RNA–Protein interactions for RNA: ENST00000413899.1

HMGB1P11-201, Transcript of high mobility group box 1 pseudogene 11, humanhuman

BASIC

Gene HMGB1P11, Length 637 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P11-201ENST00000413899 EMP3P54852 163 aa8.78□□□□□ -1
HMGB1P11-201ENST00000413899 HIC1Q14526 733 aa8.78□□□□□ -1
HMGB1P11-201ENST00000413899 TSR1Q2NL82 804 aaKnown RBP8.78□□□□□ -1
HMGB1P11-201ENST00000413899 CDHR5Q9HBB8 845 aa8.78□□□□□ -1
HMGB1P11-201ENST00000413899 GNPATO15228 680 aa8.77□□□□□ -1.01
HMGB1P11-201ENST00000413899 CERKQ8TCT0 537 aa8.77□□□□□ -1.01
HMGB1P11-201ENST00000413899 ERBB3P21860 1342 aa8.77□□□□□ -1.01
HMGB1P11-201ENST00000413899 MARVELD3Q96A59 401 aa8.76□□□□□ -1.01
HMGB1P11-201ENST00000413899 VARS2Q5ST30 1063 aaKnown RBP8.75□□□□□ -1.01
HMGB1P11-201ENST00000413899 PTPREP23469 700 aa8.74□□□□□ -1.01
HMGB1P11-201ENST00000413899 RBM27Q9P2N5 1060 aaKnown RBP8.74□□□□□ -1.01
HMGB1P11-201ENST00000413899 FAM205CA6NFA0 338 aa8.72□□□□□ -1.01
HMGB1P11-201ENST00000413899 PPP1R3GB7ZBB8 358 aa8.72□□□□□ -1.01
HMGB1P11-201ENST00000413899 MAP2K5Q13163 448 aa8.72□□□□□ -1.01
HMGB1P11-201ENST00000413899 PBX2P40425 430 aa8.71□□□□□ -1.02
HMGB1P11-201ENST00000413899 ZNF687Q8N1G0 1237 aa8.71□□□□□ -1.02
HMGB1P11-201ENST00000413899 TTC13Q8NBP0 860 aa8.71□□□□□ -1.02
HMGB1P11-201ENST00000413899 MINK1Q8N4C8 1332 aaPredicted RBP8.71□□□□□ -1.02
HMGB1P11-201ENST00000413899 POTEB3A0JP26 581 aa8.7□□□□□ -1.02
HMGB1P11-201ENST00000413899 COL9A1P20849 921 aa8.7□□□□□ -1.02
HMGB1P11-201ENST00000413899 POTEBQ6S5H4 581 aa8.7□□□□□ -1.02
HMGB1P11-201ENST00000413899 HS3ST6Q96QI5 342 aa8.7□□□□□ -1.02
HMGB1P11-201ENST00000413899 ARHGAP33O14559 1287 aa8.69□□□□□ -1.02
HMGB1P11-201ENST00000413899 FECHP22830 423 aa8.69□□□□□ -1.02
HMGB1P11-201ENST00000413899 PRSS12P56730 875 aa8.69□□□□□ -1.02
HMGB1P11-201ENST00000413899 KRI1Q8N9T8 703 aaKnown RBP8.69□□□□□ -1.02
HMGB1P11-201ENST00000413899 AK7Q96M32 723 aa8.69□□□□□ -1.02
HMGB1P11-201ENST00000413899 SLC24A3Q9HC58 644 aa8.69□□□□□ -1.02
HMGB1P11-201ENST00000413899 IRF6O14896 467 aa8.68□□□□□ -1.02
HMGB1P11-201ENST00000413899 POTEEQ6S8J3 1075 aa8.68□□□□□ -1.02
HMGB1P11-201ENST00000413899 KCNH8Q96L42 1107 aa8.68□□□□□ -1.02
HMGB1P11-201ENST00000413899 KCNK17Q96T54 332 aa8.68□□□□□ -1.02
HMGB1P11-201ENST00000413899 CDCA7LQ96GN5 454 aa8.67□□□□□ -1.02
HMGB1P11-201ENST00000413899 SLC4A5Q9BY07 1137 aa8.67□□□□□ -1.02
HMGB1P11-201ENST00000413899 ONECUT3O60422 494 aaPredicted RBP8.66□□□□□ -1.02
HMGB1P11-201ENST00000413899 PADI6Q6TGC4 694 aa8.66□□□□□ -1.02
HMGB1P11-201ENST00000413899 PSEN2P49810 448 aa8.65□□□□□ -1.02
HMGB1P11-201ENST00000413899 CCDC102AQ96A19 550 aa8.65□□□□□ -1.02
HMGB1P11-201ENST00000413899 ZBED2Q9BTP6 218 aa8.65□□□□□ -1.02
HMGB1P11-201ENST00000413899 TRIM6-TRIM34B2RNG4 842 aa8.63□□□□□ -1.03
HMGB1P11-201ENST00000413899 TRIM66O15016 1216 aa8.63□□□□□ -1.03
HMGB1P11-201ENST00000413899 FAM198AQ9UFP1 575 aa8.63□□□□□ -1.03
HMGB1P11-201ENST00000413899 ADGRG1Q9Y653 693 aa8.63□□□□□ -1.03
HMGB1P11-201ENST00000413899 OATP04181 439 aa8.62□□□□□ -1.03
HMGB1P11-201ENST00000413899 DMRTA1Q5VZB9 504 aa8.62□□□□□ -1.03
HMGB1P11-201ENST00000413899 TSKSQ9UJT2 592 aa8.62□□□□□ -1.03
HMGB1P11-201ENST00000413899 AXIN2Q9Y2T1 843 aa8.62□□□□□ -1.03
HMGB1P11-201ENST00000413899 TK2O00142 265 aa8.6□□□□□ -1.03
HMGB1P11-201ENST00000413899 AMHR2Q16671 573 aa8.6□□□□□ -1.03
HMGB1P11-201ENST00000413899 PROX2Q3B8N5 592 aa8.6□□□□□ -1.03
HMGB1P11-201ENST00000413899 METTL3Q86U44 580 aaKnown RBP8.59□□□□□ -1.03
HMGB1P11-201ENST00000413899 PACS2Q86VP3 889 aa8.59□□□□□ -1.03
HMGB1P11-201ENST00000413899 NBPF26B4DH59 902 aa8.58□□□□□ -1.04
HMGB1P11-201ENST00000413899 RBM46Q8TBY0 533 aaKnown RBP8.58□□□□□ -1.04
HMGB1P11-201ENST00000413899 PXYLP1Q8TE99 480 aa8.58□□□□□ -1.04
HMGB1P11-201ENST00000413899 EYA1Q99502 592 aa8.58□□□□□ -1.04
HMGB1P11-201ENST00000413899 RABGEF1Q9UJ41 708 aa8.58□□□□□ -1.04
HMGB1P11-201ENST00000413899 VPS9D1Q9Y2B5 631 aa8.58□□□□□ -1.04
HMGB1P11-201ENST00000413899 BRPF1P55201 1214 aaPredicted RBP8.57□□□□□ -1.04
HMGB1P11-201ENST00000413899 LSM11P83369 360 aaKnown RBP eCLIP8.57□□□□□ -1.04
HMGB1P11-201ENST00000413899 PDE4DQ08499 809 aa8.57□□□□□ -1.04
HMGB1P11-201ENST00000413899 KIAA1468Q9P260 1216 aa8.57□□□□□ -1.04
HMGB1P11-201ENST00000413899 C3orf80F5H4A9 247 aa8.56□□□□□ -1.04
HMGB1P11-201ENST00000413899 FAM161AQ3B820 660 aa8.56□□□□□ -1.04
HMGB1P11-201ENST00000413899 TATDN2Q93075 761 aa8.56□□□□□ -1.04
HMGB1P11-201ENST00000413899 PHOX2BQ99453 314 aa8.56□□□□□ -1.04
HMGB1P11-201ENST00000413899 POTEGQ6S5H5 508 aa8.55□□□□□ -1.04
HMGB1P11-201ENST00000413899 NUDT18Q6ZVK8 323 aa8.55□□□□□ -1.04
HMGB1P11-201ENST00000413899 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.54□□□□□ -1.04
HMGB1P11-201ENST00000413899 ADGRD1Q6QNK2 874 aa8.54□□□□□ -1.04
HMGB1P11-201ENST00000413899 TMUB1Q9BVT8 246 aa8.54□□□□□ -1.04
HMGB1P11-201ENST00000413899 PNMA3Q9UL41 463 aa8.54□□□□□ -1.04
HMGB1P11-201ENST00000413899 POTEMA6NI47 508 aa8.53□□□□□ -1.04
HMGB1P11-201ENST00000413899 BHMG1C9JSJ3 638 aaPredicted RBP8.53□□□□□ -1.04
HMGB1P11-201ENST00000413899 PARP9Q8IXQ6 854 aa8.53□□□□□ -1.04
HMGB1P11-201ENST00000413899 KRTAP3-3Q9BYR6 98 aa8.53□□□□□ -1.04
HMGB1P11-201ENST00000413899 KRTAP3-2Q9BYR7 98 aa8.53□□□□□ -1.04
HMGB1P11-201ENST00000413899 CLCN1P35523 988 aa8.52□□□□□ -1.05
HMGB1P11-201ENST00000413899 NEUROD2Q15784 382 aa8.52□□□□□ -1.05
HMGB1P11-201ENST00000413899 LAPTM4BQ86VI4 370 aa8.52□□□□□ -1.05
HMGB1P11-201ENST00000413899 RCCD1A6NED2 376 aa8.51□□□□□ -1.05
HMGB1P11-201ENST00000413899 HRO43593 1189 aa8.51□□□□□ -1.05
HMGB1P11-201ENST00000413899 DNAJB2P25686 324 aa8.51□□□□□ -1.05
HMGB1P11-201ENST00000413899 NBPF3Q9H094 633 aa8.51□□□□□ -1.05
HMGB1P11-201ENST00000413899 SMAPO00193 183 aa8.5□□□□□ -1.05
HMGB1P11-201ENST00000413899 FAM98CQ17RN3 349 aaKnown RBP8.5□□□□□ -1.05
HMGB1P11-201ENST00000413899 GPCPD1Q9NPB8 672 aa8.5□□□□□ -1.05
HMGB1P11-201ENST00000413899 MDM2Q00987 491 aaPredicted RBP8.49□□□□□ -1.05
HMGB1P11-201ENST00000413899 TTLL12Q14166 644 aaPredicted RBP8.49□□□□□ -1.05
HMGB1P11-201ENST00000413899 CDAN1Q8IWY9 1227 aa8.49□□□□□ -1.05
HMGB1P11-201ENST00000413899 KDM4CQ9H3R0 1056 aa8.49□□□□□ -1.05
HMGB1P11-201ENST00000413899 TMEM134Q9H6X4 195 aa8.49□□□□□ -1.05
HMGB1P11-201ENST00000413899 GPBP1L1Q9HC44 474 aaPredicted RBP8.49□□□□□ -1.05
HMGB1P11-201ENST00000413899 GIGYF2Q6Y7W6 1299 aaKnown RBP8.48□□□□□ -1.05
HMGB1P11-201ENST00000413899 ANKRD13DQ6ZTN6 518 aa8.48□□□□□ -1.05
HMGB1P11-201ENST00000413899 REPIN1Q9BWE0 567 aaKnown RBP8.48□□□□□ -1.05
HMGB1P11-201ENST00000413899 DAXXQ9UER7 740 aaPredicted RBP8.48□□□□□ -1.05
HMGB1P11-201ENST00000413899 SEPT9Q9UHD8 586 aaPredicted RBP8.48□□□□□ -1.05
HMGB1P11-201ENST00000413899 MRPL50Q8N5N7 158 aaKnown RBP8.46□□□□□ -1.06
HMGB1P11-201ENST00000413899 NLRP7Q8WX94 980 aa8.46□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms