RNA–Protein interactions for RNA: ENST00000357409.9

VPS13A-202, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene VPS13A, Length 9,967 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-202ENST00000357409 DHX37Q8IY37 1157 aaKnown RBP9.26□□□□□ -0.93
VPS13A-202ENST00000357409 CLIP1P30622 1438 aa9.26□□□□□ -0.93
VPS13A-202ENST00000357409 XPCQ01831 940 aaPredicted RBP9.26□□□□□ -0.93
VPS13A-202ENST00000357409 CCDC27Q2M243 656 aa9.26□□□□□ -0.93
VPS13A-202ENST00000357409 A0A0U1RQG5 324 aaPredicted RBP9.26□□□□□ -0.93
VPS13A-202ENST00000357409 TDRD9Q8NDG6 1382 aaKnown RBP9.25□□□□□ -0.93
VPS13A-202ENST00000357409 ANKRD45Q5TZF3 282 aa9.25□□□□□ -0.93
VPS13A-202ENST00000357409 RSF1Q96T23 1441 aaPredicted RBP9.25□□□□□ -0.93
VPS13A-202ENST00000357409 SKIDA1Q1XH10 827 aa9.25□□□□□ -0.93
VPS13A-202ENST00000357409 CTDP1Q9Y5B0 961 aaPredicted RBP9.25□□□□□ -0.93
VPS13A-202ENST00000357409 STK31Q9BXU1 1019 aa9.24□□□□□ -0.93
VPS13A-202ENST00000357409 MCCP23508 829 aa9.24□□□□□ -0.93
VPS13A-202ENST00000357409 ZNF219Q9P2Y4 722 aaPredicted RBP9.24□□□□□ -0.93
VPS13A-202ENST00000357409 DDX54Q8TDD1 881 aaKnown RBP9.24□□□□□ -0.93
VPS13A-202ENST00000357409 RBM42Q9BTD8 480 aaKnown RBP9.24□□□□□ -0.93
VPS13A-202ENST00000357409 NOP58Q9Y2X3 529 aaKnown RBP9.24□□□□□ -0.93
VPS13A-202ENST00000357409 CHMP4BP1P59074 171 aa9.23□□□□□ -0.93
VPS13A-202ENST00000357409 PPP4R2Q9NY27 417 aa9.23□□□□□ -0.93
VPS13A-202ENST00000357409 WDR70Q9NW82 654 aa9.23□□□□□ -0.93
VPS13A-202ENST00000357409 TMEM132EQ6IEE7 984 aa9.23□□□□□ -0.93
VPS13A-202ENST00000357409 SF3A1Q15459 793 aaKnown RBP9.23□□□□□ -0.93
VPS13A-202ENST00000357409 MPHOSPH9Q99550 1183 aa9.23□□□□□ -0.93
VPS13A-202ENST00000357409 MYCNP04198 464 aaPredicted RBP9.22□□□□□ -0.93
VPS13A-202ENST00000357409 MYO15BQ96JP2 1530 aa9.22□□□□□ -0.93
VPS13A-202ENST00000357409 MSNP26038 577 aaKnown RBP9.22□□□□□ -0.93
VPS13A-202ENST00000357409 C1orf141Q5JVX7 400 aa9.22□□□□□ -0.93
VPS13A-202ENST00000357409 MCTP1Q6DN14 999 aa9.22□□□□□ -0.93
VPS13A-202ENST00000357409 CCAR2Q8N163 923 aaKnown RBP9.22□□□□□ -0.93
VPS13A-202ENST00000357409 CCNB3Q8WWL7 1395 aa9.22□□□□□ -0.93
VPS13A-202ENST00000357409 TRIM34Q9BYJ4 488 aa9.22□□□□□ -0.93
VPS13A-202ENST00000357409 FAM69CQ0P6D2 419 aa9.21□□□□□ -0.93
VPS13A-202ENST00000357409 VPS37DQ86XT2 251 aa9.21□□□□□ -0.93
VPS13A-202ENST00000357409 NEUROD6Q96NK8 337 aa9.21□□□□□ -0.94
VPS13A-202ENST00000357409 BICDL1Q6ZP65 573 aa9.2□□□□□ -0.94
VPS13A-202ENST00000357409 SPINK5Q9NQ38 1064 aaPredicted RBP9.2□□□□□ -0.94
VPS13A-202ENST00000357409 GRM1Q13255 1194 aa9.2□□□□□ -0.94
VPS13A-202ENST00000357409 CCDC85AQ96PX6 553 aaPredicted RBP9.2□□□□□ -0.94
VPS13A-202ENST00000357409 TEFQ10587 303 aa9.2□□□□□ -0.94
VPS13A-202ENST00000357409 IKQ13123 557 aaPredicted RBP9.2□□□□□ -0.94
VPS13A-202ENST00000357409 PCMTD1Q96MG8 357 aaPredicted RBP9.19□□□□□ -0.94
VPS13A-202ENST00000357409 SPAG9O60271 1321 aaKnown RBP9.19□□□□□ -0.94
VPS13A-202ENST00000357409 RCAN3Q9UKA8 241 aa9.19□□□□□ -0.94
VPS13A-202ENST00000357409 ATP2B2Q01814 1243 aa9.19□□□□□ -0.94
VPS13A-202ENST00000357409 TPD52L1Q16890 204 aaPredicted RBP9.19□□□□□ -0.94
VPS13A-202ENST00000357409 GOLGA6L6A8MZA4 724 aa9.19□□□□□ -0.94
VPS13A-202ENST00000357409 ROCK2O75116 1388 aaKnown RBP9.19□□□□□ -0.94
VPS13A-202ENST00000357409 GGNBP2Q9H3C7 697 aa9.19□□□□□ -0.94
VPS13A-202ENST00000357409 CFAP44Q96MT7 982 aa9.18□□□□□ -0.94
VPS13A-202ENST00000357409 KIAA2012Q0VF49 1180 aa9.18□□□□□ -0.94
VPS13A-202ENST00000357409 COG6Q9Y2V7 657 aa9.18□□□□□ -0.94
VPS13A-202ENST00000357409 NUP155O75694 1391 aa9.18□□□□□ -0.94
VPS13A-202ENST00000357409 PANK3Q9H999 370 aa9.18□□□□□ -0.94
VPS13A-202ENST00000357409 DEKP35659 375 aaKnown RBP9.18□□□□□ -0.94
VPS13A-202ENST00000357409 KANK1Q14678 1352 aa9.18□□□□□ -0.94
VPS13A-202ENST00000357409 ATP2B1P20020 1258 aa9.18□□□□□ -0.94
VPS13A-202ENST00000357409 MAP4K4O95819 1239 aaPredicted RBP9.18□□□□□ -0.94
VPS13A-202ENST00000357409 FAM184AQ8NB25 1140 aa9.17□□□□□ -0.94
VPS13A-202ENST00000357409 PIBF1Q8WXW3 757 aa9.17□□□□□ -0.94
VPS13A-202ENST00000357409 RBM19Q9Y4C8 960 aaKnown RBP9.17□□□□□ -0.94
VPS13A-202ENST00000357409 TRMT1LQ7Z2T5 733 aaKnown RBP9.17□□□□□ -0.94
VPS13A-202ENST00000357409 ZNF592Q92610 1267 aa9.16□□□□□ -0.94
VPS13A-202ENST00000357409 ESCO1Q5FWF5 840 aa9.16□□□□□ -0.94
VPS13A-202ENST00000357409 L3MBTL2Q969R5 705 aa9.16□□□□□ -0.94
VPS13A-202ENST00000357409 CEP89Q96ST8 783 aa9.16□□□□□ -0.94
VPS13A-202ENST00000357409 TCEAL9Q9UHQ7 104 aa9.16□□□□□ -0.94
VPS13A-202ENST00000357409 CEP162Q5TB80 1403 aa9.16□□□□□ -0.94
VPS13A-202ENST00000357409 H3BQV1 296 aa9.16□□□□□ -0.94
VPS13A-202ENST00000357409 IFFO2Q5TF58 517 aa9.16□□□□□ -0.94
VPS13A-202ENST00000357409 VSIG10Q8N0Z9 540 aa9.16□□□□□ -0.94
VPS13A-202ENST00000357409 C9orf78Q9NZ63 289 aaPredicted RBP9.16□□□□□ -0.94
VPS13A-202ENST00000357409 ST20-MTHFSA0A0A6YYL1 179 aa9.15□□□□□ -0.94
VPS13A-202ENST00000357409 FAM161AQ3B820 660 aa9.15□□□□□ -0.94
VPS13A-202ENST00000357409 NLRP2Q9NX02 1062 aa9.15□□□□□ -0.94
VPS13A-202ENST00000357409 PAXIP1Q6ZW49 1069 aaPredicted RBP9.15□□□□□ -0.94
VPS13A-202ENST00000357409 TTC5Q8N0Z6 440 aa9.15□□□□□ -0.94
VPS13A-202ENST00000357409 CABP2Q9NPB3 220 aa9.15□□□□□ -0.94
VPS13A-202ENST00000357409 TTLL5Q6EMB2 1281 aa9.15□□□□□ -0.95
VPS13A-202ENST00000357409 APAF1O14727 1248 aa9.15□□□□□ -0.95
VPS13A-202ENST00000357409 RIC3Q7Z5B4 369 aa9.15□□□□□ -0.95
VPS13A-202ENST00000357409 EFCAB2Q5VUJ9 269 aa9.14□□□□□ -0.95
VPS13A-202ENST00000357409 JPH4Q96JJ6 628 aa9.14□□□□□ -0.95
VPS13A-202ENST00000357409 WASHC4Q2M389 1173 aa9.14□□□□□ -0.95
VPS13A-202ENST00000357409 ANP32EQ9BTT0 268 aa9.14□□□□□ -0.95
VPS13A-202ENST00000357409 MYL6BP14649 208 aa9.13□□□□□ -0.95
VPS13A-202ENST00000357409 ZFYVE27Q5T4F4 411 aa9.13□□□□□ -0.95
VPS13A-202ENST00000357409 SLC4A8Q2Y0W8 1093 aa9.13□□□□□ -0.95
VPS13A-202ENST00000357409 IPO8O15397 1037 aaKnown RBP9.13□□□□□ -0.95
VPS13A-202ENST00000357409 MPNDQ8N594 471 aa9.13□□□□□ -0.95
VPS13A-202ENST00000357409 DCAF8L1A6NGE4 600 aa9.13□□□□□ -0.95
VPS13A-202ENST00000357409 ADAMTS2O95450 1211 aa9.13□□□□□ -0.95
VPS13A-202ENST00000357409 ATF3P18847 181 aa9.13□□□□□ -0.95
VPS13A-202ENST00000357409 CECR2Q9BXF3 1484 aa9.13□□□□□ -0.95
VPS13A-202ENST00000357409 RBM5P52756 815 aaKnown RBP eCLIP9.12□□□□□ -0.95
VPS13A-202ENST00000357409 CRBNQ96SW2 442 aa9.12□□□□□ -0.95
VPS13A-202ENST00000357409 AKAP17AQ02040 695 aaKnown RBP9.12□□□□□ -0.95
VPS13A-202ENST00000357409 RRP12Q5JTH9 1297 aaKnown RBP9.12□□□□□ -0.95
VPS13A-202ENST00000357409 NFXL1Q6ZNB6 911 aa9.12□□□□□ -0.95
VPS13A-202ENST00000357409 C1orf115Q9H7X2 142 aa9.12□□□□□ -0.95
VPS13A-202ENST00000357409 COG3Q96JB2 828 aa9.12□□□□□ -0.95
VPS13A-202ENST00000357409 SLC26A8Q96RN1 970 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 14.3 ms