

VPS29-202, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 996 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-202ENST00000447578 PCDHGA10Q9Y5H3 936 aa10.98□□□□□ -0.65
VPS29-202ENST00000447578 DPYSL4O14531 572 aa10.96□□□□□ -0.65
VPS29-202ENST00000447578 CAMK2BQ13554 666 aa10.96□□□□□ -0.65
VPS29-202ENST00000447578 SPRYD3Q8NCJ5 442 aa10.96□□□□□ -0.65
VPS29-202ENST00000447578 ZBED2Q9BTP6 218 aa10.96□□□□□ -0.65
VPS29-202ENST00000447578 MRPL50Q8N5N7 158 aaKnown RBP10.95□□□□□ -0.66
VPS29-202ENST00000447578 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.93□□□□□ -0.66
VPS29-202ENST00000447578 GFRA3O60609 400 aa10.91□□□□□ -0.66
VPS29-202ENST00000447578 PAXIP1Q6ZW49 1069 aaPredicted RBP10.91□□□□□ -0.66
VPS29-202ENST00000447578 CFAP44Q96MT7 982 aa10.91□□□□□ -0.66
VPS29-202ENST00000447578 PHF14O94880 888 aa10.9□□□□□ -0.66
VPS29-202ENST00000447578 COL9A1P20849 921 aa10.9□□□□□ -0.66
VPS29-202ENST00000447578 TYW1BQ6NUM6 668 aa10.89□□□□□ -0.67
VPS29-202ENST00000447578 PROX2Q3B8N5 592 aa10.88□□□□□ -0.67
VPS29-202ENST00000447578 PPP1R3GB7ZBB8 358 aa10.87□□□□□ -0.67
VPS29-202ENST00000447578 DDX12PQ92771 950 aa10.87□□□□□ -0.67
VPS29-202ENST00000447578 FBXW7Q969H0 707 aa10.87□□□□□ -0.67
VPS29-202ENST00000447578 NBPF3Q9H094 633 aa10.86□□□□□ -0.67
VPS29-202ENST00000447578 ZNF787Q6DD87 383 aa10.85□□□□□ -0.67
VPS29-202ENST00000447578 RBM33Q96EV2 1170 aaKnown RBP10.84□□□□□ -0.67
VPS29-202ENST00000447578 C6orf132Q5T0Z8 1188 aa10.83□□□□□ -0.68
VPS29-202ENST00000447578 EPAS1Q99814 870 aa10.82□□□□□ -0.68
VPS29-202ENST00000447578 KCNC4Q03721 635 aa10.81□□□□□ -0.68
VPS29-202ENST00000447578 RABGEF1Q9UJ41 708 aa10.81□□□□□ -0.68
VPS29-202ENST00000447578 NRG2O14511 850 aaPredicted RBP10.8□□□□□ -0.68
VPS29-202ENST00000447578 ZNF775Q96BV0 537 aaPredicted RBP10.8□□□□□ -0.68
VPS29-202ENST00000447578 PDIA6Q15084 440 aa10.79□□□□□ -0.68
VPS29-202ENST00000447578 E2F4Q16254 413 aa10.79□□□□□ -0.68
VPS29-202ENST00000447578 NYAP1Q6ZVC0 841 aa10.79□□□□□ -0.68
VPS29-202ENST00000447578 KIAA1468Q9P260 1216 aa10.79□□□□□ -0.68
VPS29-202ENST00000447578 ANKK1Q8NFD2 765 aa10.78□□□□□ -0.68
VPS29-202ENST00000447578 NBR1Q14596 966 aa10.77□□□□□ -0.69
VPS29-202ENST00000447578 WDR70Q9NW82 654 aa10.77□□□□□ -0.69
VPS29-202ENST00000447578 TSR1Q2NL82 804 aaKnown RBP10.76□□□□□ -0.69
VPS29-202ENST00000447578 SEPT9Q9UHD8 586 aaPredicted RBP10.74□□□□□ -0.69
VPS29-202ENST00000447578 SPDYE16A6NNV3 312 aaPredicted RBP10.73□□□□□ -0.69
VPS29-202ENST00000447578 MAP3K7O43318 606 aa10.73□□□□□ -0.69
VPS29-202ENST00000447578 PRIM1P49642 420 aaKnown RBP10.73□□□□□ -0.69
VPS29-202ENST00000447578 EN1Q05925 392 aaPredicted RBP10.73□□□□□ -0.69
VPS29-202ENST00000447578 GRXCR2A6NFK2 248 aa10.72□□□□□ -0.69
VPS29-202ENST00000447578 TRIM6-TRIM34B2RNG4 842 aa10.72□□□□□ -0.69
VPS29-202ENST00000447578 BCAMP50895 628 aa10.72□□□□□ -0.69
VPS29-202ENST00000447578 ZFRQ96KR1 1074 aaKnown RBP10.71□□□□□ -0.69
VPS29-202ENST00000447578 ONECUT3O60422 494 aaPredicted RBP10.7□□□□□ -0.7
VPS29-202ENST00000447578 LAPTM4BQ86VI4 370 aa10.7□□□□□ -0.7
VPS29-202ENST00000447578 ARIH1Q9Y4X5 557 aaPredicted RBP10.69□□□□□ -0.7
VPS29-202ENST00000447578 SOWAHBA6NEL2 793 aa10.68□□□□□ -0.7
VPS29-202ENST00000447578 TSKSQ9UJT2 592 aa10.68□□□□□ -0.7
VPS29-202ENST00000447578 TSHZ2Q9NRE2 1034 aa10.67□□□□□ -0.7
