RNA–Protein interactions for RNA: ENST00000307340.7

USH2A-201, Transcript of usherin, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USH2A, Length 18,883 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH2A-201ENST00000307340 TPM3P06753 285 aa5.03□□□□□ -1.6
USH2A-201ENST00000307340 KIAA2012Q0VF49 1180 aa5.03□□□□□ -1.6
USH2A-201ENST00000307340 KIF7Q2M1P5 1343 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 IFT140Q96RY7 1462 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 HMGB1P1B2RPK0 211 aaPredicted RBP5.02□□□□□ -1.61
USH2A-201ENST00000307340 ST18O60284 1047 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 HOOK1Q9UJC3 728 aaKnown RBP5.02□□□□□ -1.61
USH2A-201ENST00000307340 NCOA2Q15596 1464 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 CACNA1FO60840 1977 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 GPS2Q13227 327 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 LRRC9Q6ZRR7 1453 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 NOP58Q9Y2X3 529 aaKnown RBP5.02□□□□□ -1.61
USH2A-201ENST00000307340 TAF3Q5VWG9 929 aa5.02□□□□□ -1.61
USH2A-201ENST00000307340 INSRP06213 1382 aa5.01□□□□□ -1.61
USH2A-201ENST00000307340 PABPN1Q86U42 306 aaKnown RBP eCLIP5.01□□□□□ -1.61
USH2A-201ENST00000307340 SYNJ1O43426 1573 aa5.01□□□□□ -1.61
USH2A-201ENST00000307340 CALRP27797 417 aaKnown RBP5.01□□□□□ -1.61
USH2A-201ENST00000307340 FBLN2P98095 1184 aa5.01□□□□□ -1.61
USH2A-201ENST00000307340 EFCAB2Q5VUJ9 269 aa5.01□□□□□ -1.61
USH2A-201ENST00000307340 PPP6R1Q9UPN7 881 aa5.01□□□□□ -1.61
USH2A-201ENST00000307340 CENPQQ7L2Z9 268 aaPredicted RBP5.01□□□□□ -1.61
USH2A-201ENST00000307340 FANCIQ9NVI1 1328 aa5.01□□□□□ -1.61
USH2A-201ENST00000307340 LETM1O95202 739 aaPredicted RBP5.01□□□□□ -1.61
USH2A-201ENST00000307340 TUBB4BP68371 445 aa5.01□□□□□ -1.61
USH2A-201ENST00000307340 HOXA7P31268 230 aaPredicted RBP5□□□□□ -1.61
USH2A-201ENST00000307340 GOLGA6L4A6NEF3 574 aa5□□□□□ -1.61
USH2A-201ENST00000307340 ABCA10Q8WWZ4 1543 aa5□□□□□ -1.61
USH2A-201ENST00000307340 TXLNBQ8N3L3 684 aa5□□□□□ -1.61
USH2A-201ENST00000307340 REC8O95072 547 aa5□□□□□ -1.61
USH2A-201ENST00000307340 ATAD2Q6PL18 1390 aa5□□□□□ -1.61
USH2A-201ENST00000307340 ZMYM4Q5VZL5 1548 aa5□□□□□ -1.61
USH2A-201ENST00000307340 KIAA1211Q6ZU35 1233 aa5□□□□□ -1.61
USH2A-201ENST00000307340 ZMYM3Q14202 1370 aa5□□□□□ -1.61
USH2A-201ENST00000307340 CENPJQ9HC77 1338 aaPredicted RBP5□□□□□ -1.61
USH2A-201ENST00000307340 VGFO15240 615 aaPredicted RBP5□□□□□ -1.61
USH2A-201ENST00000307340 CAGE1Q8TC20 777 aa5□□□□□ -1.61
USH2A-201ENST00000307340 FGD6Q6ZV73 1430 aa5□□□□□ -1.61
USH2A-201ENST00000307340 BRD4O60885 1362 aaPredicted RBP4.99□□□□□ -1.61
USH2A-201ENST00000307340 CCDC70Q6NSX1 233 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 RAB3GAP2Q9H2M9 1393 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 MYBBP1AQ9BQG0 1328 aaKnown RBP4.99□□□□□ -1.61
USH2A-201ENST00000307340 CCP110O43303 1012 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 SMC4Q9NTJ3 1288 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 IRX6P78412 446 aaPredicted RBP4.99□□□□□ -1.61
USH2A-201ENST00000307340 PRXQ9BXM0 1461 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 PBRM1Q86U86 1689 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 HDGFL2Q7Z4V5 671 aaPredicted RBP4.99□□□□□ -1.61
USH2A-201ENST00000307340 TPM2P07951 284 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 FHOD3Q2V2M9 1422 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 E9PSI1 815 aa4.99□□□□□ -1.61
