RNA–Protein interactions for RNA: ENST00000441587.2

ALMS1-IT1-201, ALMS1 intronic transcript 1, humanhuman

TSL 1 (best) BASIC

Gene ALMS1-IT1, Length 2,107 nt, Biotype sense intronic.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ALMS1-IT1-201ENST00000441587 SKIV2LQ15477 1246 aaKnown RBP8.6□□□□□ -1.03
ALMS1-IT1-201ENST00000441587 CHADLQ6NUI6 762 aa8.6□□□□□ -1.03
ALMS1-IT1-201ENST00000441587 PATL2C9JE40 543 aaKnown RBP8.59□□□□□ -1.03
ALMS1-IT1-201ENST00000441587 SPDYE5A6NIY4 337 aa8.58□□□□□ -1.04
ALMS1-IT1-201ENST00000441587 COG6Q9Y2V7 657 aa8.58□□□□□ -1.04
ALMS1-IT1-201ENST00000441587 DSG2Q14126 1118 aa8.57□□□□□ -1.04
ALMS1-IT1-201ENST00000441587 PITPNM1O00562 1244 aa8.57□□□□□ -1.04
ALMS1-IT1-201ENST00000441587 OXER1Q8TDS5 423 aa8.57□□□□□ -1.04
ALMS1-IT1-201ENST00000441587 REPIN1Q9BWE0 567 aaKnown RBP8.57□□□□□ -1.04
ALMS1-IT1-201ENST00000441587 PAK3O75914 559 aaPredicted RBP8.56□□□□□ -1.04
ALMS1-IT1-201ENST00000441587 OSBPP22059 807 aa8.56□□□□□ -1.04
ALMS1-IT1-201ENST00000441587 KIF12Q96FN5 646 aa8.56□□□□□ -1.04
ALMS1-IT1-201ENST00000441587 PROCA1Q8NCQ7 364 aaPredicted RBP8.54□□□□□ -1.04
ALMS1-IT1-201ENST00000441587 CLCN1P35523 988 aa8.53□□□□□ -1.04
ALMS1-IT1-201ENST00000441587 MAP3K9P80192 1104 aa8.53□□□□□ -1.04
ALMS1-IT1-201ENST00000441587 POLR3EQ9NVU0 708 aa8.52□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 FOXK1P85037 733 aa8.51□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 CALR3Q96L12 384 aaKnown RBP8.51□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 PPARGC1BQ86YN6 1023 aaKnown RBP8.51□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 WWC1Q8IX03 1113 aa8.51□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 GPCPD1Q9NPB8 672 aa8.51□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 KCNA1Q09470 495 aa8.5□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 TMC2Q8TDI7 906 aa8.5□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 DCAF1Q9Y4B6 1507 aa8.5□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 SSTR3P32745 418 aaPredicted RBP8.5□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 PTGDRQ13258 359 aa8.5□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 BANK1Q8NDB2 785 aa8.5□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 BEGAINQ9BUH8 593 aa8.5□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 BRD1O95696 1058 aa8.49□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 SNRKQ9NRH2 765 aa8.49□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.48□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 TMUB1Q9BVT8 246 aa8.48□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 MDM2Q00987 491 aaPredicted RBP8.48□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 AMOTL2Q9Y2J4 779 aa8.48□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 DDX12PQ92771 950 aa8.47□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 PKNOX2Q96KN3 472 aa8.47□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 BCCIPQ9P287 314 aaKnown RBP eCLIP8.47□□□□□ -1.05
ALMS1-IT1-201ENST00000441587 CENPBP07199 599 aaPredicted RBP8.46□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 PLPP6Q8IY26 295 aa8.46□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 TMEM106CQ9BVX2 250 aa8.46□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 MYT1LQ9UL68 1186 aa8.46□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 PTGER2P43116 358 aa8.45□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 CCDC27Q2M243 656 aa8.45□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 TBC1D12O60347 775 aa8.45□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 RFC5P40937 340 aa8.45□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 GDPD2Q9HCC8 539 aa8.45□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 GLMNQ92990 594 aa8.44□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 USP35Q9P2H5 1018 aa8.44□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 USTQ9Y2C2 406 aa8.44□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 CLK2P49760 499 aaKnown RBP8.43□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 TMEM259Q4ZIN3 620 aa8.43□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 MYSM1Q5VVJ2 828 aa8.43□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 PBXIP1Q96AQ6 731 aa8.43□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 CSB-PGBD3P0DP91 1061 aa8.42□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 PRM3Q9NNZ6 103 aa8.42□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.42□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 ABL2P42684 1182 aa8.41□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 UPF1Q92900 1129 aaKnown RBP eCLIP8.4□□□□□ -1.068e-7■■■□□ 14.9
ALMS1-IT1-201ENST00000441587 FAM217BQ9NTX9 383 aaPredicted RBP8.4□□□□□ -1.06
ALMS1-IT1-201ENST00000441587 ZNF326Q5BKZ1 582 aaKnown RBP8.39□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 PHOX2BQ99453 314 aa8.39□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 POM121CA8CG34 1229 aa8.39□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 PRKAR2AP13861 404 aaKnown RBP8.39□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 PRIM1P49642 420 aaKnown RBP8.39□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 MTMR14Q8NCE2 650 aa8.39□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 ILDR1Q86SU0 546 aaPredicted RBP8.38□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 RFX1P22670 979 aa8.38□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 IVNS1ABPQ9Y6Y0 642 aa8.38□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP8.37□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 DIXDC1Q155Q3 683 aa8.37□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 SND1Q7KZF4 910 aaKnown RBP eCLIP8.37□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 MICALL2Q8IY33 904 aa8.37□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 FGD1P98174 961 aa8.36□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 C2orf72A6NCS6 295 aa8.35□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 RSPH4AQ5TD94 716 aa8.35□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 PPP2R2DQ66LE6 453 aa8.35□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 TBC1D2Q9BYX2 928 aa8.35□□□□□ -1.07
ALMS1-IT1-201ENST00000441587 FBXO31Q5XUX0 539 aaPredicted RBP8.33□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 NPDC1Q9NQX5 325 aaPredicted RBP8.33□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 TBC1D2BQ9UPU7 963 aa8.33□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 HDGFL1Q5TGJ6 251 aa8.33□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 CARNS1A5YM72 827 aa8.32□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 DPY19L2Q6NUT2 758 aa8.32□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 SOCS7O14512 581 aa8.32□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 EVI5O60447 810 aa8.32□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 CDHR5Q9HBB8 845 aa8.32□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 KIF3CO14782 793 aa8.31□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 ZRANB1Q9UGI0 708 aa8.31□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 LIMD1Q9UGP4 676 aa8.31□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 OATP04181 439 aa8.3□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 METTL3Q86U44 580 aaKnown RBP8.3□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 GTF3C5Q9Y5Q8 519 aaPredicted RBP8.3□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 MYO15BQ96JP2 1530 aa8.3□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 CLSTN1O94985 981 aa8.3□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 CFAP70Q5T0N1 1121 aa8.3□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 TICAM2Q86XR7 235 aa8.3□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 NLRP7Q8WX94 980 aa8.3□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 PHF12Q96QT6 1004 aa8.3□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 VRTNQ9H8Y1 702 aa8.3□□□□□ -1.08
ALMS1-IT1-201ENST00000441587 SRPK2P78362 688 aaKnown RBP8.29□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 39.5 ms