RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 ERICH6BQ5W0A0 696 aa21.77■■□□□ 1.08
CTCF-201ENST00000264010 DENND4BO75064 1496 aaPredicted RBP21.77■■□□□ 1.08
CTCF-201ENST00000264010 KTN1Q86UP2 1357 aaKnown RBP21.77■■□□□ 1.07
CTCF-201ENST00000264010 PPP4R2Q9NY27 417 aa21.76■■□□□ 1.07
CTCF-201ENST00000264010 ADCY10Q96PN6 1610 aa21.76■■□□□ 1.07
CTCF-201ENST00000264010 AFAP1Q8N556 730 aa21.76■■□□□ 1.07
CTCF-201ENST00000264010 KNSTRNQ9Y448 316 aa21.74■■□□□ 1.07
CTCF-201ENST00000264010 CCDC184Q52MB2 194 aa21.74■■□□□ 1.07
CTCF-201ENST00000264010 DEKP35659 375 aaKnown RBP21.73■■□□□ 1.07
CTCF-201ENST00000264010 SENP3-EIF4A1A0A087X0R7 540 aa21.72■■□□□ 1.07
CTCF-201ENST00000264010 CC2D1BQ5T0F9 858 aaKnown RBP21.72■■□□□ 1.07
CTCF-201ENST00000264010 ABCC2Q92887 1545 aa21.72■■□□□ 1.07
CTCF-201ENST00000264010 SYCP2Q9BX26 1530 aa21.72■■□□□ 1.07
CTCF-201ENST00000264010 MYBBP1AQ9BQG0 1328 aaKnown RBP21.71■■□□□ 1.07
CTCF-201ENST00000264010 OSCARQ8IYS5 282 aa21.69■■□□□ 1.06
CTCF-201ENST00000264010 SLC24A1O60721 1099 aa21.69■■□□□ 1.06
CTCF-201ENST00000264010 WDR43Q15061 677 aaKnown RBP eCLIP21.69■■□□□ 1.06
CTCF-201ENST00000264010 ANO8Q9HCE9 1232 aaPredicted RBP21.69■■□□□ 1.06
CTCF-201ENST00000264010 PLCH2O75038 1416 aa21.69■■□□□ 1.06
CTCF-201ENST00000264010 ARHGEF5Q12774 1597 aa21.68■■□□□ 1.06
CTCF-201ENST00000264010 NLRP13Q86W25 1043 aa21.68■■□□□ 1.06
CTCF-201ENST00000264010 MBD5Q9P267 1494 aa21.67■■□□□ 1.06
CTCF-201ENST00000264010 KDM5BQ9UGL1 1544 aa21.67■■□□□ 1.06
CTCF-201ENST00000264010 NBPF1Q3BBV0 1214 aa21.67■■□□□ 1.06
CTCF-201ENST00000264010 STAC3Q96MF2 364 aa21.66■■□□□ 1.06
CTCF-201ENST00000264010 RALGAPBQ86X10 1494 aa21.66■■□□□ 1.06
CTCF-201ENST00000264010 FAM135AQ9P2D6 1515 aa21.65■■□□□ 1.06
CTCF-201ENST00000264010 NUDCQ9Y266 331 aa21.64■■□□□ 1.06
CTCF-201ENST00000264010 ARHGEF12Q9NZN5 1544 aa21.64■■□□□ 1.05
CTCF-201ENST00000264010 CDC42BPAQ5VT25 1732 aa21.64■■□□□ 1.05
CTCF-201ENST00000264010 RBM19Q9Y4C8 960 aaKnown RBP21.64■■□□□ 1.05
CTCF-201ENST00000264010 CHD1O14646 1710 aa21.63■■□□□ 1.05
CTCF-201ENST00000264010 GGT6Q6P531 493 aa21.62■■□□□ 1.05
CTCF-201ENST00000264010 UHRF1BP1Q6BDS2 1440 aa21.62■■□□□ 1.05
CTCF-201ENST00000264010 SPATA31E1Q6ZUB1 1445 aa21.62■■□□□ 1.05
CTCF-201ENST00000264010 ANP32AP39687 249 aaKnown RBP21.61■■□□□ 1.05
CTCF-201ENST00000264010 PANK3Q9H999 370 aa21.61■■□□□ 1.05
CTCF-201ENST00000264010 DUOX2Q9NRD8 1548 aa21.61■■□□□ 1.05
CTCF-201ENST00000264010 EIF3AQ14152 1382 aaKnown RBP21.6■■□□□ 1.05
CTCF-201ENST00000264010 ERBINQ96RT1 1412 aa21.58■■□□□ 1.05
CTCF-201ENST00000264010 B4GALNT3Q6L9W6 998 aa21.58■■□□□ 1.05
CTCF-201ENST00000264010 SAMD9LQ8IVG5 1584 aa21.58■■□□□ 1.04
CTCF-201ENST00000264010 BRD4O60885 1362 aaPredicted RBP21.58■■□□□ 1.04
CTCF-201ENST00000264010 GLIPR1L2Q4G1C9 344 aa21.58■■□□□ 1.04
CTCF-201ENST00000264010 ARXQ96QS3 562 aa21.58■■□□□ 1.04
CTCF-201ENST00000264010 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP21.57■■□□□ 1.045e-8■■■■■ 28.6
CTCF-201ENST00000264010 CROCC2H7BZ55 1655 aa21.57■■□□□ 1.04
CTCF-201ENST00000264010 SCAPERQ9BY12 1400 aa21.57■■□□□ 1.04
CTCF-201ENST00000264010 PREX2Q70Z35 1606 aa21.56■■□□□ 1.04
CTCF-201ENST00000264010 TRAPPC8Q9Y2L5 1435 aa21.53■■□□□ 1.04
CTCF-201ENST00000264010 PNISRQ8TF01 805 aaKnown RBP21.53■■□□□ 1.04
CTCF-201ENST00000264010 PRAG1Q86YV5 1406 aa21.52■■□□□ 1.04
CTCF-201ENST00000264010 KDM5DQ9BY66 1539 aa21.52■■□□□ 1.04
CTCF-201ENST00000264010 STAG3Q9UJ98 1225 aa21.52■■□□□ 1.04
CTCF-201ENST00000264010 WASHC2CQ9Y4E1 1318 aa21.52■■□□□ 1.03
CTCF-201ENST00000264010 TTC37Q6PGP7 1564 aa21.5■■□□□ 1.03
CTCF-201ENST00000264010 FANCAO15360 1455 aa21.5■■□□□ 1.03
CTCF-201ENST00000264010 PDE3BQ13370 1112 aa21.5■■□□□ 1.03
CTCF-201ENST00000264010 UHRF1BP1LA0JNW5 1464 aa21.49■■□□□ 1.03
CTCF-201ENST00000264010 MYO5CQ9NQX4 1742 aa21.48■■□□□ 1.03
CTCF-201ENST00000264010 ADGRL1O94910 1474 aa21.48■■□□□ 1.03
CTCF-201ENST00000264010 WDR7Q9Y4E6 1490 aa21.48■■□□□ 1.03
CTCF-201ENST00000264010 ERCC6L2Q5T890 1561 aa21.47■■□□□ 1.03
CTCF-201ENST00000264010 DHX29Q7Z478 1369 aaKnown RBP21.47■■□□□ 1.03
CTCF-201ENST00000264010 ZBTB47Q9UFB7 747 aaPredicted RBP21.46■■□□□ 1.03
CTCF-201ENST00000264010 RTEL1-TNFRSF6BF6WH68 1400 aa21.46■■□□□ 1.03
CTCF-201ENST00000264010 RCAN3Q9UKA8 241 aa21.44■■□□□ 1.02
CTCF-201ENST00000264010 GOLGA6L2Q8N9W4 650 aaPredicted RBP21.44■■□□□ 1.02
CTCF-201ENST00000264010 MSH5O43196 834 aa21.43■■□□□ 1.02
CTCF-201ENST00000264010 SMG6Q86US8 1419 aaKnown RBP21.41■■□□□ 1.02
CTCF-201ENST00000264010 ESF1Q9H501 851 aaKnown RBP21.41■■□□□ 1.02
CTCF-201ENST00000264010 CDC42BPBQ9Y5S2 1711 aa21.41■■□□□ 1.02
CTCF-201ENST00000264010 A2MP01023 1474 aa21.4■■□□□ 1.02
CTCF-201ENST00000264010 ASXL2Q76L83 1435 aa21.4■■□□□ 1.02
CTCF-201ENST00000264010 MAST1Q9Y2H9 1570 aa21.39■■□□□ 1.02
CTCF-201ENST00000264010 CFAP70Q5T0N1 1121 aa21.39■■□□□ 1.02
CTCF-201ENST00000264010 KDM5CP41229 1560 aa21.39■■□□□ 1.01
CTCF-201ENST00000264010 SHROOM2Q13796 1616 aa21.38■■□□□ 1.01
CTCF-201ENST00000264010 CANXP27824 592 aaKnown RBP21.38■■□□□ 1.01
CTCF-201ENST00000264010 ZCCHC11Q5TAX3 1644 aaKnown RBP21.38■■□□□ 1.01
CTCF-201ENST00000264010 CD109Q6YHK3 1445 aa21.37■■□□□ 1.01
CTCF-201ENST00000264010 TRAK1Q9UPV9 953 aa21.36■■□□□ 1.01
CTCF-201ENST00000264010 SENP3Q9H4L4 574 aaPredicted RBP21.36■■□□□ 1.01
CTCF-201ENST00000264010 EIF2AK4Q9P2K8 1649 aaKnown RBP21.36■■□□□ 1.01
CTCF-201ENST00000264010 DISP3Q9P2K9 1392 aa21.35■■□□□ 1.01
CTCF-201ENST00000264010 GPRASP1Q5JY77 1395 aa21.35■■□□□ 1.01
CTCF-201ENST00000264010 CFAP53Q96M91 514 aa21.35■■□□□ 1.01
CTCF-201ENST00000264010 PLXNC1O60486 1568 aa21.34■■□□□ 1.01
CTCF-201ENST00000264010 TESK2Q96S53 571 aa21.34■■□□□ 1.01
CTCF-201ENST00000264010 ABCC1P33527 1531 aa21.34■■□□□ 1.01
CTCF-201ENST00000264010 MORC1Q86VD1 984 aa21.33■■□□□ 1.01
CTCF-201ENST00000264010 VGFO15240 615 aaPredicted RBP21.32■■□□□ 1
CTCF-201ENST00000264010 LAS1LQ9Y4W2 734 aaKnown RBP21.32■■□□□ 1
CTCF-201ENST00000264010 PLA2R1Q13018 1463 aa21.31■■□□□ 1
CTCF-201ENST00000264010 CENPJQ9HC77 1338 aaPredicted RBP21.31■■□□□ 1
CTCF-201ENST00000264010 CYB5RLQ6IPT4 315 aa21.31■■□□□ 1
CTCF-201ENST00000264010 RRP1P56182 461 aaKnown RBP21.3■■□□□ 1
CTCF-201ENST00000264010 TNNT2P45379 298 aaPredicted RBP21.3■■□□□ 1
CTCF-201ENST00000264010 SCAF11Q99590 1463 aaKnown RBP21.3■■□□□ 1
CTCF-201ENST00000264010 CLASP1Q7Z460 1538 aa21.3■■□□□ 1
Retrieved 100 of 20,778 RNA–protein pairs in 131.7 ms