RNA–Protein interactions for RNA: ENST00000381753.8

LIMCH1-202, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,705 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-202ENST00000381753 HIRIP3Q9BW71 556 aaPredicted RBP11.81□□□□□ -0.52
LIMCH1-202ENST00000381753 TTLL12Q14166 644 aaPredicted RBP11.8□□□□□ -0.52
LIMCH1-202ENST00000381753 DDX10Q13206 875 aaKnown RBP11.8□□□□□ -0.52
LIMCH1-202ENST00000381753 CALD1Q05682 793 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-202ENST00000381753 C8orf37Q96NL8 207 aa11.79□□□□□ -0.52
LIMCH1-202ENST00000381753 HDAC5Q9UQL6 1122 aa11.79□□□□□ -0.52
LIMCH1-202ENST00000381753 CLEC11AQ9Y240 323 aa11.79□□□□□ -0.52
LIMCH1-202ENST00000381753 MROH2BQ7Z745 1585 aa11.78□□□□□ -0.52
LIMCH1-202ENST00000381753 DDX54Q8TDD1 881 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-202ENST00000381753 ANP32BQ92688 251 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-202ENST00000381753 IFT140Q96RY7 1462 aa11.78□□□□□ -0.52
LIMCH1-202ENST00000381753 FAM177BA6PVY3 158 aa11.77□□□□□ -0.52
LIMCH1-202ENST00000381753 HNRNPUQ00839 825 aaKnown RBP eCLIP11.77□□□□□ -0.52
LIMCH1-202ENST00000381753 TOMM22Q9NS69 142 aa11.77□□□□□ -0.52
LIMCH1-202ENST00000381753 DISP3Q9P2K9 1392 aa11.77□□□□□ -0.52
LIMCH1-202ENST00000381753 UACAQ9BZF9 1416 aa11.77□□□□□ -0.52
LIMCH1-202ENST00000381753 ABTB2Q8N961 1025 aa11.77□□□□□ -0.52
LIMCH1-202ENST00000381753 U2AF1L5P0DN76 240 aaPredicted RBP11.77□□□□□ -0.53
LIMCH1-202ENST00000381753 U2AF1Q01081 240 aaKnown RBP eCLIP11.77□□□□□ -0.53
LIMCH1-202ENST00000381753 MARCH6O60337 910 aa11.76□□□□□ -0.53
LIMCH1-202ENST00000381753 CCDC88BA6NC98 1476 aa11.75□□□□□ -0.53
LIMCH1-202ENST00000381753 HSPA2P54652 639 aa11.75□□□□□ -0.53
LIMCH1-202ENST00000381753 SLC26A8Q96RN1 970 aa11.75□□□□□ -0.53
LIMCH1-202ENST00000381753 NLRP6P59044 892 aa11.75□□□□□ -0.53
LIMCH1-202ENST00000381753 GNL2Q13823 731 aaKnown RBP11.75□□□□□ -0.53
LIMCH1-202ENST00000381753 GRIN2BQ13224 1484 aa11.75□□□□□ -0.53
LIMCH1-202ENST00000381753 FRAT1Q92837 279 aaPredicted RBP11.74□□□□□ -0.53
LIMCH1-202ENST00000381753 NBR1Q14596 966 aa11.74□□□□□ -0.53
LIMCH1-202ENST00000381753 ARHGAP35Q9NRY4 1499 aa11.73□□□□□ -0.53
LIMCH1-202ENST00000381753 XPCQ01831 940 aaPredicted RBP11.73□□□□□ -0.53
LIMCH1-202ENST00000381753 RAPGEF2Q9Y4G8 1499 aa11.72□□□□□ -0.53
LIMCH1-202ENST00000381753 ROCK2O75116 1388 aaKnown RBP11.72□□□□□ -0.53
LIMCH1-202ENST00000381753 CEBPAP49715 358 aaPredicted RBP11.71□□□□□ -0.53
LIMCH1-202ENST00000381753 EVC2Q86UK5 1308 aa11.71□□□□□ -0.53
LIMCH1-202ENST00000381753 DCAF1Q9Y4B6 1507 aa11.71□□□□□ -0.53
LIMCH1-202ENST00000381753 NEXNQ0ZGT2 675 aa11.71□□□□□ -0.53
LIMCH1-202ENST00000381753 NESP48681 1621 aa11.71□□□□□ -0.53
LIMCH1-202ENST00000381753 NCLP19338 710 aaKnown RBP11.71□□□□□ -0.54
LIMCH1-202ENST00000381753 ANO8Q9HCE9 1232 aaPredicted RBP11.71□□□□□ -0.54
LIMCH1-202ENST00000381753 RAD54L2Q9Y4B4 1467 aa11.71□□□□□ -0.54
LIMCH1-202ENST00000381753 PMFBP1Q8TBY8 1022 aa11.7□□□□□ -0.54
LIMCH1-202ENST00000381753 FHOD3Q2V2M9 1422 aa11.7□□□□□ -0.54
LIMCH1-202ENST00000381753 RBM5P52756 815 aaKnown RBP eCLIP11.7□□□□□ -0.54
LIMCH1-202ENST00000381753 TATP17735 454 aaPredicted RBP11.7□□□□□ -0.54
LIMCH1-202ENST00000381753 TPRNQ4KMQ1 711 aa11.7□□□□□ -0.54
LIMCH1-202ENST00000381753 MS4A1P11836 297 aa11.69□□□□□ -0.54
LIMCH1-202ENST00000381753 HSP90B1P14625 803 aaKnown RBP11.69□□□□□ -0.54
LIMCH1-202ENST00000381753 AFAP1Q8N556 730 aa11.69□□□□□ -0.54
LIMCH1-202ENST00000381753 GPR162Q16538 588 aa11.69□□□□□ -0.54
LIMCH1-202ENST00000381753 PRDM2Q13029 1718 aa11.69□□□□□ -0.54
LIMCH1-202ENST00000381753 LMOD3Q0VAK6 560 aa11.69□□□□□ -0.54
LIMCH1-202ENST00000381753 ARHGAP5Q13017 1502 aa11.69□□□□□ -0.54
LIMCH1-202ENST00000381753 SENP3-EIF4A1A0A087X0R7 540 aa11.69□□□□□ -0.54
LIMCH1-202ENST00000381753 MYCNP04198 464 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-202ENST00000381753 KIF6Q6ZMV9 814 aa11.68□□□□□ -0.54
LIMCH1-202ENST00000381753 ZRANB1Q9UGI0 708 aa11.68□□□□□ -0.54
LIMCH1-202ENST00000381753 MSH6P52701 1360 aa11.68□□□□□ -0.54
LIMCH1-202ENST00000381753 TCERG1O14776 1098 aaKnown RBP11.68□□□□□ -0.54
LIMCH1-202ENST00000381753 AMER1Q5JTC6 1135 aaPredicted RBP11.68□□□□□ -0.54
LIMCH1-202ENST00000381753 APBB1O00213 710 aa11.67□□□□□ -0.54
LIMCH1-202ENST00000381753 EIF2S2P20042 333 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-202ENST00000381753 GPATCH3Q96I76 525 aa11.67□□□□□ -0.54
LIMCH1-202ENST00000381753 ZNF219Q9P2Y4 722 aaPredicted RBP11.67□□□□□ -0.54
LIMCH1-202ENST00000381753 SYNJ2O15056 1496 aa11.67□□□□□ -0.54
LIMCH1-202ENST00000381753 DHX16O60231 1041 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-202ENST00000381753 SLC4A10Q6U841 1118 aa11.67□□□□□ -0.54
LIMCH1-202ENST00000381753 DHX57Q6P158 1386 aaKnown RBP11.67□□□□□ -0.54
LIMCH1-202ENST00000381753 NLRP13Q86W25 1043 aa11.67□□□□□ -0.54
LIMCH1-202ENST00000381753 SLC4A3P48751 1232 aa11.66□□□□□ -0.54
LIMCH1-202ENST00000381753 BICDL1Q6ZP65 573 aa11.66□□□□□ -0.54
LIMCH1-202ENST00000381753 EIF5BO60841 1220 aaKnown RBP11.66□□□□□ -0.54
LIMCH1-202ENST00000381753 CD109Q6YHK3 1445 aa11.66□□□□□ -0.54
LIMCH1-202ENST00000381753 SPDYE4A6NLX3 237 aa11.66□□□□□ -0.54
LIMCH1-202ENST00000381753 ANP32EQ9BTT0 268 aa11.66□□□□□ -0.54
LIMCH1-202ENST00000381753 BAG6P46379 1132 aa11.65□□□□□ -0.54
LIMCH1-202ENST00000381753 DNAJC5Q9H3Z4 198 aa11.65□□□□□ -0.54
LIMCH1-202ENST00000381753 ZPR1O75312 459 aa11.65□□□□□ -0.54
LIMCH1-202ENST00000381753 SMG6Q86US8 1419 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-202ENST00000381753 ANP32AP39687 249 aaKnown RBP11.65□□□□□ -0.54
LIMCH1-202ENST00000381753 AK7Q96M32 723 aa11.65□□□□□ -0.55
LIMCH1-202ENST00000381753 SNAPC4Q5SXM2 1469 aa11.64□□□□□ -0.55
LIMCH1-202ENST00000381753 AKNAQ7Z591 1439 aa11.64□□□□□ -0.55
LIMCH1-202ENST00000381753 TMEM87AQ8NBN3 555 aa11.64□□□□□ -0.55
LIMCH1-202ENST00000381753 FGD5Q6ZNL6 1462 aa11.64□□□□□ -0.55
LIMCH1-202ENST00000381753 IKQ13123 557 aaPredicted RBP11.63□□□□□ -0.55
LIMCH1-202ENST00000381753 LRPPRCP42704 1394 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-202ENST00000381753 ZC3H6P61129 1189 aaKnown RBP11.63□□□□□ -0.55
LIMCH1-202ENST00000381753 CADPS2Q86UW7 1296 aa11.62□□□□□ -0.55
LIMCH1-202ENST00000381753 DDX58O95786 925 aaKnown RBP11.62□□□□□ -0.55
LIMCH1-202ENST00000381753 CABP4P57796 275 aa11.62□□□□□ -0.55
LIMCH1-202ENST00000381753 SMC4Q9NTJ3 1288 aa11.62□□□□□ -0.55
LIMCH1-202ENST00000381753 STK32BQ9NY57 414 aa11.62□□□□□ -0.55
LIMCH1-202ENST00000381753 RASSF8Q8NHQ8 419 aa11.61□□□□□ -0.55
LIMCH1-202ENST00000381753 CCDC43Q96MW1 224 aaKnown RBP11.61□□□□□ -0.55
LIMCH1-202ENST00000381753 SCAPERQ9BY12 1400 aa11.61□□□□□ -0.55
LIMCH1-202ENST00000381753 KIAA1211Q6ZU35 1233 aa11.61□□□□□ -0.55
LIMCH1-202ENST00000381753 CCDC144AA2RUR9 1427 aa11.61□□□□□ -0.55
LIMCH1-202ENST00000381753 WWC2Q6AWC2 1192 aa11.6□□□□□ -0.55
LIMCH1-202ENST00000381753 SPG7Q9UQ90 795 aa11.6□□□□□ -0.55
LIMCH1-202ENST00000381753 TMOD2Q9NZR1 351 aa11.6□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 105.1 ms