RNA–Protein interactions for RNA: ENST00000400000.6

VAPA-202, Transcript of VAMP associated protein A, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VAPA, Length 6,815 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-202ENST00000400000 CEP164Q9UPV0 1460 aa17.21■□□□□ 0.34
VAPA-202ENST00000400000 TDRD9Q8NDG6 1382 aaKnown RBP17.2■□□□□ 0.34
VAPA-202ENST00000400000 RWDD1Q9H446 243 aaPredicted RBP17.2■□□□□ 0.34
VAPA-202ENST00000400000 EIF2S2P20042 333 aaKnown RBP17.19■□□□□ 0.34
VAPA-202ENST00000400000 CECR2Q9BXF3 1484 aa17.19■□□□□ 0.34
VAPA-202ENST00000400000 BCL11BQ9C0K0 894 aaPredicted RBP17.19■□□□□ 0.34
VAPA-202ENST00000400000 SLC4A3P48751 1232 aa17.18■□□□□ 0.34
VAPA-202ENST00000400000 FOSBP53539 338 aa17.18■□□□□ 0.34
VAPA-202ENST00000400000 GBP4Q96PP9 640 aa17.18■□□□□ 0.34
VAPA-202ENST00000400000 SOGA1O94964 1423 aa17.17■□□□□ 0.34
VAPA-202ENST00000400000 PLIN1O60240 522 aa17.17■□□□□ 0.34
VAPA-202ENST00000400000 KDM4AO75164 1064 aa17.17■□□□□ 0.34
VAPA-202ENST00000400000 ZNF428Q96B54 188 aa17.16■□□□□ 0.34
VAPA-202ENST00000400000 MPHOSPH9Q99550 1183 aa17.16■□□□□ 0.34
VAPA-202ENST00000400000 PATL2C9JE40 543 aaKnown RBP17.16■□□□□ 0.34
VAPA-202ENST00000400000 TPM4P67936 248 aa17.14■□□□□ 0.33
VAPA-202ENST00000400000 SF3A1Q15459 793 aaKnown RBP17.14■□□□□ 0.33
VAPA-202ENST00000400000 NUTM2GQ5VZR2 741 aa17.14■□□□□ 0.33
VAPA-202ENST00000400000 CCAR2Q8N163 923 aaKnown RBP17.13■□□□□ 0.33
VAPA-202ENST00000400000 ARHGAP35Q9NRY4 1499 aa17.13■□□□□ 0.33
VAPA-202ENST00000400000 CALD1Q05682 793 aaKnown RBP17.12■□□□□ 0.33
VAPA-202ENST00000400000 TPD52L1Q16890 204 aaPredicted RBP17.12■□□□□ 0.33
VAPA-202ENST00000400000 EFCAB2Q5VUJ9 269 aa17.12■□□□□ 0.33
VAPA-202ENST00000400000 PPP1R1BQ9UD71 204 aaPredicted RBP17.12■□□□□ 0.33
VAPA-202ENST00000400000 MCTP1Q6DN14 999 aa17.12■□□□□ 0.33
VAPA-202ENST00000400000 ABCC8Q09428 1581 aa17.11■□□□□ 0.33
VAPA-202ENST00000400000 TNIKQ9UKE5 1360 aa17.11■□□□□ 0.33
VAPA-202ENST00000400000 H3BQV1 296 aa17.11■□□□□ 0.33
VAPA-202ENST00000400000 IFFO2Q5TF58 517 aa17.11■□□□□ 0.33
VAPA-202ENST00000400000 MTMR7Q9Y216 660 aa17.11■□□□□ 0.33
VAPA-202ENST00000400000 CEP89Q96ST8 783 aa17.11■□□□□ 0.33
VAPA-202ENST00000400000 C1orf141Q5JVX7 400 aa17.1■□□□□ 0.33
VAPA-202ENST00000400000 MINK1Q8N4C8 1332 aaPredicted RBP17.1■□□□□ 0.33
VAPA-202ENST00000400000 ANKRD45Q5TZF3 282 aa17.1■□□□□ 0.33
VAPA-202ENST00000400000 SETD5Q9C0A6 1442 aa17.1■□□□□ 0.33
VAPA-202ENST00000400000 TERF2IPQ9NYB0 399 aa17.1■□□□□ 0.33
VAPA-202ENST00000400000 KRI1Q8N9T8 703 aaKnown RBP17.09■□□□□ 0.33
VAPA-202ENST00000400000 FYB1O15117 783 aa17.09■□□□□ 0.33
VAPA-202ENST00000400000 CNKSR2Q8WXI2 1034 aa17.09■□□□□ 0.33
VAPA-202ENST00000400000 HTATSF1O43719 755 aaKnown RBP17.09■□□□□ 0.33
VAPA-202ENST00000400000 TRIM34Q9BYJ4 488 aa17.09■□□□□ 0.33
VAPA-202ENST00000400000 DHX16O60231 1041 aaKnown RBP17.08■□□□□ 0.33
VAPA-202ENST00000400000 PMFBP1Q8TBY8 1022 aa17.08■□□□□ 0.32
VAPA-202ENST00000400000 USP35Q9P2H5 1018 aa17.08■□□□□ 0.32
VAPA-202ENST00000400000 TCEAL9Q9UHQ7 104 aa17.08■□□□□ 0.32
VAPA-202ENST00000400000 KIF16BQ96L93 1317 aa17.08■□□□□ 0.32
VAPA-202ENST00000400000 APPP05067 770 aa17.08■□□□□ 0.32
VAPA-202ENST00000400000 CTDP1Q9Y5B0 961 aaPredicted RBP17.07■□□□□ 0.32
VAPA-202ENST00000400000 CARMIL2Q6F5E8 1435 aa17.07■□□□□ 0.32
VAPA-202ENST00000400000 FHAD1B1AJZ9 1412 aa17.07■□□□□ 0.32
VAPA-202ENST00000400000 HMMRO75330 724 aa17.07■□□□□ 0.32
VAPA-202ENST00000400000 CENPJQ9HC77 1338 aaPredicted RBP17.07■□□□□ 0.32
VAPA-202ENST00000400000 FAM177BA6PVY3 158 aa17.07■□□□□ 0.32
VAPA-202ENST00000400000 CWC22Q9HCG8 908 aaKnown RBP17.06■□□□□ 0.32
VAPA-202ENST00000400000 SYAP1Q96A49 352 aaPredicted RBP17.05■□□□□ 0.32
VAPA-202ENST00000400000 GOLGA6L3A6NEY3 463 aa17.05■□□□□ 0.32
VAPA-202ENST00000400000 FAM184AQ8NB25 1140 aa17.05■□□□□ 0.32
VAPA-202ENST00000400000 CCDC180Q9P1Z9 1646 aa17.04■□□□□ 0.32
VAPA-202ENST00000400000 PCMTD1Q96MG8 357 aaPredicted RBP17.03■□□□□ 0.32
VAPA-202ENST00000400000 VPS37DQ86XT2 251 aa17.03■□□□□ 0.32
VAPA-202ENST00000400000 TNNT3P45378 269 aaPredicted RBP17.03■□□□□ 0.32
VAPA-202ENST00000400000 PSME1Q06323 249 aa17.03■□□□□ 0.32
VAPA-202ENST00000400000 AKAP17AQ02040 695 aaKnown RBP17.03■□□□□ 0.32
VAPA-202ENST00000400000 GOLGA6L1Q8N7Z2 621 aa17.02■□□□□ 0.32
VAPA-202ENST00000400000 TTC5Q8N0Z6 440 aa17.01■□□□□ 0.31
VAPA-202ENST00000400000 ZNF592Q92610 1267 aa17.01■□□□□ 0.31
VAPA-202ENST00000400000 CFAP44Q96MT7 982 aa17.01■□□□□ 0.31
VAPA-202ENST00000400000 PANK3Q9H999 370 aa17.01■□□□□ 0.31
VAPA-202ENST00000400000 TPM3P06753 285 aa17.01■□□□□ 0.31
VAPA-202ENST00000400000 L3MBTL2Q969R5 705 aa17.01■□□□□ 0.31
VAPA-202ENST00000400000 RAB3GAP2Q9H2M9 1393 aa17.01■□□□□ 0.31
VAPA-202ENST00000400000 RALBP1Q15311 655 aa17■□□□□ 0.31
VAPA-202ENST00000400000 COG3Q96JB2 828 aa16.99■□□□□ 0.31
VAPA-202ENST00000400000 AIMP1Q12904 312 aaKnown RBP16.99■□□□□ 0.31
VAPA-202ENST00000400000 EIF3AQ14152 1382 aaKnown RBP16.99■□□□□ 0.31
VAPA-202ENST00000400000 TEFQ10587 303 aa16.99■□□□□ 0.31
VAPA-202ENST00000400000 C9orf78Q9NZ63 289 aaPredicted RBP16.99■□□□□ 0.31
VAPA-202ENST00000400000 ANKRD30AQ9BXX3 1397 aa16.98■□□□□ 0.31
VAPA-202ENST00000400000 ST18O60284 1047 aa16.97■□□□□ 0.31
VAPA-202ENST00000400000 NOL10Q9BSC4 688 aaKnown RBP16.97■□□□□ 0.31
VAPA-202ENST00000400000 ANO2Q9NQ90 1003 aa16.97■□□□□ 0.31
VAPA-202ENST00000400000 CCDC34Q96HJ3 373 aa16.96■□□□□ 0.31
VAPA-202ENST00000400000 COG6Q9Y2V7 657 aa16.96■□□□□ 0.31
VAPA-202ENST00000400000 CCER2I3L3R5 266 aa16.96■□□□□ 0.31
VAPA-202ENST00000400000 FHOD3Q2V2M9 1422 aa16.96■□□□□ 0.3
VAPA-202ENST00000400000 HMOX1P09601 288 aa16.95■□□□□ 0.3
VAPA-202ENST00000400000 ST20-MTHFSA0A0A6YYL1 179 aa16.94■□□□□ 0.3
VAPA-202ENST00000400000 CCDC27Q2M243 656 aa16.94■□□□□ 0.3
VAPA-202ENST00000400000 NUTM2BA6NNL0 878 aaPredicted RBP16.94■□□□□ 0.3
VAPA-202ENST00000400000 NUTM2EB1AL46 878 aaPredicted RBP16.94■□□□□ 0.3
VAPA-202ENST00000400000 NFXL1Q6ZNB6 911 aa16.94■□□□□ 0.3
VAPA-202ENST00000400000 NUTM2AQ8IVF1 878 aaPredicted RBP16.94■□□□□ 0.3
VAPA-202ENST00000400000 STK11IPQ8N1F8 1099 aa16.94■□□□□ 0.3
VAPA-202ENST00000400000 SYNE3Q6ZMZ3 975 aa16.93■□□□□ 0.3
VAPA-202ENST00000400000 CRBNQ96SW2 442 aa16.93■□□□□ 0.3
VAPA-202ENST00000400000 CSPP1Q1MSJ5 1256 aa16.93■□□□□ 0.3
VAPA-202ENST00000400000 DIAPH3Q9NSV4 1193 aa16.93■□□□□ 0.3
VAPA-202ENST00000400000 TSR1Q2NL82 804 aaKnown RBP16.92■□□□□ 0.3
VAPA-202ENST00000400000 LMOD3Q0VAK6 560 aa16.92■□□□□ 0.3
VAPA-202ENST00000400000 GOLGA6L19H0YKK7 550 aa16.91■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 150.5 ms