VPS29-202ENST00000447578 PRKD2Q9BZL6 878 aa10.65□□□□□ -0.7
VPS29-202ENST00000447578 FAM98CQ17RN3 349 aaKnown RBP10.64□□□□□ -0.71
VPS29-202ENST00000447578 WBP1LQ9NX94 342 aa10.64□□□□□ -0.71
VPS29-202ENST00000447578 FAM198AQ9UFP1 575 aa10.64□□□□□ -0.71
VPS29-202ENST00000447578 SMAPO00193 183 aa10.63□□□□□ -0.71
VPS29-202ENST00000447578 OSBPP22059 807 aa10.63□□□□□ -0.71
VPS29-202ENST00000447578 PACS2Q86VP3 889 aa10.63□□□□□ -0.71
VPS29-202ENST00000447578 CDCA7LQ96GN5 454 aa10.63□□□□□ -0.71
VPS29-202ENST00000447578 CDHR5Q9HBB8 845 aa10.63□□□□□ -0.71
VPS29-202ENST00000447578 C3orf80F5H4A9 247 aa10.62□□□□□ -0.71
VPS29-202ENST00000447578 PRSS12P56730 875 aa10.61□□□□□ -0.71
VPS29-202ENST00000447578 CDKN2AIPQ9NXV6 580 aaPredicted RBP10.6□□□□□ -0.71
VPS29-202ENST00000447578 V9GY48 417 aaPredicted RBP10.6□□□□□ -0.71
VPS29-202ENST00000447578 LRCH3Q96II8 777 aa10.58□□□□□ -0.72
VPS29-202ENST00000447578 HPS5Q9UPZ3 1129 aa10.58□□□□□ -0.72
VPS29-202ENST00000447578 CERKQ8TCT0 537 aa10.56□□□□□ -0.72
VPS29-202ENST00000447578 TSR3Q9UJK0 312 aaKnown RBP10.56□□□□□ -0.72
VPS29-202ENST00000447578 PDZRN3Q9UPQ7 1066 aa10.56□□□□□ -0.72
VPS29-202ENST00000447578 TATDN2Q93075 761 aa10.55□□□□□ -0.72
VPS29-202ENST00000447578 PNMA3Q9UL41 463 aa10.55□□□□□ -0.72
VPS29-202ENST00000447578 SAMD7Q7Z3H4 446 aa10.54□□□□□ -0.72
VPS29-202ENST00000447578 KCNV2Q8TDN2 545 aa10.54□□□□□ -0.72
VPS29-202ENST00000447578 MLLT3P42568 568 aaPredicted RBP10.53□□□□□ -0.72
VPS29-202ENST00000447578 NUDT18Q6ZVK8 323 aa10.52□□□□□ -0.73
VPS29-202ENST00000447578 NPDC1Q9NQX5 325 aaPredicted RBP10.52□□□□□ -0.73
VPS29-202ENST00000447578 PPP4CP60510 307 aa10.51□□□□□ -0.73
VPS29-202ENST00000447578 ARHGEF1Q92888 912 aaKnown RBP10.51□□□□□ -0.73
VPS29-202ENST00000447578 NBPF26B4DH59 902 aa10.5□□□□□ -0.73
VPS29-202ENST00000447578 PADI6Q6TGC4 694 aa10.49□□□□□ -0.73
VPS29-202ENST00000447578 TTC13Q8NBP0 860 aa10.47□□□□□ -0.73
VPS29-202ENST00000447578 PPP1R18Q6NYC8 613 aa10.46□□□□□ -0.73
VPS29-202ENST00000447578 RBM27Q9P2N5 1060 aaKnown RBP10.46□□□□□ -0.73
VPS29-202ENST00000447578 TREML4Q6UXN2 200 aa10.45□□□□□ -0.74
VPS29-202ENST00000447578 RNF40O75150 1001 aa10.44□□□□□ -0.74
VPS29-202ENST00000447578 TJAP1Q5JTD0 557 aa10.42□□□□□ -0.74
VPS29-202ENST00000447578 HDGFP51858 240 aaKnown RBP10.41□□□□□ -0.74
VPS29-202ENST00000447578 SWT1Q5T5J6 900 aaKnown RBP10.41□□□□□ -0.74
VPS29-202ENST00000447578 EIF4ENIF1Q9NRA8 985 aaKnown RBP10.41□□□□□ -0.74
VPS29-202ENST00000447578 LCE2AQ5TA79 106 aaPredicted RBP10.4□□□□□ -0.74
VPS29-202ENST00000447578 LOC100996750A0A140TA64 210 aa10.39□□□□□ -0.75
VPS29-202ENST00000447578 SEMA3EO15041 775 aa10.39□□□□□ -0.75
VPS29-202ENST00000447578 APLP1P51693 650 aa10.39□□□□□ -0.75
VPS29-202ENST00000447578 PTGDRQ13258 359 aa10.39□□□□□ -0.75
VPS29-202ENST00000447578 EYA1Q99502 592 aa10.39□□□□□ -0.75
VPS29-202ENST00000447578 MTRQ99707 1265 aa10.39□□□□□ -0.75
VPS29-202ENST00000447578 KRTAP4-6Q9BYQ5 205 aa10.39□□□□□ -0.75
VPS29-202ENST00000447578 STK17AQ9UEE5 414 aa10.38□□□□□ -0.75
VPS29-202ENST00000447578 NUTM2FA1L443 756 aa10.37□□□□□ -0.75
VPS29-202ENST00000447578 ZNF516Q92618 1163 aa10.37□□□□□ -0.75
VPS29-202ENST00000447578 IL21Q9HBE4 155 aa10.37□□□□□ -0.75
VPS29-202ENST00000447578 POTECB2RU33 542 aa10.36□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 8.3 ms