RNA–Protein interactions for RNA: ENST00000352818.8

CD44-205, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 1,023 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-205ENST00000352818 THEMISQ8N1K5 641 aaPredicted RBP13.12□□□□□ -0.31
CD44-205ENST00000352818 A2MP01023 1474 aa13.11□□□□□ -0.31
CD44-205ENST00000352818 SPAG9O60271 1321 aaKnown RBP13.09□□□□□ -0.31
CD44-205ENST00000352818 ROBO1Q9Y6N7 1651 aa13.08□□□□□ -0.31
CD44-205ENST00000352818 JCADQ9P266 1359 aa13.08□□□□□ -0.31
CD44-205ENST00000352818 RXRBP28702 533 aa13.08□□□□□ -0.32
CD44-205ENST00000352818 ZNF772Q68DY9 489 aaPredicted RBP13.08□□□□□ -0.32
CD44-205ENST00000352818 CDK12Q9NYV4 1490 aaPredicted RBP13.08□□□□□ -0.32
CD44-205ENST00000352818 UGGT1Q9NYU2 1555 aa13.07□□□□□ -0.32
CD44-205ENST00000352818 MIA2Q96PC5 1412 aa13.07□□□□□ -0.32
CD44-205ENST00000352818 PREX2Q70Z35 1606 aa13.07□□□□□ -0.32
CD44-205ENST00000352818 PZPP20742 1482 aa13.07□□□□□ -0.32
CD44-205ENST00000352818 ZC3H13Q5T200 1668 aaKnown RBP13.07□□□□□ -0.32
CD44-205ENST00000352818 FAM135AQ9P2D6 1515 aa13.06□□□□□ -0.32
CD44-205ENST00000352818 NLRP1Q9C000 1473 aa13.05□□□□□ -0.32
CD44-205ENST00000352818 ATP7AQ04656 1500 aa13.05□□□□□ -0.32
CD44-205ENST00000352818 HNRNPMP52272 730 aaKnown RBP eCLIP13.05□□□□□ -0.32
CD44-205ENST00000352818 CDK11AQ9UQ88 783 aaPredicted RBP13.04□□□□□ -0.32
CD44-205ENST00000352818 TMEM94Q12767 1356 aa13.04□□□□□ -0.32
CD44-205ENST00000352818 RGS12O14924 1447 aa13.04□□□□□ -0.32
CD44-205ENST00000352818 MAP3K1Q13233 1512 aa13.03□□□□□ -0.32
CD44-205ENST00000352818 SYCP2Q9BX26 1530 aa13.03□□□□□ -0.32
CD44-205ENST00000352818 INO80Q9ULG1 1556 aaPredicted RBP13.03□□□□□ -0.32
CD44-205ENST00000352818 ATP1B4Q9UN42 357 aaPredicted RBP13.03□□□□□ -0.32
CD44-205ENST00000352818 KDM5DQ9BY66 1539 aa13.03□□□□□ -0.32
CD44-205ENST00000352818 RBM33Q96EV2 1170 aaKnown RBP13.02□□□□□ -0.33
CD44-205ENST00000352818 LTKP29376 864 aa13.01□□□□□ -0.33
CD44-205ENST00000352818 CSRNP3Q8WYN3 585 aa13.01□□□□□ -0.33
CD44-205ENST00000352818 ZRANB1Q9UGI0 708 aa13.01□□□□□ -0.33
CD44-205ENST00000352818 CLIP1P30622 1438 aa13.01□□□□□ -0.33
CD44-205ENST00000352818 COL16A1Q07092 1604 aaPredicted RBP13□□□□□ -0.33
CD44-205ENST00000352818 SPATA31A6Q5VVP1 1343 aa12.99□□□□□ -0.33
CD44-205ENST00000352818 EP400Q96L91 3159 aa12.98□□□□□ -0.33
CD44-205ENST00000352818 ZNF777Q9ULD5 760 aaPredicted RBP12.98□□□□□ -0.33
CD44-205ENST00000352818 PHLPP1O60346 1717 aa12.97□□□□□ -0.33
CD44-205ENST00000352818 MEX3CQ5U5Q3 659 aaKnown RBP12.97□□□□□ -0.33
CD44-205ENST00000352818 SCAF11Q99590 1463 aaKnown RBP12.97□□□□□ -0.33
CD44-205ENST00000352818 NCOA2Q15596 1464 aa12.96□□□□□ -0.34
CD44-205ENST00000352818 LRRC9Q6ZRR7 1453 aa12.96□□□□□ -0.34
CD44-205ENST00000352818 FGD6Q6ZV73 1430 aa12.96□□□□□ -0.34
CD44-205ENST00000352818 SLAIN2Q9P270 581 aa12.95□□□□□ -0.34
CD44-205ENST00000352818 CDC42BPAQ5VT25 1732 aa12.95□□□□□ -0.34
CD44-205ENST00000352818 KIAA1107Q9UPP5 1409 aa12.95□□□□□ -0.34
CD44-205ENST00000352818 AFF2P51816 1311 aa12.94□□□□□ -0.34
CD44-205ENST00000352818 LRRIQ1Q96JM4 1722 aa12.94□□□□□ -0.34
CD44-205ENST00000352818 ARHGAP23Q9P227 1491 aa12.94□□□□□ -0.34
CD44-205ENST00000352818 DHX29Q7Z478 1369 aaKnown RBP12.94□□□□□ -0.34
CD44-205ENST00000352818 GPATCH8Q9UKJ3 1502 aaKnown RBP12.93□□□□□ -0.34
CD44-205ENST00000352818 FMN1Q68DA7 1419 aa12.93□□□□□ -0.34
CD44-205ENST00000352818 NUTM2BA6NNL0 878 aaPredicted RBP12.92□□□□□ -0.34
CD44-205ENST00000352818 NUTM2EB1AL46 878 aaPredicted RBP12.92□□□□□ -0.34
CD44-205ENST00000352818 NUTM2DQ5VT03 806 aaPredicted RBP12.92□□□□□ -0.34
CD44-205ENST00000352818 NUTM2AQ8IVF1 878 aaPredicted RBP12.92□□□□□ -0.34
CD44-205ENST00000352818 WASHC2CQ9Y4E1 1318 aa12.91□□□□□ -0.34
CD44-205ENST00000352818 KIF3BO15066 747 aa12.91□□□□□ -0.34
CD44-205ENST00000352818 KCNA6P17658 529 aa12.91□□□□□ -0.34
CD44-205ENST00000352818 TXNDC2Q86VQ3 553 aa12.91□□□□□ -0.34
CD44-205ENST00000352818 SLIT1O75093 1534 aa12.9□□□□□ -0.34
CD44-205ENST00000352818 IFFO2Q5TF58 517 aa12.9□□□□□ -0.34
CD44-205ENST00000352818 PROSER2Q86WR7 435 aaPredicted RBP12.9□□□□□ -0.34
CD44-205ENST00000352818 ARHGAP35Q9NRY4 1499 aa12.9□□□□□ -0.34
CD44-205ENST00000352818 ADGBQ8N7X0 1667 aa12.89□□□□□ -0.35
CD44-205ENST00000352818 PRDM15P57071 1507 aaPredicted RBP12.89□□□□□ -0.35
CD44-205ENST00000352818 RBM6P78332 1123 aaKnown RBP12.89□□□□□ -0.35
CD44-205ENST00000352818 ATAD2Q6PL18 1390 aa12.89□□□□□ -0.35
CD44-205ENST00000352818 CEP162Q5TB80 1403 aa12.88□□□□□ -0.35
CD44-205ENST00000352818 QTRT2Q9H974 415 aaKnown RBP12.88□□□□□ -0.35
CD44-205ENST00000352818 TIAM1Q13009 1591 aa12.88□□□□□ -0.35
CD44-205ENST00000352818 SHPRHQ149N8 1683 aa12.87□□□□□ -0.35
CD44-205ENST00000352818 ERVK-7P63135 1459 aa12.87□□□□□ -0.35
CD44-205ENST00000352818 UBR1Q8IWV7 1749 aa12.87□□□□□ -0.35
CD44-205ENST00000352818 DIP2AQ14689 1571 aa12.86□□□□□ -0.35
CD44-205ENST00000352818 MBD5Q9P267 1494 aa12.86□□□□□ -0.35
CD44-205ENST00000352818 ZNF644Q9H582 1327 aaPredicted RBP12.86□□□□□ -0.35
CD44-205ENST00000352818 LRP5O75197 1615 aa12.85□□□□□ -0.35
CD44-205ENST00000352818 MSH6P52701 1360 aa12.85□□□□□ -0.35
CD44-205ENST00000352818 PLEKHH2Q8IVE3 1493 aa12.85□□□□□ -0.35
CD44-205ENST00000352818 AHDC1Q5TGY3 1603 aaPredicted RBP12.84□□□□□ -0.35
CD44-205ENST00000352818 RTEL1-TNFRSF6BF6WH68 1400 aa12.84□□□□□ -0.35
CD44-205ENST00000352818 SLC26A8Q96RN1 970 aa12.83□□□□□ -0.36
CD44-205ENST00000352818 FOXD1Q16676 465 aa12.82□□□□□ -0.36
CD44-205ENST00000352818 CFDP1Q9UEE9 299 aaPredicted RBP12.82□□□□□ -0.36
CD44-205ENST00000352818 NKTRP30414 1462 aaKnown RBP12.82□□□□□ -0.36
CD44-205ENST00000352818 TET3O43151 1660 aa12.82□□□□□ -0.36
CD44-205ENST00000352818 ABCC3O15438 1527 aa12.82□□□□□ -0.36
CD44-205ENST00000352818 NWD1Q149M9 1564 aa12.81□□□□□ -0.36
CD44-205ENST00000352818 TRIM26Q12899 539 aaPredicted RBP12.81□□□□□ -0.36
CD44-205ENST00000352818 TMEM2Q9UHN6 1383 aa12.81□□□□□ -0.36
CD44-205ENST00000352818 C8orf37Q96NL8 207 aa12.8□□□□□ -0.36
CD44-205ENST00000352818 MAST1Q9Y2H9 1570 aa12.79□□□□□ -0.36
CD44-205ENST00000352818 KDM5AP29375 1690 aaKnown RBP12.78□□□□□ -0.36
CD44-205ENST00000352818 EID1Q9Y6B2 187 aa12.78□□□□□ -0.36
CD44-205ENST00000352818 CAMSAP2Q08AD1 1489 aa12.78□□□□□ -0.36
CD44-205ENST00000352818 EHMT2Q96KQ7 1210 aa12.77□□□□□ -0.37
CD44-205ENST00000352818 BRINP3Q76B58 766 aa12.76□□□□□ -0.37
CD44-205ENST00000352818 CCDC125Q86Z20 511 aa12.76□□□□□ -0.37
CD44-205ENST00000352818 PCGF6Q9BYE7 350 aa12.76□□□□□ -0.37
CD44-205ENST00000352818 CASKIN1Q8WXD9 1431 aa12.76□□□□□ -0.37
CD44-205ENST00000352818 CCDC18Q5T9S5 1454 aa12.76□□□□□ -0.37
CD44-205ENST00000352818 YY1P25490 414 aa12.75□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 138.8 ms