RNA–Protein interactions for RNA: ENST00000403971.2

HMGB3P19-201, Transcript of high mobility group box 3 pseudogene 19, humanhuman

BASIC

Gene HMGB3P19, Length 560 nt, Biotype processed pseudogene.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB3P19-201ENST00000403971 AK7Q96M32 723 aa10.83□□□□□ -0.68
HMGB3P19-201ENST00000403971 ADAM33Q9BZ11 813 aa10.82□□□□□ -0.68
HMGB3P19-201ENST00000403971 C6orf132Q5T0Z8 1188 aa10.8□□□□□ -0.68
HMGB3P19-201ENST00000403971 MAP2K5Q13163 448 aa10.79□□□□□ -0.68
HMGB3P19-201ENST00000403971 NEUROD2Q15784 382 aa10.79□□□□□ -0.68
HMGB3P19-201ENST00000403971 TRIM66O15016 1216 aa10.78□□□□□ -0.68
HMGB3P19-201ENST00000403971 CCDC102AQ96A19 550 aa10.78□□□□□ -0.68
HMGB3P19-201ENST00000403971 MINK1Q8N4C8 1332 aaPredicted RBP10.78□□□□□ -0.68
HMGB3P19-201ENST00000403971 IRF6O14896 467 aa10.77□□□□□ -0.69
HMGB3P19-201ENST00000403971 PPP4R3BQ5MIZ7 849 aa10.76□□□□□ -0.69
HMGB3P19-201ENST00000403971 GPBP1L1Q9HC44 474 aaPredicted RBP10.74□□□□□ -0.69
HMGB3P19-201ENST00000403971 PDE4DQ08499 809 aa10.73□□□□□ -0.69
HMGB3P19-201ENST00000403971 ST18O60284 1047 aa10.72□□□□□ -0.69
HMGB3P19-201ENST00000403971 COL9A1P20849 921 aa10.72□□□□□ -0.69
HMGB3P19-201ENST00000403971 PADI6Q6TGC4 694 aa10.72□□□□□ -0.69
HMGB3P19-201ENST00000403971 PSDA5PKW4 1024 aaPredicted RBP10.71□□□□□ -0.69
HMGB3P19-201ENST00000403971 FAM161AQ3B820 660 aa10.71□□□□□ -0.69
HMGB3P19-201ENST00000403971 BCL2L12Q9HB09 334 aa10.71□□□□□ -0.69
HMGB3P19-201ENST00000403971 MARVELD3Q96A59 401 aa10.69□□□□□ -0.7
HMGB3P19-201ENST00000403971 CERKQ8TCT0 537 aa10.68□□□□□ -0.7
HMGB3P19-201ENST00000403971 ERBB3P21860 1342 aa10.67□□□□□ -0.7
HMGB3P19-201ENST00000403971 PTPREP23469 700 aa10.67□□□□□ -0.7
HMGB3P19-201ENST00000403971 PRSS12P56730 875 aa10.67□□□□□ -0.7
HMGB3P19-201ENST00000403971 VARS2Q5ST30 1063 aaKnown RBP10.67□□□□□ -0.7
HMGB3P19-201ENST00000403971 FAM163AQ96GL9 167 aaPredicted RBP10.66□□□□□ -0.7
HMGB3P19-201ENST00000403971 CDCA7LQ96GN5 454 aa10.66□□□□□ -0.7
HMGB3P19-201ENST00000403971 KCNK17Q96T54 332 aa10.66□□□□□ -0.7
HMGB3P19-201ENST00000403971 PHOX2BQ99453 314 aa10.66□□□□□ -0.7
HMGB3P19-201ENST00000403971 KDM4CQ9H3R0 1056 aa10.66□□□□□ -0.7
HMGB3P19-201ENST00000403971 FAM198AQ9UFP1 575 aa10.66□□□□□ -0.7
HMGB3P19-201ENST00000403971 EMP3P54852 163 aa10.65□□□□□ -0.7
HMGB3P19-201ENST00000403971 AMHR2Q16671 573 aa10.65□□□□□ -0.7
HMGB3P19-201ENST00000403971 TTC13Q8NBP0 860 aa10.65□□□□□ -0.7
HMGB3P19-201ENST00000403971 PPP1R3GB7ZBB8 358 aa10.64□□□□□ -0.71
HMGB3P19-201ENST00000403971 PARP9Q8IXQ6 854 aa10.64□□□□□ -0.71
HMGB3P19-201ENST00000403971 TMEM132AQ24JP5 1023 aa10.63□□□□□ -0.71
HMGB3P19-201ENST00000403971 NLRP7Q8WX94 980 aa10.63□□□□□ -0.71
HMGB3P19-201ENST00000403971 RBM27Q9P2N5 1060 aaKnown RBP10.63□□□□□ -0.71
HMGB3P19-201ENST00000403971 ADGRG1Q9Y653 693 aa10.63□□□□□ -0.71
HMGB3P19-201ENST00000403971 PSEN2P49810 448 aa10.62□□□□□ -0.71
HMGB3P19-201ENST00000403971 TTLL12Q14166 644 aaPredicted RBP10.62□□□□□ -0.71
HMGB3P19-201ENST00000403971 POTEEQ6S8J3 1075 aa10.62□□□□□ -0.71
HMGB3P19-201ENST00000403971 REPIN1Q9BWE0 567 aaKnown RBP10.62□□□□□ -0.71
HMGB3P19-201ENST00000403971 TSKSQ9UJT2 592 aa10.62□□□□□ -0.71
HMGB3P19-201ENST00000403971 FAM205CA6NFA0 338 aa10.61□□□□□ -0.71
HMGB3P19-201ENST00000403971 C3orf80F5H4A9 247 aa10.61□□□□□ -0.71
HMGB3P19-201ENST00000403971 PROX2Q3B8N5 592 aa10.61□□□□□ -0.71
HMGB3P19-201ENST00000403971 METTL3Q86U44 580 aaKnown RBP10.61□□□□□ -0.71
HMGB3P19-201ENST00000403971 AXIN2Q9Y2T1 843 aa10.61□□□□□ -0.71
HMGB3P19-201ENST00000403971 LCE2DQ5TA82 110 aaPredicted RBP10.6□□□□□ -0.71
HMGB3P19-201ENST00000403971 MDM2Q00987 491 aaPredicted RBP10.59□□□□□ -0.71
HMGB3P19-201ENST00000403971 IL27Q8NEV9 243 aa10.59□□□□□ -0.71
HMGB3P19-201ENST00000403971 PXYLP1Q8TE99 480 aa10.59□□□□□ -0.71
HMGB3P19-201ENST00000403971 POTEB3A0JP26 581 aa10.58□□□□□ -0.72
HMGB3P19-201ENST00000403971 OATP04181 439 aa10.58□□□□□ -0.72
HMGB3P19-201ENST00000403971 POTEBQ6S5H4 581 aa10.58□□□□□ -0.72
HMGB3P19-201ENST00000403971 TRIM6-TRIM34B2RNG4 842 aa10.57□□□□□ -0.72
HMGB3P19-201ENST00000403971 GIGYF2Q6Y7W6 1299 aaKnown RBP10.57□□□□□ -0.72
HMGB3P19-201ENST00000403971 FAM117AQ9C073 453 aa10.57□□□□□ -0.72
HMGB3P19-201ENST00000403971 DMRTA1Q5VZB9 504 aa10.56□□□□□ -0.72
HMGB3P19-201ENST00000403971 ARHGAP33O14559 1287 aa10.55□□□□□ -0.72
HMGB3P19-201ENST00000403971 NUDT18Q6ZVK8 323 aa10.55□□□□□ -0.72
HMGB3P19-201ENST00000403971 RBM46Q8TBY0 533 aaKnown RBP10.55□□□□□ -0.72
HMGB3P19-201ENST00000403971 KCNH8Q96L42 1107 aa10.55□□□□□ -0.72
HMGB3P19-201ENST00000403971 HS3ST6Q96QI5 342 aa10.55□□□□□ -0.72
HMGB3P19-201ENST00000403971 ZBED2Q9BTP6 218 aa10.55□□□□□ -0.72
HMGB3P19-201ENST00000403971 TMUB1Q9BVT8 246 aa10.55□□□□□ -0.72
HMGB3P19-201ENST00000403971 SMAPO00193 183 aa10.54□□□□□ -0.72
HMGB3P19-201ENST00000403971 MS4A1P11836 297 aa10.54□□□□□ -0.72
HMGB3P19-201ENST00000403971 EYA1Q99502 592 aa10.54□□□□□ -0.72
HMGB3P19-201ENST00000403971 PNMA3Q9UL41 463 aa10.54□□□□□ -0.72
HMGB3P19-201ENST00000403971 CLCN1P35523 988 aa10.53□□□□□ -0.72
HMGB3P19-201ENST00000403971 ZNF687Q8N1G0 1237 aa10.53□□□□□ -0.72
HMGB3P19-201ENST00000403971 TATDN2Q93075 761 aa10.53□□□□□ -0.72
HMGB3P19-201ENST00000403971 GPCPD1Q9NPB8 672 aa10.53□□□□□ -0.72
HMGB3P19-201ENST00000403971 PACS2Q86VP3 889 aa10.52□□□□□ -0.73
HMGB3P19-201ENST00000403971 KIAA1468Q9P260 1216 aa10.52□□□□□ -0.73
HMGB3P19-201ENST00000403971 PLEKHG3A1L390 1219 aa10.51□□□□□ -0.73
HMGB3P19-201ENST00000403971 RCCD1A6NED2 376 aa10.51□□□□□ -0.73
HMGB3P19-201ENST00000403971 NBPF26B4DH59 902 aa10.51□□□□□ -0.73
HMGB3P19-201ENST00000403971 PBX2P40425 430 aa10.49□□□□□ -0.73
HMGB3P19-201ENST00000403971 ONECUT3O60422 494 aaPredicted RBP10.48□□□□□ -0.73
HMGB3P19-201ENST00000403971 SSTR3P32745 418 aaPredicted RBP10.48□□□□□ -0.73
HMGB3P19-201ENST00000403971 FAM217BQ9NTX9 383 aaPredicted RBP10.48□□□□□ -0.73
HMGB3P19-201ENST00000403971 GTF3C3Q9Y5Q9 886 aa10.48□□□□□ -0.73
HMGB3P19-201ENST00000403971 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.47□□□□□ -0.73
HMGB3P19-201ENST00000403971 DDRGK1Q96HY6 314 aa10.47□□□□□ -0.73
HMGB3P19-201ENST00000403971 SEPT9Q9UHD8 586 aaPredicted RBP10.47□□□□□ -0.73
HMGB3P19-201ENST00000403971 SLC4A5Q9BY07 1137 aa10.46□□□□□ -0.73
HMGB3P19-201ENST00000403971 VPS9D1Q9Y2B5 631 aa10.46□□□□□ -0.73
HMGB3P19-201ENST00000403971 DNAJB2P25686 324 aa10.45□□□□□ -0.74
HMGB3P19-201ENST00000403971 RABGEF1Q9UJ41 708 aa10.45□□□□□ -0.74
HMGB3P19-201ENST00000403971 BEGAINQ9BUH8 593 aa10.43□□□□□ -0.74
HMGB3P19-201ENST00000403971 TMEM134Q9H6X4 195 aa10.43□□□□□ -0.74
HMGB3P19-201ENST00000403971 DAXXQ9UER7 740 aaPredicted RBP10.43□□□□□ -0.74
HMGB3P19-201ENST00000403971 DDX11L8A8MPP1 907 aa10.4□□□□□ -0.74
HMGB3P19-201ENST00000403971 LSM11P83369 360 aaKnown RBP eCLIP10.4□□□□□ -0.74
HMGB3P19-201ENST00000403971 BHMG1C9JSJ3 638 aaPredicted RBP10.38□□□□□ -0.75
HMGB3P19-201ENST00000403971 SWT1Q5T5J6 900 aaKnown RBP10.38□□□□□ -0.75
HMGB3P19-201ENST00000403971 TK2O00142 265 aa10.37□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 82.8 ms