RNA–Protein interactions for RNA: ENST00000377047.8

GPC6-201, Transcript of glypican 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene GPC6, Length 6,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC6-201ENST00000377047 CLUAP1Q96AJ1 413 aa17.12■□□□□ 0.33
GPC6-201ENST00000377047 FRAT2O75474 233 aaPredicted RBP17.12■□□□□ 0.33
GPC6-201ENST00000377047 C1orf141Q5JVX7 400 aa17.11■□□□□ 0.33
GPC6-201ENST00000377047 MINK1Q8N4C8 1332 aaPredicted RBP17.11■□□□□ 0.33
GPC6-201ENST00000377047 DRC7Q8IY82 874 aa17.11■□□□□ 0.33
GPC6-201ENST00000377047 PMFBP1Q8TBY8 1022 aa17.11■□□□□ 0.33
GPC6-201ENST00000377047 RRP7AQ9Y3A4 280 aaKnown RBP17.1■□□□□ 0.33
GPC6-201ENST00000377047 MSH5O43196 834 aa17.1■□□□□ 0.33
GPC6-201ENST00000377047 EVC2Q86UK5 1308 aa17.09■□□□□ 0.33
GPC6-201ENST00000377047 HSP90B1P14625 803 aaKnown RBP17.09■□□□□ 0.33
GPC6-201ENST00000377047 NLRP13Q86W25 1043 aa17.09■□□□□ 0.33
GPC6-201ENST00000377047 MEX3CQ5U5Q3 659 aaKnown RBP17.09■□□□□ 0.33
GPC6-201ENST00000377047 ST20-MTHFSA0A0A6YYL1 179 aa17.08■□□□□ 0.33
GPC6-201ENST00000377047 PANK3Q9H999 370 aa17.08■□□□□ 0.33
GPC6-201ENST00000377047 CENPJQ9HC77 1338 aaPredicted RBP17.08■□□□□ 0.33
GPC6-201ENST00000377047 GAPVD1Q14C86 1478 aa17.07■□□□□ 0.32
GPC6-201ENST00000377047 ERICH6BQ5W0A0 696 aa17.06■□□□□ 0.32
GPC6-201ENST00000377047 NAP1L5Q96NT1 182 aaPredicted RBP17.05■□□□□ 0.32
GPC6-201ENST00000377047 MFAP1P55081 439 aaKnown RBP17.05■□□□□ 0.32
GPC6-201ENST00000377047 CGNL1Q0VF96 1302 aa17.05■□□□□ 0.32
GPC6-201ENST00000377047 KIF15Q9NS87 1388 aa17.05■□□□□ 0.32
GPC6-201ENST00000377047 TOMM22Q9NS69 142 aa17.05■□□□□ 0.32
GPC6-201ENST00000377047 PSME1Q06323 249 aa17.04■□□□□ 0.32
GPC6-201ENST00000377047 ELL2O00472 640 aaPredicted RBP17.03■□□□□ 0.32
GPC6-201ENST00000377047 FGD5Q6ZNL6 1462 aa17.03■□□□□ 0.32
GPC6-201ENST00000377047 RUSC2Q8N2Y8 1516 aa17.03■□□□□ 0.32
GPC6-201ENST00000377047 NGEFQ8N5V2 710 aa17.02■□□□□ 0.32
GPC6-201ENST00000377047 PRDM2Q13029 1718 aa17.02■□□□□ 0.32
GPC6-201ENST00000377047 TEFQ10587 303 aa17.02■□□□□ 0.32
GPC6-201ENST00000377047 RAD54L2Q9Y4B4 1467 aa17.02■□□□□ 0.32
GPC6-201ENST00000377047 PHLDB1Q86UU1 1377 aa17.02■□□□□ 0.31
GPC6-201ENST00000377047 TTC5Q8N0Z6 440 aa17.01■□□□□ 0.31
GPC6-201ENST00000377047 HTATSF1O43719 755 aaKnown RBP17.01■□□□□ 0.31
GPC6-201ENST00000377047 SYTL4Q96C24 671 aaPredicted RBP17.01■□□□□ 0.31
GPC6-201ENST00000377047 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.01■□□□□ 0.31
GPC6-201ENST00000377047 NOL8Q76FK4 1167 aaKnown RBP17.01■□□□□ 0.31
GPC6-201ENST00000377047 MYBBP1AQ9BQG0 1328 aaKnown RBP17■□□□□ 0.31
GPC6-201ENST00000377047 CHAF1AQ13111 956 aaPredicted RBP16.99■□□□□ 0.31
GPC6-201ENST00000377047 GBP4Q96PP9 640 aa16.99■□□□□ 0.31
GPC6-201ENST00000377047 AMER1Q5JTC6 1135 aaPredicted RBP16.98■□□□□ 0.31
GPC6-201ENST00000377047 ABCF1Q8NE71 845 aaKnown RBP eCLIP16.98■□□□□ 0.31
GPC6-201ENST00000377047 RTN4Q9NQC3 1192 aaKnown RBP16.98■□□□□ 0.31
GPC6-201ENST00000377047 SLKQ9H2G2 1235 aaPredicted RBP16.98■□□□□ 0.31
GPC6-201ENST00000377047 RASSF8Q8NHQ8 419 aa16.98■□□□□ 0.31
GPC6-201ENST00000377047 EIF2S2P20042 333 aaKnown RBP16.97■□□□□ 0.31
GPC6-201ENST00000377047 KIAA2012Q0VF49 1180 aa16.97■□□□□ 0.31
GPC6-201ENST00000377047 MSNP26038 577 aaKnown RBP16.96■□□□□ 0.31
GPC6-201ENST00000377047 ATF3P18847 181 aa16.96■□□□□ 0.31
GPC6-201ENST00000377047 VPS53Q5VIR6 699 aa16.96■□□□□ 0.31
GPC6-201ENST00000377047 BCL2L13Q9BXK5 485 aa16.96■□□□□ 0.31
GPC6-201ENST00000377047 PDE3BQ13370 1112 aa16.96■□□□□ 0.3
GPC6-201ENST00000377047 AQRO60306 1485 aaKnown RBP eCLIP16.95■□□□□ 0.3
GPC6-201ENST00000377047 TCERG1O14776 1098 aaKnown RBP16.95■□□□□ 0.3
GPC6-201ENST00000377047 L1TD1Q5T7N2 865 aaKnown RBP16.94■□□□□ 0.3
GPC6-201ENST00000377047 USP47Q96K76 1375 aa16.94■□□□□ 0.3
GPC6-201ENST00000377047 NECTIN2Q92692 538 aa16.93■□□□□ 0.3
GPC6-201ENST00000377047 FOXD4L1Q9NU39 408 aa16.93■□□□□ 0.3
GPC6-201ENST00000377047 NEXNQ0ZGT2 675 aa16.93■□□□□ 0.3
GPC6-201ENST00000377047 PTMSP20962 102 aa16.92■□□□□ 0.3
GPC6-201ENST00000377047 RILPL2Q969X0 211 aa16.92■□□□□ 0.3
GPC6-201ENST00000377047 MARCH6O60337 910 aa16.92■□□□□ 0.3
GPC6-201ENST00000377047 GZF1Q9H116 711 aaPredicted RBP16.92■□□□□ 0.3
GPC6-201ENST00000377047 DIAPH1O60610 1272 aaKnown RBP16.92■□□□□ 0.3
GPC6-201ENST00000377047 CCDC34Q96HJ3 373 aa16.91■□□□□ 0.3
GPC6-201ENST00000377047 MYOM3Q5VTT5 1437 aa16.91■□□□□ 0.3
GPC6-201ENST00000377047 TPM4P67936 248 aa16.9■□□□□ 0.3
GPC6-201ENST00000377047 ZNF644Q9H582 1327 aaPredicted RBP16.9■□□□□ 0.3
GPC6-201ENST00000377047 C9orf78Q9NZ63 289 aaPredicted RBP16.9■□□□□ 0.3
GPC6-201ENST00000377047 IGF1RP08069 1367 aa16.9■□□□□ 0.3
GPC6-201ENST00000377047 SYAP1Q96A49 352 aaPredicted RBP16.9■□□□□ 0.3
GPC6-201ENST00000377047 KIF16BQ96L93 1317 aa16.89■□□□□ 0.29
GPC6-201ENST00000377047 CREBRFQ8IUR6 639 aa16.88■□□□□ 0.29
GPC6-201ENST00000377047 ANKRD45Q5TZF3 282 aa16.88■□□□□ 0.29
GPC6-201ENST00000377047 RBM19Q9Y4C8 960 aaKnown RBP16.88■□□□□ 0.29
GPC6-201ENST00000377047 NUTM2GQ5VZR2 741 aa16.88■□□□□ 0.29
GPC6-201ENST00000377047 DHX57Q6P158 1386 aaKnown RBP16.88■□□□□ 0.29
GPC6-201ENST00000377047 E9PSI1 815 aa16.87■□□□□ 0.29
GPC6-201ENST00000377047 NOL10Q9BSC4 688 aaKnown RBP16.87■□□□□ 0.29
GPC6-201ENST00000377047 KLHL34Q8N239 644 aa16.87■□□□□ 0.29
GPC6-201ENST00000377047 FBXW7Q969H0 707 aa16.87■□□□□ 0.29
GPC6-201ENST00000377047 ZKSCAN2Q63HK3 967 aa16.87■□□□□ 0.29
GPC6-201ENST00000377047 TRIM34Q9BYJ4 488 aa16.87■□□□□ 0.29
GPC6-201ENST00000377047 RAD21O60216 631 aa16.86■□□□□ 0.29
GPC6-201ENST00000377047 PHF23Q9BUL5 403 aaPredicted RBP16.86■□□□□ 0.29
GPC6-201ENST00000377047 ARHGAP5Q13017 1502 aa16.86■□□□□ 0.29
GPC6-201ENST00000377047 CSPP1Q1MSJ5 1256 aa16.86■□□□□ 0.29
GPC6-201ENST00000377047 ST18O60284 1047 aa16.85■□□□□ 0.29
GPC6-201ENST00000377047 RIPK4P57078 832 aa16.85■□□□□ 0.29
GPC6-201ENST00000377047 RAPGEF4Q8WZA2 1011 aa16.85■□□□□ 0.29
GPC6-201ENST00000377047 APAF1O14727 1248 aa16.85■□□□□ 0.29
GPC6-201ENST00000377047 FOXD4L5Q5VV16 416 aaPredicted RBP16.85■□□□□ 0.29
GPC6-201ENST00000377047 FOXD4L4Q8WXT5 416 aaPredicted RBP16.85■□□□□ 0.29
GPC6-201ENST00000377047 PLIN1O60240 522 aa16.84■□□□□ 0.29
GPC6-201ENST00000377047 VPS37DQ86XT2 251 aa16.84■□□□□ 0.29
GPC6-201ENST00000377047 DDX58O95786 925 aaKnown RBP16.84■□□□□ 0.29
GPC6-201ENST00000377047 AMOTL1Q8IY63 956 aa16.84■□□□□ 0.29
GPC6-201ENST00000377047 KIF3AQ9Y496 699 aa16.84■□□□□ 0.29
GPC6-201ENST00000377047 CUX1P39880 1505 aa16.83■□□□□ 0.29
GPC6-201ENST00000377047 SF3A1Q15459 793 aaKnown RBP16.83■□□□□ 0.29
GPC6-201ENST00000377047 NLRP2Q9NX02 1062 aa16.83■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 23.4 ms