RNA–Protein interactions for RNA: ENST00000336838.10

CCDC88A-202, Transcript of coiled-coil domain containing 88A, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CCDC88A, Length 9,505 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-202ENST00000336838 WASHC2CQ9Y4E1 1318 aa12.88□□□□□ -0.35
CCDC88A-202ENST00000336838 U2SURPO15042 1029 aaKnown RBP12.88□□□□□ -0.35
CCDC88A-202ENST00000336838 BRD4O60885 1362 aaPredicted RBP12.88□□□□□ -0.35
CCDC88A-202ENST00000336838 NCAPD3P42695 1498 aa12.88□□□□□ -0.35
CCDC88A-202ENST00000336838 ROCK1Q13464 1354 aa12.88□□□□□ -0.35
CCDC88A-202ENST00000336838 ST18O60284 1047 aa12.87□□□□□ -0.35
CCDC88A-202ENST00000336838 SPAG9O60271 1321 aaKnown RBP12.87□□□□□ -0.35
CCDC88A-202ENST00000336838 NEUROD2Q15784 382 aa12.87□□□□□ -0.35
CCDC88A-202ENST00000336838 UNC13AQ9UPW8 1703 aa12.87□□□□□ -0.35
CCDC88A-202ENST00000336838 ATP6V1DQ9Y5K8 247 aa12.87□□□□□ -0.35
CCDC88A-202ENST00000336838 KIF21AQ7Z4S6 1674 aa12.86□□□□□ -0.35
CCDC88A-202ENST00000336838 BIVM-ERCC5R4GMW8 1640 aa12.86□□□□□ -0.35
CCDC88A-202ENST00000336838 RRP1P56182 461 aaKnown RBP12.86□□□□□ -0.35
CCDC88A-202ENST00000336838 KIF3AQ9Y496 699 aa12.86□□□□□ -0.35
CCDC88A-202ENST00000336838 RTF1Q92541 710 aaKnown RBP12.85□□□□□ -0.35
CCDC88A-202ENST00000336838 TPM4P67936 248 aa12.85□□□□□ -0.35
CCDC88A-202ENST00000336838 PLEKHH2Q8IVE3 1493 aa12.85□□□□□ -0.35
CCDC88A-202ENST00000336838 RUSC2Q8N2Y8 1516 aa12.84□□□□□ -0.35
CCDC88A-202ENST00000336838 AQRO60306 1485 aaKnown RBP eCLIP12.84□□□□□ -0.35
CCDC88A-202ENST00000336838 GSE1Q14687 1217 aa12.84□□□□□ -0.35
CCDC88A-202ENST00000336838 SRPK2P78362 688 aaKnown RBP12.84□□□□□ -0.35
CCDC88A-202ENST00000336838 HFM1A2PYH4 1435 aa12.83□□□□□ -0.35
CCDC88A-202ENST00000336838 NCOA2Q15596 1464 aa12.83□□□□□ -0.36
CCDC88A-202ENST00000336838 ITPRIPQ8IWB1 547 aa12.83□□□□□ -0.36
CCDC88A-202ENST00000336838 PEG3Q9GZU2 1588 aa12.83□□□□□ -0.36
CCDC88A-202ENST00000336838 CCDC7Q96M83 1385 aa12.82□□□□□ -0.36
CCDC88A-202ENST00000336838 THOC2Q8NI27 1593 aaKnown RBP12.82□□□□□ -0.36
CCDC88A-202ENST00000336838 CTTNBP2Q8WZ74 1663 aa12.82□□□□□ -0.36
CCDC88A-202ENST00000336838 DRC7Q8IY82 874 aa12.81□□□□□ -0.36
CCDC88A-202ENST00000336838 DNMBPQ6XZF7 1577 aa12.81□□□□□ -0.36
CCDC88A-202ENST00000336838 CFTRP13569 1480 aa12.81□□□□□ -0.36
CCDC88A-202ENST00000336838 PRXQ9BXM0 1461 aa12.81□□□□□ -0.36
CCDC88A-202ENST00000336838 ITSN2Q9NZM3 1697 aa12.81□□□□□ -0.36
CCDC88A-202ENST00000336838 ARAP1Q96P48 1450 aa12.8□□□□□ -0.36
CCDC88A-202ENST00000336838 U2AF1L5P0DN76 240 aaPredicted RBP12.8□□□□□ -0.36
CCDC88A-202ENST00000336838 U2AF1Q01081 240 aaKnown RBP eCLIP12.8□□□□□ -0.36
CCDC88A-202ENST00000336838 SMC4Q9NTJ3 1288 aa12.8□□□□□ -0.36
CCDC88A-202ENST00000336838 KIF16BQ96L93 1317 aa12.79□□□□□ -0.36
CCDC88A-202ENST00000336838 PDE4AP27815 886 aa12.79□□□□□ -0.36
CCDC88A-202ENST00000336838 MTERF4Q7Z6M4 381 aaKnown RBP12.79□□□□□ -0.36
CCDC88A-202ENST00000336838 C14orf37Q86TY3 774 aa12.79□□□□□ -0.36
CCDC88A-202ENST00000336838 ISY1Q9ULR0 285 aaKnown RBP12.78□□□□□ -0.36
CCDC88A-202ENST00000336838 STK31Q9BXU1 1019 aa12.78□□□□□ -0.36
CCDC88A-202ENST00000336838 TDRD9Q8NDG6 1382 aaKnown RBP12.78□□□□□ -0.36
CCDC88A-202ENST00000336838 RTN4Q9NQC3 1192 aaKnown RBP12.77□□□□□ -0.37
CCDC88A-202ENST00000336838 REC8O95072 547 aa12.77□□□□□ -0.37
CCDC88A-202ENST00000336838 IGF1RP08069 1367 aa12.77□□□□□ -0.37
CCDC88A-202ENST00000336838 DDX19BQ9UMR2 479 aa12.76□□□□□ -0.37
CCDC88A-202ENST00000336838 PTPN23Q9H3S7 1636 aa12.76□□□□□ -0.37
CCDC88A-202ENST00000336838 PLCB2Q00722 1185 aa12.76□□□□□ -0.37
CCDC88A-202ENST00000336838 EVC2Q86UK5 1308 aa12.75□□□□□ -0.37
CCDC88A-202ENST00000336838 ZKSCAN2Q63HK3 967 aa12.75□□□□□ -0.37
CCDC88A-202ENST00000336838 SLKQ9H2G2 1235 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-202ENST00000336838 HSP90AA2PQ14568 343 aaPredicted RBP12.74□□□□□ -0.37
CCDC88A-202ENST00000336838 GNL2Q13823 731 aaKnown RBP12.73□□□□□ -0.37
CCDC88A-202ENST00000336838 CFAP43Q8NDM7 1665 aa12.73□□□□□ -0.37
CCDC88A-202ENST00000336838 GRIN2BQ13224 1484 aa12.72□□□□□ -0.37
CCDC88A-202ENST00000336838 MAP7D2Q96T17 732 aa12.72□□□□□ -0.37
CCDC88A-202ENST00000336838 SMG6Q86US8 1419 aaKnown RBP12.72□□□□□ -0.37
CCDC88A-202ENST00000336838 ANKRD50Q9ULJ7 1429 aa12.72□□□□□ -0.37
CCDC88A-202ENST00000336838 FOXD1Q16676 465 aa12.72□□□□□ -0.37
CCDC88A-202ENST00000336838 ST20-MTHFSA0A0A6YYL1 179 aa12.72□□□□□ -0.37
CCDC88A-202ENST00000336838 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.72□□□□□ -0.37
CCDC88A-202ENST00000336838 LRRFIP1Q32MZ4 808 aaKnown RBP12.71□□□□□ -0.37
CCDC88A-202ENST00000336838 MFAP1P55081 439 aaKnown RBP12.71□□□□□ -0.38
CCDC88A-202ENST00000336838 CT47B1P0C2W7 299 aaPredicted RBP12.71□□□□□ -0.38
CCDC88A-202ENST00000336838 GOLGA6L1Q8N7Z2 621 aa12.7□□□□□ -0.38
CCDC88A-202ENST00000336838 PCF11O94913 1555 aaKnown RBP12.7□□□□□ -0.38
CCDC88A-202ENST00000336838 WDR97A6NE52 1622 aa12.7□□□□□ -0.38
CCDC88A-202ENST00000336838 IQGAP2Q13576 1575 aa12.7□□□□□ -0.38
CCDC88A-202ENST00000336838 SYNJ2O15056 1496 aa12.7□□□□□ -0.38
CCDC88A-202ENST00000336838 CCDC141Q6ZP82 1450 aa12.69□□□□□ -0.38
CCDC88A-202ENST00000336838 NUCB2P80303 420 aa12.69□□□□□ -0.38
CCDC88A-202ENST00000336838 CHMP5Q9NZZ3 219 aa12.68□□□□□ -0.38
CCDC88A-202ENST00000336838 VGFO15240 615 aaPredicted RBP12.68□□□□□ -0.38
CCDC88A-202ENST00000336838 KIF14Q15058 1648 aa12.68□□□□□ -0.38
CCDC88A-202ENST00000336838 KIF7Q2M1P5 1343 aa12.68□□□□□ -0.38
CCDC88A-202ENST00000336838 PANK3Q9H999 370 aa12.68□□□□□ -0.38
CCDC88A-202ENST00000336838 KIAA1107Q9UPP5 1409 aa12.68□□□□□ -0.38
CCDC88A-202ENST00000336838 LAMC3Q9Y6N6 1575 aa12.67□□□□□ -0.38
CCDC88A-202ENST00000336838 DHX8Q14562 1220 aaKnown RBP12.67□□□□□ -0.38
CCDC88A-202ENST00000336838 PTPRGP23470 1445 aa12.66□□□□□ -0.38
CCDC88A-202ENST00000336838 TPM3P06753 285 aa12.66□□□□□ -0.38
CCDC88A-202ENST00000336838 RUFY2Q8WXA3 655 aa12.66□□□□□ -0.38
CCDC88A-202ENST00000336838 ARHGAP5Q13017 1502 aa12.65□□□□□ -0.38
CCDC88A-202ENST00000336838 GZF1Q9H116 711 aaPredicted RBP12.65□□□□□ -0.38
CCDC88A-202ENST00000336838 AKNAQ7Z591 1439 aa12.65□□□□□ -0.38
CCDC88A-202ENST00000336838 RUNDC1Q96C34 613 aa12.64□□□□□ -0.39
CCDC88A-202ENST00000336838 API5Q9BZZ5 524 aaKnown RBP12.64□□□□□ -0.39
CCDC88A-202ENST00000336838 GPS2Q13227 327 aa12.64□□□□□ -0.39
CCDC88A-202ENST00000336838 PDIA4P13667 645 aaKnown RBP12.63□□□□□ -0.39
CCDC88A-202ENST00000336838 WWC1Q8IX03 1113 aa12.63□□□□□ -0.39
CCDC88A-202ENST00000336838 NAP1L2Q9ULW6 460 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-202ENST00000336838 POLA1P09884 1462 aaPredicted RBP12.63□□□□□ -0.39
CCDC88A-202ENST00000336838 DAPK1P53355 1430 aa12.63□□□□□ -0.39
CCDC88A-202ENST00000336838 MRE11P49959 708 aa12.63□□□□□ -0.39
CCDC88A-202ENST00000336838 TRIM6-TRIM34B2RNG4 842 aa12.63□□□□□ -0.39
CCDC88A-202ENST00000336838 MCM2P49736 904 aa12.62□□□□□ -0.39
CCDC88A-202ENST00000336838 SPRYD3Q8NCJ5 442 aa12.62□□□□□ -0.39
CCDC88A-202ENST00000336838 EIF2AK4Q9P2K8 1649 aaKnown RBP12.62□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms