RNA–Protein interactions for RNA: ENST00000339488.8

PTCHD4-201, Transcript of patched domain containing 4, humanhuman

APPRIS P1 TSL 2 BASIC

Gene PTCHD4, Length 2,850 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCHD4-201ENST00000339488 MAP7D2Q96T17 732 aa12.36□□□□□ -0.43
PTCHD4-201ENST00000339488 RAD54L2Q9Y4B4 1467 aa12.36□□□□□ -0.43
PTCHD4-201ENST00000339488 ARAP1Q96P48 1450 aa12.35□□□□□ -0.43
PTCHD4-201ENST00000339488 ZNF326Q5BKZ1 582 aaKnown RBP12.35□□□□□ -0.43
PTCHD4-201ENST00000339488 WDR62O43379 1518 aa12.35□□□□□ -0.43
PTCHD4-201ENST00000339488 FHAD1B1AJZ9 1412 aa12.35□□□□□ -0.43
PTCHD4-201ENST00000339488 NCOA2Q15596 1464 aa12.34□□□□□ -0.43
PTCHD4-201ENST00000339488 EIF4G2P78344 907 aaKnown RBP eCLIP12.34□□□□□ -0.43
PTCHD4-201ENST00000339488 ANTXR1Q9H6X2 564 aa12.34□□□□□ -0.43
PTCHD4-201ENST00000339488 TNNT2P45379 298 aaPredicted RBP12.34□□□□□ -0.43
PTCHD4-201ENST00000339488 DNTTIP2Q5QJE6 756 aaKnown RBP12.34□□□□□ -0.43
PTCHD4-201ENST00000339488 USP19O94966 1318 aa12.34□□□□□ -0.43
PTCHD4-201ENST00000339488 CCDC7Q96M83 1385 aa12.34□□□□□ -0.43
PTCHD4-201ENST00000339488 P3H3Q8IVL6 736 aa12.33□□□□□ -0.44
PTCHD4-201ENST00000339488 NCLP19338 710 aaKnown RBP12.33□□□□□ -0.44
PTCHD4-201ENST00000339488 CHMP4CQ96CF2 233 aa12.33□□□□□ -0.44
PTCHD4-201ENST00000339488 KTN1Q86UP2 1357 aaKnown RBP12.33□□□□□ -0.44
PTCHD4-201ENST00000339488 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.32□□□□□ -0.44
PTCHD4-201ENST00000339488 FAM177BA6PVY3 158 aa12.32□□□□□ -0.44
PTCHD4-201ENST00000339488 MSNP26038 577 aaKnown RBP12.32□□□□□ -0.44
PTCHD4-201ENST00000339488 CCDC94Q9BW85 323 aaPredicted RBP12.31□□□□□ -0.44
PTCHD4-201ENST00000339488 BRD2P25440 801 aaKnown RBP12.3□□□□□ -0.44
PTCHD4-201ENST00000339488 ZSCAN30Q86W11 494 aa12.3□□□□□ -0.44
PTCHD4-201ENST00000339488 BECN1Q14457 450 aa12.29□□□□□ -0.44
PTCHD4-201ENST00000339488 SPDYE4A6NLX3 237 aa12.29□□□□□ -0.44
PTCHD4-201ENST00000339488 KDM2BQ8NHM5 1336 aa12.29□□□□□ -0.44
PTCHD4-201ENST00000339488 KIF7Q2M1P5 1343 aa12.28□□□□□ -0.44
PTCHD4-201ENST00000339488 ERICH3Q5RHP9 1530 aa12.28□□□□□ -0.44
PTCHD4-201ENST00000339488 PANK3Q9H999 370 aa12.28□□□□□ -0.44
PTCHD4-201ENST00000339488 TEX2Q8IWB9 1127 aa12.28□□□□□ -0.44
PTCHD4-201ENST00000339488 HAP1P54257 671 aaPredicted RBP12.27□□□□□ -0.45
PTCHD4-201ENST00000339488 ATP2B3Q16720 1220 aa12.27□□□□□ -0.45
PTCHD4-201ENST00000339488 PNISRQ8TF01 805 aaKnown RBP12.27□□□□□ -0.45
PTCHD4-201ENST00000339488 TBC1D2Q9BYX2 928 aa12.27□□□□□ -0.45
PTCHD4-201ENST00000339488 TARBP1Q13395 1621 aaKnown RBP12.26□□□□□ -0.45
PTCHD4-201ENST00000339488 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.26□□□□□ -0.45
PTCHD4-201ENST00000339488 KDM5BQ9UGL1 1544 aa12.25□□□□□ -0.45
PTCHD4-201ENST00000339488 ZNF608Q9ULD9 1512 aaPredicted RBP12.25□□□□□ -0.45
PTCHD4-201ENST00000339488 KIF20AO95235 890 aa12.25□□□□□ -0.45
PTCHD4-201ENST00000339488 PHLDB1Q86UU1 1377 aa12.25□□□□□ -0.45
PTCHD4-201ENST00000339488 IRX5P78411 483 aaPredicted RBP12.24□□□□□ -0.45
PTCHD4-201ENST00000339488 IRX3P78415 501 aaPredicted RBP12.24□□□□□ -0.45
PTCHD4-201ENST00000339488 TDRD9Q8NDG6 1382 aaKnown RBP12.24□□□□□ -0.45
PTCHD4-201ENST00000339488 RGS22Q8NE09 1264 aa12.24□□□□□ -0.45
PTCHD4-201ENST00000339488 MAP3K1Q13233 1512 aa12.24□□□□□ -0.45
PTCHD4-201ENST00000339488 NCOA1Q15788 1441 aa12.24□□□□□ -0.45
PTCHD4-201ENST00000339488 CENPQQ7L2Z9 268 aaPredicted RBP12.23□□□□□ -0.45
PTCHD4-201ENST00000339488 KCNG1Q9UIX4 513 aa12.23□□□□□ -0.45
PTCHD4-201ENST00000339488 LETM1O95202 739 aaPredicted RBP12.23□□□□□ -0.45
PTCHD4-201ENST00000339488 NGEFQ8N5V2 710 aa12.23□□□□□ -0.45
PTCHD4-201ENST00000339488 DYNC1I1O14576 645 aa12.22□□□□□ -0.45
PTCHD4-201ENST00000339488 ABCA10Q8WWZ4 1543 aa12.22□□□□□ -0.45
PTCHD4-201ENST00000339488 KCNJ4P48050 445 aa12.22□□□□□ -0.45
PTCHD4-201ENST00000339488 GTPBP4Q9BZE4 634 aaKnown RBP12.22□□□□□ -0.45
PTCHD4-201ENST00000339488 NASPP49321 788 aaPredicted RBP12.21□□□□□ -0.45
PTCHD4-201ENST00000339488 SAMD1Q6SPF0 538 aaPredicted RBP12.21□□□□□ -0.45
PTCHD4-201ENST00000339488 AQRO60306 1485 aaKnown RBP eCLIP12.21□□□□□ -0.459e-6■■□□□ 13.1
PTCHD4-201ENST00000339488 ZNF710Q8N1W2 664 aa12.2□□□□□ -0.46
PTCHD4-201ENST00000339488 EIF2AK3Q9NZJ5 1116 aaKnown RBP12.2□□□□□ -0.46
PTCHD4-201ENST00000339488 CCDC173Q0VFZ6 552 aa12.2□□□□□ -0.46
PTCHD4-201ENST00000339488 ZNF771Q7L3S4 317 aaPredicted RBP12.2□□□□□ -0.46
PTCHD4-201ENST00000339488 MTERF4Q7Z6M4 381 aaKnown RBP12.2□□□□□ -0.46
PTCHD4-201ENST00000339488 CHRM1P11229 460 aaPredicted RBP12.19□□□□□ -0.46
PTCHD4-201ENST00000339488 TERF1P54274 439 aa12.19□□□□□ -0.46
PTCHD4-201ENST00000339488 IFT140Q96RY7 1462 aa12.19□□□□□ -0.46
