RNA–Protein interactions for RNA: ENST00000362455.1

RNU4-39P-201, Transcript of RNA, U4 small nuclear 39, pseudogene, humanhuman

BASIC

Gene RNU4-39P, Length 127 nt, Biotype snRNA, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNU4-39P-201ENST00000362455 KDM4FA0A1W2PPD8 638 aa11.3□□□□□ -0.6
RNU4-39P-201ENST00000362455 TYW1BQ6NUM6 668 aa11.29□□□□□ -0.6
RNU4-39P-201ENST00000362455 C14orf37Q86TY3 774 aa11.29□□□□□ -0.6
RNU4-39P-201ENST00000362455 NPDC1Q9NQX5 325 aaPredicted RBP11.29□□□□□ -0.6
RNU4-39P-201ENST00000362455 HOXB3P14651 431 aaPredicted RBP11.28□□□□□ -0.6
RNU4-39P-201ENST00000362455 PARP9Q8IXQ6 854 aa11.28□□□□□ -0.6
RNU4-39P-201ENST00000362455 ZNF710Q8N1W2 664 aa11.28□□□□□ -0.6
RNU4-39P-201ENST00000362455 ZSWIM6Q9HCJ5 1215 aa11.28□□□□□ -0.6
RNU4-39P-201ENST00000362455 TSR1Q2NL82 804 aaKnown RBP11.27□□□□□ -0.61
RNU4-39P-201ENST00000362455 JPH4Q96JJ6 628 aa11.27□□□□□ -0.61
RNU4-39P-201ENST00000362455 FAM117AQ9C073 453 aa11.26□□□□□ -0.61
RNU4-39P-201ENST00000362455 FBXW7Q969H0 707 aa11.25□□□□□ -0.61
RNU4-39P-201ENST00000362455 FOSBP53539 338 aa11.24□□□□□ -0.61
RNU4-39P-201ENST00000362455 TTLL12Q14166 644 aaPredicted RBP11.23□□□□□ -0.61
RNU4-39P-201ENST00000362455 ARSIQ5FYB1 569 aa11.22□□□□□ -0.61
RNU4-39P-201ENST00000362455 KHSRPQ92945 711 aaKnown RBP eCLIP11.22□□□□□ -0.61
RNU4-39P-201ENST00000362455 NUDT7P0C024 238 aa11.21□□□□□ -0.61
RNU4-39P-201ENST00000362455 ZNF454Q8N9F8 522 aa11.21□□□□□ -0.61
RNU4-39P-201ENST00000362455 DDRGK1Q96HY6 314 aa11.21□□□□□ -0.61
RNU4-39P-201ENST00000362455 PLEKHG3A1L390 1219 aa11.2□□□□□ -0.62
RNU4-39P-201ENST00000362455 GPR153Q6NV75 609 aa11.2□□□□□ -0.62
RNU4-39P-201ENST00000362455 ZDHHC16Q969W1 377 aa11.19□□□□□ -0.62
RNU4-39P-201ENST00000362455 C6orf132Q5T0Z8 1188 aa11.18□□□□□ -0.62
RNU4-39P-201ENST00000362455 GIGYF2Q6Y7W6 1299 aaKnown RBP11.18□□□□□ -0.62
RNU4-39P-201ENST00000362455 PHOX2BQ99453 314 aa11.16□□□□□ -0.62
RNU4-39P-201ENST00000362455 REPIN1Q9BWE0 567 aaKnown RBP11.16□□□□□ -0.62
RNU4-39P-201ENST00000362455 CERKQ8TCT0 537 aa11.15□□□□□ -0.62
RNU4-39P-201ENST00000362455 ADAM33Q9BZ11 813 aa11.15□□□□□ -0.62
RNU4-39P-201ENST00000362455 MS4A1P11836 297 aa11.14□□□□□ -0.63
RNU4-39P-201ENST00000362455 HOXB1P14653 301 aaPredicted RBP11.14□□□□□ -0.63
RNU4-39P-201ENST00000362455 FAM161AQ3B820 660 aa11.14□□□□□ -0.63
RNU4-39P-201ENST00000362455 PADI6Q6TGC4 694 aa11.14□□□□□ -0.63
RNU4-39P-201ENST00000362455 CLCN1P35523 988 aa11.13□□□□□ -0.63
RNU4-39P-201ENST00000362455 MDM2Q00987 491 aaPredicted RBP11.13□□□□□ -0.63
RNU4-39P-201ENST00000362455 TMUB1Q9BVT8 246 aa11.13□□□□□ -0.63
RNU4-39P-201ENST00000362455 METTL3Q86U44 580 aaKnown RBP11.11□□□□□ -0.63
RNU4-39P-201ENST00000362455 GPCPD1Q9NPB8 672 aa11.11□□□□□ -0.63
RNU4-39P-201ENST00000362455 LHX6Q9UPM6 363 aa11.11□□□□□ -0.63
RNU4-39P-201ENST00000362455 OATP04181 439 aa11.1□□□□□ -0.63
RNU4-39P-201ENST00000362455 RBM27Q9P2N5 1060 aaKnown RBP11.1□□□□□ -0.63
RNU4-39P-201ENST00000362455 ADGRG1Q9Y653 693 aa11.1□□□□□ -0.63
RNU4-39P-201ENST00000362455 PSDA5PKW4 1024 aaPredicted RBP11.09□□□□□ -0.63
RNU4-39P-201ENST00000362455 TTC13Q8NBP0 860 aa11.09□□□□□ -0.63
RNU4-39P-201ENST00000362455 PXYLP1Q8TE99 480 aa11.08□□□□□ -0.64
RNU4-39P-201ENST00000362455 PRSS12P56730 875 aa11.07□□□□□ -0.64
RNU4-39P-201ENST00000362455 NLRP7Q8WX94 980 aa11.07□□□□□ -0.64
RNU4-39P-201ENST00000362455 PPP4R3BQ5MIZ7 849 aa11.06□□□□□ -0.64
RNU4-39P-201ENST00000362455 CDCA7LQ96GN5 454 aa11.06□□□□□ -0.64
RNU4-39P-201ENST00000362455 GOPCQ9HD26 462 aa11.06□□□□□ -0.64
RNU4-39P-201ENST00000362455 SSTR3P32745 418 aaPredicted RBP11.05□□□□□ -0.64
RNU4-39P-201ENST00000362455 ST18O60284 1047 aa11.04□□□□□ -0.64
RNU4-39P-201ENST00000362455 COL9A1P20849 921 aa11.04□□□□□ -0.64
RNU4-39P-201ENST00000362455 FAM217BQ9NTX9 383 aaPredicted RBP11.04□□□□□ -0.64
RNU4-39P-201ENST00000362455 BCL2L12Q9HB09 334 aa11.03□□□□□ -0.64
RNU4-39P-201ENST00000362455 FAM163AQ96GL9 167 aaPredicted RBP11.02□□□□□ -0.65
RNU4-39P-201ENST00000362455 FAM198AQ9UFP1 575 aa11.02□□□□□ -0.65
RNU4-39P-201ENST00000362455 RBM46Q8TBY0 533 aaKnown RBP11.01□□□□□ -0.65
RNU4-39P-201ENST00000362455 BEGAINQ9BUH8 593 aa11.01□□□□□ -0.65
RNU4-39P-201ENST00000362455 SH3D19Q5HYK7 790 aa11□□□□□ -0.65
RNU4-39P-201ENST00000362455 PCMTD1Q96MG8 357 aaPredicted RBP11□□□□□ -0.65
RNU4-39P-201ENST00000362455 PPP1R3GB7ZBB8 358 aa10.99□□□□□ -0.65
RNU4-39P-201ENST00000362455 PTPREP23469 700 aa10.99□□□□□ -0.65
RNU4-39P-201ENST00000362455 ERBB3P21860 1342 aa10.99□□□□□ -0.65
RNU4-39P-201ENST00000362455 EMP3P54852 163 aa10.98□□□□□ -0.65
RNU4-39P-201ENST00000362455 SUPT5HO00267 1087 aaKnown RBP10.97□□□□□ -0.65
RNU4-39P-201ENST00000362455 RSPH6AQ9H0K4 717 aa10.97□□□□□ -0.65
RNU4-39P-201ENST00000362455 TSKSQ9UJT2 592 aa10.97□□□□□ -0.65
RNU4-39P-201ENST00000362455 EYA1Q99502 592 aa10.96□□□□□ -0.65
RNU4-39P-201ENST00000362455 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.95□□□□□ -0.66
RNU4-39P-201ENST00000362455 SKIV2LQ15477 1246 aaKnown RBP10.95□□□□□ -0.66
RNU4-39P-201ENST00000362455 MARVELD3Q96A59 401 aa10.95□□□□□ -0.66
RNU4-39P-201ENST00000362455 ZMYND15Q9H091 742 aa10.95□□□□□ -0.66
RNU4-39P-201ENST00000362455 RCCD1A6NED2 376 aa10.94□□□□□ -0.66
RNU4-39P-201ENST00000362455 C3orf80F5H4A9 247 aa10.94□□□□□ -0.66
RNU4-39P-201ENST00000362455 VARS2Q5ST30 1063 aaKnown RBP10.94□□□□□ -0.66
RNU4-39P-201ENST00000362455 NUDT18Q6ZVK8 323 aa10.93□□□□□ -0.66
RNU4-39P-201ENST00000362455 KCNH8Q96L42 1107 aa10.93□□□□□ -0.66
RNU4-39P-201ENST00000362455 TRIM6-TRIM34B2RNG4 842 aa10.92□□□□□ -0.66
RNU4-39P-201ENST00000362455 NBPF26B4DH59 902 aa10.92□□□□□ -0.66
RNU4-39P-201ENST00000362455 FAM205CA6NFA0 338 aa10.91□□□□□ -0.66
RNU4-39P-201ENST00000362455 FLIIQ13045 1269 aa10.91□□□□□ -0.66
RNU4-39P-201ENST00000362455 KCNK17Q96T54 332 aa10.91□□□□□ -0.66
RNU4-39P-201ENST00000362455 POLR3EQ9NVU0 708 aa10.91□□□□□ -0.66
RNU4-39P-201ENST00000362455 PNMA3Q9UL41 463 aa10.91□□□□□ -0.66
RNU4-39P-201ENST00000362455 ONECUT3O60422 494 aaPredicted RBP10.9□□□□□ -0.66
RNU4-39P-201ENST00000362455 MYSM1Q5VVJ2 828 aa10.9□□□□□ -0.66
RNU4-39P-201ENST00000362455 PACS2Q86VP3 889 aa10.9□□□□□ -0.66
RNU4-39P-201ENST00000362455 PROCA1Q8NCQ7 364 aaPredicted RBP10.9□□□□□ -0.66
RNU4-39P-201ENST00000362455 TATDN2Q93075 761 aa10.9□□□□□ -0.66
RNU4-39P-201ENST00000362455 DNAJB2P25686 324 aa10.89□□□□□ -0.67
RNU4-39P-201ENST00000362455 PROX2Q3B8N5 592 aa10.89□□□□□ -0.67
RNU4-39P-201ENST00000362455 TBC1D2Q9BYX2 928 aa10.89□□□□□ -0.67
RNU4-39P-201ENST00000362455 ATP1B4Q9UN42 357 aaPredicted RBP10.88□□□□□ -0.67
RNU4-39P-201ENST00000362455 SMAPO00193 183 aa10.86□□□□□ -0.67
RNU4-39P-201ENST00000362455 CD46P15529 392 aa10.86□□□□□ -0.67
RNU4-39P-201ENST00000362455 LCE2DQ5TA82 110 aaPredicted RBP10.86□□□□□ -0.67
RNU4-39P-201ENST00000362455 ZNF687Q8N1G0 1237 aa10.86□□□□□ -0.67
RNU4-39P-201ENST00000362455 HS3ST6Q96QI5 342 aa10.86□□□□□ -0.67
RNU4-39P-201ENST00000362455 TMEM134Q9H6X4 195 aa10.86□□□□□ -0.67
RNU4-39P-201ENST00000362455 ARHGAP33O14559 1287 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 38.3 ms