USH2A-201ENST00000307340 NKTRP30414 1462 aaKnown RBP4.99□□□□□ -1.61
USH2A-201ENST00000307340 CECR2Q9BXF3 1484 aa4.98□□□□□ -1.61
USH2A-201ENST00000307340 ARHGEF12Q9NZN5 1544 aa4.98□□□□□ -1.61
USH2A-201ENST00000307340 DDX10Q13206 875 aaKnown RBP4.98□□□□□ -1.61
USH2A-201ENST00000307340 HSP90AB4PQ58FF6 505 aa4.98□□□□□ -1.61
USH2A-201ENST00000307340 BCANQ96GW7 911 aa4.98□□□□□ -1.61
USH2A-201ENST00000307340 ABCF1Q8NE71 845 aaKnown RBP eCLIP4.98□□□□□ -1.61
USH2A-201ENST00000307340 CAVIN2O95810 425 aa4.98□□□□□ -1.61
USH2A-201ENST00000307340 TEX14Q8IWB6 1497 aa4.98□□□□□ -1.61
USH2A-201ENST00000307340 PODXL2Q9NZ53 605 aa4.98□□□□□ -1.61
USH2A-201ENST00000307340 ZNF777Q9ULD5 760 aaPredicted RBP4.97□□□□□ -1.61
USH2A-201ENST00000307340 NSD2O96028 1365 aa4.97□□□□□ -1.61
USH2A-201ENST00000307340 HMGN5P82970 282 aaKnown RBP4.97□□□□□ -1.61
USH2A-201ENST00000307340 NOL10Q9BSC4 688 aaKnown RBP4.97□□□□□ -1.61
USH2A-201ENST00000307340 GCC2Q8IWJ2 1684 aa4.97□□□□□ -1.61
USH2A-201ENST00000307340 AMER1Q5JTC6 1135 aaPredicted RBP4.97□□□□□ -1.61
USH2A-201ENST00000307340 HIP1O00291 1037 aa4.97□□□□□ -1.61
USH2A-201ENST00000307340 CAMSAP2Q08AD1 1489 aa4.97□□□□□ -1.61
USH2A-201ENST00000307340 PPP1R15AO75807 674 aaPredicted RBP4.96□□□□□ -1.61
USH2A-201ENST00000307340 NUP160Q12769 1436 aa4.96□□□□□ -1.61
USH2A-201ENST00000307340 MFAP1P55081 439 aaKnown RBP4.96□□□□□ -1.62
USH2A-201ENST00000307340 PLEKHH1Q9ULM0 1364 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 PTMAP06454 111 aaKnown RBP4.96□□□□□ -1.62
USH2A-201ENST00000307340 MRC2Q9UBG0 1479 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 PTPN23Q9H3S7 1636 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 NAT10Q9H0A0 1025 aaKnown RBP4.96□□□□□ -1.62
USH2A-201ENST00000307340 PDCP20941 246 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 RDXP35241 583 aaKnown RBP4.96□□□□□ -1.62
USH2A-201ENST00000307340 NCBP3Q53F19 620 aaKnown RBP4.96□□□□□ -1.62
USH2A-201ENST00000307340 MYO6Q9UM54 1294 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 RNF20Q5VTR2 975 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 RUFY2Q8WXA3 655 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 KIF1BO60333 1816 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 EVC2Q86UK5 1308 aa4.96□□□□□ -1.62
USH2A-201ENST00000307340 RTF1Q92541 710 aaKnown RBP4.96□□□□□ -1.62
USH2A-201ENST00000307340 NUCB2P80303 420 aa4.95□□□□□ -1.62
USH2A-201ENST00000307340 RPGRIP1LQ68CZ1 1315 aa4.95□□□□□ -1.62
USH2A-201ENST00000307340 CDR1P51861 262 aa4.95□□□□□ -1.62
USH2A-201ENST00000307340 GOLGA2Q08379 1002 aa4.95□□□□□ -1.62
USH2A-201ENST00000307340 SOS1Q07889 1333 aaPredicted RBP4.95□□□□□ -1.62
USH2A-201ENST00000307340 EIF3DO15371 548 aaKnown RBP eCLIP4.95□□□□□ -1.62
USH2A-201ENST00000307340 IPO9Q96P70 1041 aaKnown RBP4.95□□□□□ -1.62
USH2A-201ENST00000307340 DNTTIP2Q5QJE6 756 aaKnown RBP4.95□□□□□ -1.62
USH2A-201ENST00000307340 PIP4K2AP48426 406 aaPredicted RBP4.95□□□□□ -1.62
USH2A-201ENST00000307340 FAM9BQ8IZU0 186 aa4.95□□□□□ -1.62
USH2A-201ENST00000307340 SETQ01105 290 aaPredicted RBP4.95□□□□□ -1.62
USH2A-201ENST00000307340 TMX4Q9H1E5 349 aaPredicted RBP4.95□□□□□ -1.62
USH2A-201ENST00000307340 ACBD3Q9H3P7 528 aa4.95□□□□□ -1.62
USH2A-201ENST00000307340 FAM184AQ8NB25 1140 aa4.95□□□□□ -1.62
USH2A-201ENST00000307340 DDX19BQ9UMR2 479 aa4.95□□□□□ -1.62
Retrieved 100 of 20,778 RNA–protein pairs in 43.6 ms