PTCHD4-201ENST00000339488 KIF27Q86VH2 1401 aa12.19□□□□□ -0.46
PTCHD4-201ENST00000339488 NCBP3Q53F19 620 aaKnown RBP12.18□□□□□ -0.46
PTCHD4-201ENST00000339488 TRERF1Q96PN7 1200 aa12.18□□□□□ -0.46
PTCHD4-201ENST00000339488 SLC52A1Q9NWF4 448 aa12.18□□□□□ -0.46
PTCHD4-201ENST00000339488 DHX29Q7Z478 1369 aaKnown RBP12.18□□□□□ -0.46
PTCHD4-201ENST00000339488 CNPY4Q8N129 248 aa12.18□□□□□ -0.46
PTCHD4-201ENST00000339488 ATP1B4Q9UN42 357 aaPredicted RBP12.18□□□□□ -0.46
PTCHD4-201ENST00000339488 MYCNP04198 464 aaPredicted RBP12.17□□□□□ -0.46
PTCHD4-201ENST00000339488 MLECQ14165 292 aa12.17□□□□□ -0.46
PTCHD4-201ENST00000339488 RNF216Q9NWF9 866 aaPredicted RBP12.17□□□□□ -0.46
PTCHD4-201ENST00000339488 MYOM3Q5VTT5 1437 aa12.17□□□□□ -0.46
PTCHD4-201ENST00000339488 MPNDQ8N594 471 aa12.17□□□□□ -0.46
PTCHD4-201ENST00000339488 ABCA5Q8WWZ7 1642 aa12.17□□□□□ -0.46
PTCHD4-201ENST00000339488 EIF4G3O43432 1585 aaKnown RBP12.16□□□□□ -0.46
PTCHD4-201ENST00000339488 SASS6Q6UVJ0 657 aa12.16□□□□□ -0.46
PTCHD4-201ENST00000339488 PPP1R9BQ96SB3 815 aa12.15□□□□□ -0.46
PTCHD4-201ENST00000339488 NLRP1Q9C000 1473 aa12.15□□□□□ -0.46
PTCHD4-201ENST00000339488 L3MBTL2Q969R5 705 aa12.15□□□□□ -0.46
PTCHD4-201ENST00000339488 FOXD4L1Q9NU39 408 aa12.15□□□□□ -0.46
PTCHD4-201ENST00000339488 GAPVD1Q14C86 1478 aa12.14□□□□□ -0.47
PTCHD4-201ENST00000339488 NBPF8Q3BBV2 869 aa12.14□□□□□ -0.47
PTCHD4-201ENST00000339488 CHMP5Q9NZZ3 219 aa12.14□□□□□ -0.47
PTCHD4-201ENST00000339488 TRIM6-TRIM34B2RNG4 842 aa12.14□□□□□ -0.47
PTCHD4-201ENST00000339488 U2AF2P26368 475 aaKnown RBP eCLIP12.14□□□□□ -0.478e-14■■■□□ 16.2
PTCHD4-201ENST00000339488 TRIM34Q9BYJ4 488 aa12.14□□□□□ -0.47
PTCHD4-201ENST00000339488 CCDC18Q5T9S5 1454 aa12.13□□□□□ -0.47
PTCHD4-201ENST00000339488 DDX11L8A8MPP1 907 aa12.12□□□□□ -0.47
PTCHD4-201ENST00000339488 IGHDP01880 384 aa12.12□□□□□ -0.47
PTCHD4-201ENST00000339488 IGF1RP08069 1367 aa12.12□□□□□ -0.47
PTCHD4-201ENST00000339488 PRR29P0C7W0 189 aa12.12□□□□□ -0.47
PTCHD4-201ENST00000339488 WWC1Q8IX03 1113 aa12.12□□□□□ -0.47
PTCHD4-201ENST00000339488 PBRM1Q86U86 1689 aa12.11□□□□□ -0.47
PTCHD4-201ENST00000339488 ZNF500O60304 480 aaPredicted RBP12.11□□□□□ -0.47
PTCHD4-201ENST00000339488 NOL7Q9UMY1 257 aaKnown RBP12.11□□□□□ -0.47
PTCHD4-201ENST00000339488 PRXQ9BXM0 1461 aa12.11□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms