RNA–Protein interactions for RNA: ENST00000406019.1

HMGB1P13-201, Transcript of high mobility group box 1 pseudogene 13, humanhuman

BASIC

Gene HMGB1P13, Length 642 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P13-201ENST00000406019 LSM11P83369 360 aaKnown RBP eCLIP11.57□□□□□ -0.56
HMGB1P13-201ENST00000406019 GRXCR2A6NFK2 248 aa11.56□□□□□ -0.56
HMGB1P13-201ENST00000406019 KCNK17Q96T54 332 aa11.56□□□□□ -0.56
HMGB1P13-201ENST00000406019 COL9A1P20849 921 aa11.54□□□□□ -0.56
HMGB1P13-201ENST00000406019 C6orf132Q5T0Z8 1188 aa11.54□□□□□ -0.56
HMGB1P13-201ENST00000406019 PTPREP23469 700 aa11.53□□□□□ -0.56
HMGB1P13-201ENST00000406019 TSR1Q2NL82 804 aaKnown RBP11.53□□□□□ -0.56
HMGB1P13-201ENST00000406019 RBM33Q96EV2 1170 aaKnown RBP11.52□□□□□ -0.57
HMGB1P13-201ENST00000406019 SLC4A5Q9BY07 1137 aa11.52□□□□□ -0.57
HMGB1P13-201ENST00000406019 ZBED2Q9BTP6 218 aa11.51□□□□□ -0.57
HMGB1P13-201ENST00000406019 PPP1R3GB7ZBB8 358 aa11.5□□□□□ -0.57
HMGB1P13-201ENST00000406019 CDHR5Q9HBB8 845 aa11.5□□□□□ -0.57
HMGB1P13-201ENST00000406019 TK2O00142 265 aa11.49□□□□□ -0.57
HMGB1P13-201ENST00000406019 SPNS2Q8IVW8 549 aa11.49□□□□□ -0.57
HMGB1P13-201ENST00000406019 MAP3K7O43318 606 aa11.48□□□□□ -0.57
HMGB1P13-201ENST00000406019 NPDC1Q9NQX5 325 aaPredicted RBP11.48□□□□□ -0.57
HMGB1P13-201ENST00000406019 HRO43593 1189 aa11.47□□□□□ -0.57
HMGB1P13-201ENST00000406019 ADGRD1Q6QNK2 874 aa11.47□□□□□ -0.57
HMGB1P13-201ENST00000406019 VPS9D1Q9Y2B5 631 aa11.47□□□□□ -0.57
HMGB1P13-201ENST00000406019 ANKRD13DQ6ZTN6 518 aa11.45□□□□□ -0.58
HMGB1P13-201ENST00000406019 GPR37O15354 613 aa11.43□□□□□ -0.58
HMGB1P13-201ENST00000406019 PROX2Q3B8N5 592 aa11.43□□□□□ -0.58
HMGB1P13-201ENST00000406019 BHMG1C9JSJ3 638 aaPredicted RBP11.42□□□□□ -0.58
HMGB1P13-201ENST00000406019 KCNH8Q96L42 1107 aa11.42□□□□□ -0.58
HMGB1P13-201ENST00000406019 RBM26Q5T8P6 1007 aaKnown RBP11.41□□□□□ -0.58
HMGB1P13-201ENST00000406019 FAM198AQ9UFP1 575 aa11.41□□□□□ -0.58
HMGB1P13-201ENST00000406019 TTC13Q8NBP0 860 aa11.4□□□□□ -0.58
HMGB1P13-201ENST00000406019 PTGDRQ13258 359 aa11.39□□□□□ -0.59
HMGB1P13-201ENST00000406019 ONECUT3O60422 494 aaPredicted RBP11.38□□□□□ -0.59
HMGB1P13-201ENST00000406019 TSKSQ9UJT2 592 aa11.38□□□□□ -0.59
HMGB1P13-201ENST00000406019 TRIM6-TRIM34B2RNG4 842 aa11.37□□□□□ -0.59
HMGB1P13-201ENST00000406019 MMRN1Q13201 1228 aa11.37□□□□□ -0.59
HMGB1P13-201ENST00000406019 SMYD5Q6GMV2 418 aa11.37□□□□□ -0.59
HMGB1P13-201ENST00000406019 CERKQ8TCT0 537 aa11.37□□□□□ -0.59
HMGB1P13-201ENST00000406019 RBM27Q9P2N5 1060 aaKnown RBP11.37□□□□□ -0.59
HMGB1P13-201ENST00000406019 C3orf80F5H4A9 247 aa11.36□□□□□ -0.59
HMGB1P13-201ENST00000406019 PRSS12P56730 875 aa11.36□□□□□ -0.59
HMGB1P13-201ENST00000406019 CDCA7LQ96GN5 454 aa11.35□□□□□ -0.59
HMGB1P13-201ENST00000406019 RABGEF1Q9UJ41 708 aa11.35□□□□□ -0.59
HMGB1P13-201ENST00000406019 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.34□□□□□ -0.59
HMGB1P13-201ENST00000406019 PADI6Q6TGC4 694 aa11.32□□□□□ -0.6
HMGB1P13-201ENST00000406019 KIAA1468Q9P260 1216 aa11.32□□□□□ -0.6
HMGB1P13-201ENST00000406019 NUTM2FA1L443 756 aa11.31□□□□□ -0.6
HMGB1P13-201ENST00000406019 MYT1LQ9UL68 1186 aa11.31□□□□□ -0.6
HMGB1P13-201ENST00000406019 FCHSD2O94868 740 aa11.3□□□□□ -0.6
HMGB1P13-201ENST00000406019 HIC1Q14526 733 aa11.26□□□□□ -0.61
HMGB1P13-201ENST00000406019 LMOD2Q6P5Q4 547 aa11.26□□□□□ -0.61
HMGB1P13-201ENST00000406019 GPIHBP1Q8IV16 184 aa11.26□□□□□ -0.61
HMGB1P13-201ENST00000406019 NBPF3Q9H094 633 aa11.26□□□□□ -0.61
HMGB1P13-201ENST00000406019 PLSCR2Q9NRY7 297 aa11.26□□□□□ -0.61
HMGB1P13-201ENST00000406019 FECHP22830 423 aa11.25□□□□□ -0.61
HMGB1P13-201ENST00000406019 LAPTM4BQ86VI4 370 aa11.25□□□□□ -0.61
HMGB1P13-201ENST00000406019 RNF166Q96A37 237 aaPredicted RBP11.25□□□□□ -0.61
HMGB1P13-201ENST00000406019 PACS2Q86VP3 889 aa11.24□□□□□ -0.61
HMGB1P13-201ENST00000406019 SEPT9Q9UHD8 586 aaPredicted RBP11.24□□□□□ -0.61
HMGB1P13-201ENST00000406019 GNPATO15228 680 aa11.23□□□□□ -0.61
HMGB1P13-201ENST00000406019 MRPL50Q8N5N7 158 aaKnown RBP11.23□□□□□ -0.61
HMGB1P13-201ENST00000406019 TATDN2Q93075 761 aa11.23□□□□□ -0.61
HMGB1P13-201ENST00000406019 EYA1Q99502 592 aa11.23□□□□□ -0.61
HMGB1P13-201ENST00000406019 ADGRG1Q9Y653 693 aa11.23□□□□□ -0.61
HMGB1P13-201ENST00000406019 SMAPO00193 183 aa11.22□□□□□ -0.61
HMGB1P13-201ENST00000406019 NBPF26B4DH59 902 aa11.21□□□□□ -0.61
HMGB1P13-201ENST00000406019 FAM98CQ17RN3 349 aaKnown RBP11.21□□□□□ -0.61
HMGB1P13-201ENST00000406019 TULP1O00294 542 aaPredicted RBP11.2□□□□□ -0.62
HMGB1P13-201ENST00000406019 NUDT18Q6ZVK8 323 aa11.2□□□□□ -0.62
HMGB1P13-201ENST00000406019 BCANQ96GW7 911 aa11.2□□□□□ -0.62
HMGB1P13-201ENST00000406019 ZFRQ96KR1 1074 aaKnown RBP11.19□□□□□ -0.62
HMGB1P13-201ENST00000406019 PNMA3Q9UL41 463 aa11.19□□□□□ -0.62
HMGB1P13-201ENST00000406019 FAM161AQ3B820 660 aa11.18□□□□□ -0.62
HMGB1P13-201ENST00000406019 THSD4Q6ZMP0 1018 aa11.16□□□□□ -0.62
HMGB1P13-201ENST00000406019 ZC3H15Q8WU90 426 aaKnown RBP11.16□□□□□ -0.62
HMGB1P13-201ENST00000406019 KCTD12Q96CX2 325 aaKnown RBP11.16□□□□□ -0.62
HMGB1P13-201ENST00000406019 ZMYND10O75800 440 aa11.14□□□□□ -0.63
HMGB1P13-201ENST00000406019 PXYLP1Q8TE99 480 aa11.14□□□□□ -0.63
HMGB1P13-201ENST00000406019 WNT2BQ93097 391 aa11.14□□□□□ -0.63
HMGB1P13-201ENST00000406019 STAC3Q96MF2 364 aa11.13□□□□□ -0.63
HMGB1P13-201ENST00000406019 SOWAHBA6NEL2 793 aa11.12□□□□□ -0.63
HMGB1P13-201ENST00000406019 MAP2K5Q13163 448 aa11.12□□□□□ -0.63
HMGB1P13-201ENST00000406019 METTL3Q86U44 580 aaKnown RBP11.12□□□□□ -0.63
HMGB1P13-201ENST00000406019 PHOX2BQ99453 314 aa11.12□□□□□ -0.63
HMGB1P13-201ENST00000406019 BCAMP50895 628 aa11.11□□□□□ -0.63
HMGB1P13-201ENST00000406019 BARGINQ6ZT62 677 aa11.11□□□□□ -0.63
HMGB1P13-201ENST00000406019 ANKK1Q8NFD2 765 aa11.11□□□□□ -0.63
HMGB1P13-201ENST00000406019 SAMD7Q7Z3H4 446 aa11.09□□□□□ -0.63
HMGB1P13-201ENST00000406019 RBM46Q8TBY0 533 aaKnown RBP11.09□□□□□ -0.63
HMGB1P13-201ENST00000406019 RCCD1A6NED2 376 aa11.08□□□□□ -0.64
HMGB1P13-201ENST00000406019 GOLGA8CPA6NN73 597 aa11.08□□□□□ -0.64
HMGB1P13-201ENST00000406019 IRF6O14896 467 aa11.08□□□□□ -0.64
HMGB1P13-201ENST00000406019 TMEM134Q9H6X4 195 aa11.08□□□□□ -0.64
HMGB1P13-201ENST00000406019 OATP04181 439 aa11.07□□□□□ -0.64
HMGB1P13-201ENST00000406019 MINK1Q8N4C8 1332 aaPredicted RBP11.07□□□□□ -0.64
HMGB1P13-201ENST00000406019 DNAJB2P25686 324 aa11.06□□□□□ -0.64
HMGB1P13-201ENST00000406019 SWT1Q5T5J6 900 aaKnown RBP11.06□□□□□ -0.64
HMGB1P13-201ENST00000406019 LRCH3Q96II8 777 aa11.06□□□□□ -0.64
HMGB1P13-201ENST00000406019 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.06□□□□□ -0.64
HMGB1P13-201ENST00000406019 HCSTQ9UBK5 93 aa11.06□□□□□ -0.64
HMGB1P13-201ENST00000406019 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.05□□□□□ -0.64
HMGB1P13-201ENST00000406019 CCDC102AQ96A19 550 aa11.05□□□□□ -0.64
HMGB1P13-201ENST00000406019 NLRP7Q8WX94 980 aa11.02□□□□□ -0.65
HMGB1P13-201ENST00000406019 WBP1LQ9NX94 342 aa11.02□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms